CsaV3_3G021420.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TACAAAACAAGAAAATGAGCCAAAGTGATAGCATTTGGGTAAAAGTTCACCTAAAATCTTCCATCGAGAAGTTCTATGGGTTCTTCAGGAACCATATGGAGGATTTGGTCAATATGTTTCCTGAGCAATTTAAGAGCTTCGCATTTGTTGAAGGTCAAAGTTTATCTGCTGATACTGTTGTACAGTTGGAATACAACCTTGGTGAGTATGATGATTTCTATTCTCCATTCTTCTTCTAGATATTTATATTTAGGCTTAATTGTCGAGCACTCTTTATTGTTTTTAAAATAACCATTTTAAAACTCAATGAATAACCGATTAACACATAATTTAAGACATCTTAAGACTATATATATATATAATTAATTAATTTATAACTAAAATATTTTTTTTAAAAGTTTGGAAGTTGCATATATAGCATTCAAGCCAGACTATTATTTACTGGTATAGCTTAATGCAAAATGGTTTGTAAATATAGCAAAATTTAGATCCAGATCACGATATCTATCATTGATAAACCATATCGCTAATAGGAACTTGATCTATAATATACTATATATATAGTAGTAAGAGTCTATGAACAATAGAATTATTATATTTATATAATTTTCTAAAAGTGGTTGTAGTATTATTTTTTAAGTACTACTTATTATGATTACCCTATTTTAAAGTTGAGGGACTAGTTTGAAACATTGAATATTTTATTCTTTGTGCACGAAGATATATATAGTCTTAATTATATAGTCATTGTAAAGAGAAATTGTTTTAAATGACAACTTTTGAAAATATTTACAAATATAACAAAATATTACAATCTATCTCTGATTAACCAAGATAGACTACTATTTGTGTGTATCGTCATATATATAGGCATACAAATGATCATATATCTTGGTTTATCACGTAATAGATAGTTGATATTTTACTATAATTTATACATACCTTATATCATTTGGTTGCATTTGAAAATAAGTCTAACTATTATCTATATAGTAGAAATTAAACAAAAATAAAACGACATATCAAGGGATCATAAATAATAATTTTGCATAACACTATACATATGTTCACTACATATTTGGTTAAGTAAAGAACAAAAAGTAATTAAAGATCAGCGGGTTTAATATATTTTGGATGTGAACAAACAGGAAGTCATCAATTATTAACAGCAAACATAAAGCTAAAAGTGGTGGATGATATGAAGAAATACATAATTTATGAGGCTGTTGAAGGAGATGTGCTAAAGAATTACAAAGTGTTCACTACGAGACTTGAAGTTGTTAATGGAAGCTTAAGCAAAGTTGGAGGAGGAAGCTTTGCAAAATGGACTATTGATTTTGTGAAGGCAAATGAAAATGTGCCTTCACCTGAAAACTACTTGGAAATGTTTATCAACATGTCCAAAGGTGTTGATGCTTATTTTTCCAAGAACCAAAAGCCCTAAATTACTCAAGCTGTGTAACCTAAAGTTTGGAGACTTTCTACTTGGCTTGTTCTTAAAATAAG ATGAGCCAAAGTGATAGCATTTGGGTAAAAGTTCACCTAAAATCTTCCATCGAGAAGTTCTATGGGTTCTTCAGGAACCATATGGAGGATTTGGTCAATATGTTTCCTGAGCAATTTAAGAGCTTCGCATTTGTTGAAGGTCAAAGTTTATCTGCTGATACTGTTGTACAGTTGGAATACAACCTTGGAAGTCATCAATTATTAACAGCAAACATAAAGCTAAAAGTGGTGGATGATATGAAGAAATACATAATTTATGAGGCTGTTGAAGGAGATGTGCTAAAGAATTACAAAGTGTTCACTACGAGACTTGAAGTTGTTAATGGAAGCTTAAGCAAAGTTGGAGGAGGAAGCTTTGCAAAATGGACTATTGATTTTGTGAAGGCAAATGAAAATGTGCCTTCACCTGAAAACTACTTGGAAATGTTTATCAACATGTCCAAAGGTGTTGATGCTTATTTTTCCAAGAACCAAAAGCCCTAA ATGAGCCAAAGTGATAGCATTTGGGTAAAAGTTCACCTAAAATCTTCCATCGAGAAGTTCTATGGGTTCTTCAGGAACCATATGGAGGATTTGGTCAATATGTTTCCTGAGCAATTTAAGAGCTTCGCATTTGTTGAAGGTCAAAGTTTATCTGCTGATACTGTTGTACAGTTGGAATACAACCTTGGAAGTCATCAATTATTAACAGCAAACATAAAGCTAAAAGTGGTGGATGATATGAAGAAATACATAATTTATGAGGCTGTTGAAGGAGATGTGCTAAAGAATTACAAAGTGTTCACTACGAGACTTGAAGTTGTTAATGGAAGCTTAAGCAAAGTTGGAGGAGGAAGCTTTGCAAAATGGACTATTGATTTTGTGAAGGCAAATGAAAATGTGCCTTCACCTGAAAACTACTTGGAAATGTTTATCAACATGTCCAAAGGTGTTGATGCTTATTTTTCCAAGAACCAAAAGCCCTAA MSQSDSIWVKVHLKSSIEKFYGFFRNHMEDLVNMFPEQFKSFAFVEGQSLSADTVVQLEYNLGSHQLLTANIKLKVVDDMKKYIIYEAVEGDVLKNYKVFTTRLEVVNGSLSKVGGGSFAKWTIDFVKANENVPSPENYLEMFINMSKGVDAYFSKNQKP
BLAST of CsaV3_3G021420.1 vs. NCBI nr
Match: XP_011652791.1 (PREDICTED: uncharacterized protein LOC105435098 [Cucumis sativus] >KGN57831.1 hypothetical protein Csa_3G340350 [Cucumis sativus]) HSP 1 Score: 323.2 bits (827), Expect = 5.1e-85 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. NCBI nr
Match: XP_008457130.1 (PREDICTED: MLP-like protein 423 [Cucumis melo]) HSP 1 Score: 221.5 bits (563), Expect = 2.1e-54 Identity = 107/125 (85.60%), Postives = 116/125 (92.80%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. NCBI nr
Match: BAX08654.1 (major latex-like protein [Luffa aegyptiaca]) HSP 1 Score: 215.7 bits (548), Expect = 1.2e-52 Identity = 103/158 (65.19%), Postives = 129/158 (81.65%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. NCBI nr
Match: XP_022948511.1 (MLP-like protein 34 [Cucurbita moschata]) HSP 1 Score: 209.5 bits (532), Expect = 8.3e-51 Identity = 97/158 (61.39%), Postives = 126/158 (79.75%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. NCBI nr
