CsaV3_3G021000.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGATATATAAATGTAGGTAGTGGTGGGCATATTATTATTCCATTCACGATCGTTTATCTTCCAAAAGAGTGTGTGTAAAGAAAGAATATATATATATAGAAAAAATTAGAAAGGAAAGAGGTAGAAAAGATGGGAAGACAGCCATGTTGTGAGAAAGTAGGGTTGAAGAAAGGGCCATGGACAAGTGAAGAAGACAAGAAGCTAATAAACTTCATAGTAACAAATGGTCAGTCATGTTGTTGGAGAGCTGTTCCTAAACTTGCAGGTCTCCTCAGATGTGGTAAAAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCTGATCTTAAAAGAGGCCTTCTCTCTGATTTTGAAGAGAAAATGGTCATCGATCTCCATGCTCAACTTGGAAACAGGTCCCTTCCTCTCTCTTTCTCCCTATCTTCTTCTTCTTCTTCATCATCAACTTAATTTTTCTTTCTCTTCCCATCTCCTCATCTCATTTTTACTCTTTTACTCTTCTTCCCATCAAATCTTACTATTTAATTAACTAACCATTCTCTTTTTCTCTTTTTCTCTTTTTCGTTTTCGAAAATTATTATGCCTACATAAATTCTAACTACTATTTATGGCTTTCTACTACCTATATTATATTTTATATTTTATATTTTAGGAGTGTTTTTAAAACCAAACAAATTTCCAAAATTTTACTTTATCTGAAATGCCAAATAAAAATCAAATTCTTCTCATTTTTTCCACTTTCTTCGTTGATTTCCCAAGATAATCTCTTGATTTTTCGGCAATATTTTAGTTGATTTTTTAAAAGAGAGGTAATTAGTTTTTCTTCTTCTTCTTTTTTTCTTTTTGGCTTTTGTTTTTGGAAACAAATTATATTTCTTTTATATTTGGGAGGTTTTGAGTAAGAAGGTAAACTAAATACATTTTATTTTCTTTTTCAGATATTATTTTAACAGTCGTTTGCTAACCTTATTATTTTAAAACAATTAATTCTTCTTTGTTAGGAAAAGTAGAAGAGAAATTTTTGTTTTCTTTAAAAAAACCAGTTATTTAATTTTCAAGTTTTGATTTGATTTCTCAAAATATATTAATAAAGGTAGATAACAAAAGTTAATTTTAAATAAATGTTTATAGATTTTAAAAAAGAGATAAAAAAATTTATGATAAATTTCTAAATTTCAAAAATAACAATTTAAAAGTCGATAAACCTGTGATTACCGTTTGATAGCCCTTTCATAATCTTAAGATTACGGTCTGATATGATTAATTTTGTCATATTTATAATATGCAAAAAAATAGTTGTTTTTTTAAAAAATGTTTTTGTGTGCAATTTTTCTTATGGATAAAAAAACTGTTTATATTCTATTAATTTTTAGTTTTCTGATTCTCAAATTTTTTGAATTAAAAAATAGTTAATGTCTGTAGAAACTAAAATTGTTAATGTTTAAAATGAAATAAAATACAAAATATTTAGATTTGAATATAAAAAAATTAGGAAATATGAAATTTCAATGATGGAGTTTTCCACTATATATGCATATGCCTCTTTTATCTCTCTCACATCACTATATGATATGCAATCTTTTTATAAAGTTTCCCAGATTCTTTTTTTATTATAATTCTCTTTTTCACATTAATCAACTACTTCTTTTCACATCTAACATATGTTACATATCCATAAGATTATCACCTTTCAAAATTATATTATATAAATATATCCATAATATCATATTATTTTATTGGTAACTTTTAATTTGGGTCTCTTTTGAATAATTAAAAACTCATCATTTTTTTTTAATATTGATCTATAGATGGTCAAAGATTGCTTCACATCTTCCGGGTAGAACTGACAACGAGATTAAGAACCATTGGAATACTCACATCAAGAAGAAGTTAAGGAAAATGGGCATTGACCCTCAAACTCATAAACATATATCCATCTCAACAGATTCACACCAATCCAACCTTCCCAGCTCTCATCTCGACACGGAGATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAATAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGATTTGTGCAGTAAAATTCTTGTCAAAATGGTTGTGTTGTTGTTTTTTTTTTTTTTTTTCTTCTTTTTT ATGGGAAGACAGCCATGTTGTGAGAAAGTAGGGTTGAAGAAAGGGCCATGGACAAGTGAAGAAGACAAGAAGCTAATAAACTTCATAGTAACAAATGGTCAGTCATGTTGTTGGAGAGCTGTTCCTAAACTTGCAGGTCTCCTCAGATGTGGTAAAAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCTGATCTTAAAAGAGGCCTTCTCTCTGATTTTGAAGAGAAAATGGTCATCGATCTCCATGCTCAACTTGGAAACAGATGGTCAAAGATTGCTTCACATCTTCCGGGTAGAACTGACAACGAGATTAAGAACCATTGGAATACTCACATCAAGAAGAAGTTAAGGAAAATGGGCATTGACCCTCAAACTCATAAACATATATCCATCTCAACAGATTCACACCAATCCAACCTTCCCAGCTCTCATCTCGACACGGAGATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAATAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA ATGGGAAGACAGCCATGTTGTGAGAAAGTAGGGTTGAAGAAAGGGCCATGGACAAGTGAAGAAGACAAGAAGCTAATAAACTTCATAGTAACAAATGGTCAGTCATGTTGTTGGAGAGCTGTTCCTAAACTTGCAGGTCTCCTCAGATGTGGTAAAAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCTGATCTTAAAAGAGGCCTTCTCTCTGATTTTGAAGAGAAAATGGTCATCGATCTCCATGCTCAACTTGGAAACAGATGGTCAAAGATTGCTTCACATCTTCCGGGTAGAACTGACAACGAGATTAAGAACCATTGGAATACTCACATCAAGAAGAAGTTAAGGAAAATGGGCATTGACCCTCAAACTCATAAACATATATCCATCTCAACAGATTCACACCAATCCAACCTTCCCAGCTCTCATCTCGACACGGAGATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAATAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA MGRQPCCEKVGLKKGPWTSEEDKKLINFIVTNGQSCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSDFEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPQTHKHISISTDSHQSNLPSSHLDTEMSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDFEWICSNDTNNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI
