CsaV3_3G031280.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGACGGTGGCCCTAGATATGCTGGAAGAGGCCATCCGAATAACAGAGGACGATCTCCTCGCTCCGCCGATCATTTCACTTATCGTCCCCGTCATGTAATGTAACCTTCTTCAAGCTCCACTACTTTTGAAAAGTTTGCACGCATATTGGCTCTAGTCTTTATGTTTGCATTCTTTGTTTGTTCATATAATGTATTTATCCTCGTCTATGGAAAGATCGAGTTAACTGTTTACTGAGTGCGTTTCAGTTTTTTGTTTTTCTTTTTCGTTCATGCATTAGAATTCAATTATATTGTTGACACAATTAGAGATTCATCAGATATTGTAAAAATGTGGTCAAACTTAAGGAAATGCTAAATTGCTCAGTTTTTTGTTTATTTGGACTCATTAATTTACAATGTGTCTGATAAGTTCTTTGGCTAAGAGTTTTGTGTTTAATTGGTCCTTGATCTATCCACGTTTTTTTTTAAAAAATCTCAGCAAGATTGAAACCGTAGGGTAAACGTGAATCATAACATTTAAATTTATATCTATTAGAGGAATTACTTTTTAAAATTTTTGAAAATCAAAGACCTTTTGGATCCAAAAGTCTAGGGACTTGTTAAACTTTTCATGTTCATTGACTTATTTCACACAAAATTTCAAAAACTTGTTAGACACTTTTTGTTGTTGAAGGACCAAATAGACACAAAATTTAAAGTTCAAGGACTAAACTTACCATTTAACTTAAGTAAATTGATCGTTTGTGATGTGTGTATCTCGGTAATGAGCCCAGAGCTTCTGGTTTAATCTGTTTATGGAATTCTGAAATTTATAGGTGTTTAGTTTTGATTCCAAATGAAAGAAATTCAGTGTATGTTAGGAATAGGTTTTTTCTGTTAGTAAGGGAGTAGAATTGAAGGTGCTGGAGTTTATAACTGTACTCTCGTGTTTACTTCTAATCTTTTCACTTTCTAACAAAATGGGCAGGCTGGAGGTGAGGGGTCTTCTGTTGCTGGTTCTTCTAATCCTGGTAGTGGAGCTTTCCGAGGTAGAAGTTCTCACCAGATGTCATCAAGGAATTTCAGGAAGCCTGTTGGACAAAAACAGGCCTCAAGTTCTGAACAATGGCAGTGGCGGCCTCTAAATAGCGGGAAAGATGCATCTCCTGGTGCTGTTGATCTTCAGCTGCAACATAATTCAACGGATGATATGAGCAATAACAATAAACAATTATTGGAATCTATTGCATCAAATTCTGATTGCATCGAACTCTCGTCCTCTTCTGCTCAAAATGTCTCTAAGAGTTTGCATTCTGCTGTAGAAAGAATTCATGTTCAGGGACCTACAGCAGTATGTGGAAGTTATGGTGATTCTTTTCCTTATGATAATTGTAACAGATCAGATGTGGTTGGACAGGAACTCAAGGTTCAACCTTCATTGAAATCCTGTGCAAAAGATGAGAGTTTTACCATACAACTTGGGAAAAGTAATGATGTTTTTAACTCTACAGACTCAAAAGACAAGAAGCCTTCAGTAGACCTCGATTCTTTCGATATATGCCCTCCAAAAACTGGAGGTGTCATGCTGAATCCTTCTTTATTAGCTATGAACAGAGAAAAAGAAATGAGATGA ATGAATGACGGTGGCCCTAGATATGCTGGAAGAGGCCATCCGAATAACAGAGGACGATCTCCTCGCTCCGCCGATCATTTCACTTATCGTCCCCGTCATGCTGGAGGTGAGGGGTCTTCTGTTGCTGGTTCTTCTAATCCTGGTAGTGGAGCTTTCCGAGGTAGAAGTTCTCACCAGATGTCATCAAGGAATTTCAGGAAGCCTGTTGGACAAAAACAGGCCTCAAGTTCTGAACAATGGCAGTGGCGGCCTCTAAATAGCGGGAAAGATGCATCTCCTGGTGCTGTTGATCTTCAGCTGCAACATAATTCAACGGATGATATGAGCAATAACAATAAACAATTATTGGAATCTATTGCATCAAATTCTGATTGCATCGAACTCTCGTCCTCTTCTGCTCAAAATGTCTCTAAGAGTTTGCATTCTGCTGTAGAAAGAATTCATGTTCAGGGACCTACAGCAGTATGTGGAAGTTATGGTGATTCTTTTCCTTATGATAATTGTAACAGATCAGATGTGGTTGGACAGGAACTCAAGGTTCAACCTTCATTGAAATCCTGTGCAAAAGATGAGAGTTTTACCATACAACTTGGGAAAAGTAATGATGTTTTTAACTCTACAGACTCAAAAGACAAGAAGCCTTCAGTAGACCTCGATTCTTTCGATATATGCCCTCCAAAAACTGGAGGTGTCATGCTGAATCCTTCTTTATTAGCTATGAACAGAGAAAAAGAAATGAGATGA