Match: XP_022998715.1 (major latex protein 15-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 209.5 bits (532), Expect = 8.3e-51 Identity = 99/157 (63.06%), Postives = 123/157 (78.34%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TAIR10
Match: AT5G28010.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 74.7 bits (182), Expect = 5.8e-14 Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TAIR10
Match: AT5G28000.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 73.9 bits (180), Expect = 9.8e-14 Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TAIR10
Match: AT1G70880.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 70.9 bits (172), Expect = 8.3e-13 Identity = 46/144 (31.94%), Postives = 68/144 (47.22%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TAIR10
Match: AT1G70850.1 (MLP-like protein 34) HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12 Identity = 40/150 (26.67%), Postives = 72/150 (48.00%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TAIR10
Match: AT1G70890.1 (MLP-like protein 43) HSP 1 Score: 64.3 bits (155), Expect = 7.8e-11 Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. Swiss-Prot
Match: sp|Q9SSK7|MLP34_ARATH (MLP-like protein 34 OS=Arabidopsis thaliana OX=3702 GN=MLP34 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 5.7e-11 Identity = 40/150 (26.67%), Postives = 72/150 (48.00%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. Swiss-Prot
Match: sp|Q9SSK5|MLP43_ARATH (MLP-like protein 43 OS=Arabidopsis thaliana OX=3702 GN=MLP43 PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09 Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. Swiss-Prot
Match: sp|Q941R6|MLP31_ARATH (MLP-like protein 31 OS=Arabidopsis thaliana OX=3702 GN=MLP31 PE=2 SV=2) HSP 1 Score: 62.4 bits (150), Expect = 5.3e-09 Identity = 35/143 (24.48%), Postives = 68/143 (47.55%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. Swiss-Prot
Match: sp|Q06394|ML146_PAPSO (Major latex protein 146 OS=Papaver somniferum OX=3469 GN=MLP146 PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 9.1e-09 Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. Swiss-Prot
Match: sp|Q9SSK9|MLP28_ARATH (MLP-like protein 28 OS=Arabidopsis thaliana OX=3702 GN=MLP28 PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08 Identity = 38/144 (26.39%), Postives = 68/144 (47.22%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TrEMBL
Match: tr|A0A0A0LCN2|A0A0A0LCN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G340350 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 3.4e-85 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TrEMBL
Match: tr|A0A1S3C4D7|A0A1S3C4D7_CUCME (MLP-like protein 423 OS=Cucumis melo OX=3656 GN=LOC103496877 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.4e-54 Identity = 107/125 (85.60%), Postives = 116/125 (92.80%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TrEMBL
Match: tr|A0A1V1FLY6|A0A1V1FLY6_LUFAE (Major latex-like protein OS=Luffa aegyptiaca OX=3670 GN=LcMLP2 PE=2 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 7.6e-53 Identity = 103/158 (65.19%), Postives = 129/158 (81.65%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TrEMBL
Match: tr|A0A1V1G4S5|A0A1V1G4S5_CUCMO (Major latex-like protein OS=Cucurbita moschata OX=3662 GN=CmMLP2 PE=2 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50 Identity = 98/158 (62.03%), Postives = 121/158 (76.58%), Query Frame = 0
BLAST of CsaV3_3G021420.1 vs. TrEMBL
Match: tr|A0A1V1G256|A0A1V1G256_9ROSI (Major latex-like protein OS=Cucurbita ficifolia OX=37645 GN=CfMLP1 PE=2 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 4.6e-50 Identity = 99/158 (62.66%), Postives = 120/158 (75.95%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
|