ATGAATGACGGTGGCCCTAGATATGCTGGAAGAGGCCATCCGAATAACAGAGGACGATCTCCTCGCTCCGCCGATCATTTCACTTATCGTCCCCGTCATGCTGGAGGTGAGGGGTCTTCTGTTGCTGGTTCTTCTAATCCTGGTAGTGGAGCTTTCCGAGGTAGAAGTTCTCACCAGATGTCATCAAGGAATTTCAGGAAGCCTGTTGGACAAAAACAGGCCTCAAGTTCTGAACAATGGCAGTGGCGGCCTCTAAATAGCGGGAAAGATGCATCTCCTGGTGCTGTTGATCTTCAGCTGCAACATAATTCAACGGATGATATGAGCAATAACAATAAACAATTATTGGAATCTATTGCATCAAATTCTGATTGCATCGAACTCTCGTCCTCTTCTGCTCAAAATGTCTCTAAGAGTTTGCATTCTGCTGTAGAAAGAATTCATGTTCAGGGACCTACAGCAGTATGTGGAAGTTATGGTGATTCTTTTCCTTATGATAATTGTAACAGATCAGATGTGGTTGGACAGGAACTCAAGGTTCAACCTTCATTGAAATCCTGTGCAAAAGATGAGAGTTTTACCATACAACTTGGGAAAAGTAATGATGTTTTTAACTCTACAGACTCAAAAGACAAGAAGCCTTCAGTAGACCTCGATTCTTTCGATATATGCCCTCCAAAAACTGGAGGTGTCATGCTGAATCCTTCTTTATTAGCTATGAACAGAGAAAAAGAAATGAGATGA MNDGGPRYAGRGHPNNRGRSPRSADHFTYRPRHAGGEGSSVAGSSNPGSGAFRGRSSHQMSSRNFRKPVGQKQASSSEQWQWRPLNSGKDASPGAVDLQLQHNSTDDMSNNNKQLLESIASNSDCIELSSSSAQNVSKSLHSAVERIHVQGPTAVCGSYGDSFPYDNCNRSDVVGQELKVQPSLKSCAKDESFTIQLGKSNDVFNSTDSKDKKPSVDLDSFDICPPKTGGVMLNPSLLAMNREKEMR
BLAST of CsaV3_3G031280.1 vs. NCBI nr
Match: KGN58499.1 (hypothetical protein Csa_3G651830 [Cucumis sativus]) HSP 1 Score: 481.5 bits (1238), Expect = 1.7e-132 Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. NCBI nr
Match: XP_011651736.1 (PREDICTED: uncharacterized protein LOC101205291 [Cucumis sativus]) HSP 1 Score: 481.5 bits (1238), Expect = 1.7e-132 Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. NCBI nr
Match: XP_016903133.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501985 [Cucumis melo]) HSP 1 Score: 386.3 bits (991), Expect = 7.6e-104 Identity = 207/264 (78.41%), Postives = 217/264 (82.20%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. NCBI nr
Match: XP_022142665.1 (uncharacterized protein LOC111012720 [Momordica charantia]) HSP 1 Score: 278.5 bits (711), Expect = 2.2e-71 Identity = 162/247 (65.59%), Postives = 184/247 (74.49%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. NCBI nr
Match: XP_022956002.1 (uncharacterized protein LOC111457830 isoform X2 [Cucurbita moschata]) HSP 1 Score: 270.8 bits (691), Expect = 4.7e-69 Identity = 159/264 (60.23%), Postives = 184/264 (69.70%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. TrEMBL
Match: tr|A0A0A0LC72|A0A0A0LC72_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651830 PE=4 SV=1) HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-132 Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. TrEMBL
Match: tr|A0A1S4E4H2|A0A1S4E4H2_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103501985 OS=Cucumis melo OX=3656 GN=LOC103501985 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 5.0e-104 Identity = 207/264 (78.41%), Postives = 217/264 (82.20%), Query Frame = 0
BLAST of CsaV3_3G031280.1 vs. TrEMBL
Match: tr|A0A2C9UXL6|A0A2C9UXL6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G015800 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05 Identity = 78/250 (31.20%), Postives = 118/250 (47.20%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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