BLAST of CsaV3_3G021000.1 vs. NCBI nr
Match: XP_004145848.1 (PREDICTED: protein ODORANT1-like [Cucumis sativus] >KGN57790.1 hypothetical protein Csa_3G303630 [Cucumis sativus]) HSP 1 Score: 535.8 bits (1379), Expect = 8.4e-149 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. NCBI nr
Match: XP_008457024.1 (PREDICTED: protein ODORANT1 [Cucumis melo]) HSP 1 Score: 455.3 bits (1170), Expect = 1.4e-124 Identity = 241/268 (89.93%), Postives = 245/268 (91.42%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. NCBI nr
Match: XP_022948332.1 (transcription factor MYB20-like [Cucurbita moschata]) HSP 1 Score: 362.5 bits (929), Expect = 1.3e-96 Identity = 201/267 (75.28%), Postives = 221/267 (82.77%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. NCBI nr
Match: XP_022997842.1 (transcription factor MYB20-like [Cucurbita maxima]) HSP 1 Score: 353.2 bits (905), Expect = 7.7e-94 Identity = 198/267 (74.16%), Postives = 219/267 (82.02%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. NCBI nr
Match: XP_023525317.1 (transcription factor MYB20-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 350.5 bits (898), Expect = 5.0e-93 Identity = 197/267 (73.78%), Postives = 217/267 (81.27%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TAIR10
Match: AT1G66230.1 (myb domain protein 20) HSP 1 Score: 267.7 bits (683), Expect = 7.7e-72 Identity = 121/132 (91.67%), Postives = 129/132 (97.73%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TAIR10
Match: AT5G16600.1 (myb domain protein 43) HSP 1 Score: 253.1 bits (645), Expect = 2.0e-67 Identity = 149/334 (44.61%), Postives = 184/334 (55.09%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TAIR10
Match: AT4G22680.1 (myb domain protein 85) HSP 1 Score: 241.9 bits (616), Expect = 4.5e-64 Identity = 109/131 (83.21%), Postives = 120/131 (91.60%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TAIR10
Match: AT4G12350.1 (myb domain protein 42) HSP 1 Score: 237.7 bits (605), Expect = 8.6e-63 Identity = 115/164 (70.12%), Postives = 134/164 (81.71%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TAIR10
Match: AT5G14340.1 (myb domain protein 40) HSP 1 Score: 218.4 bits (555), Expect = 5.4e-57 Identity = 108/176 (61.36%), Postives = 133/176 (75.57%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. Swiss-Prot
Match: sp|Q9C7U7|MYB20_ARATH (Transcription factor MYB20 OS=Arabidopsis thaliana OX=3702 GN=MYB20 PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.4e-70 Identity = 121/132 (91.67%), Postives = 129/132 (97.73%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. Swiss-Prot
Match: sp|Q50EX6|ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida OX=4102 GN=ODO1 PE=2 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 3.3e-64 Identity = 118/161 (73.29%), Postives = 133/161 (82.61%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. Swiss-Prot
Match: sp|P80073|MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens OX=3218 GN=PP2 PE=2 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 6.7e-57 Identity = 95/127 (74.80%), Postives = 113/127 (88.98%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. Swiss-Prot
Match: sp|P81394|MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus OX=4151 GN=MYB315 PE=2 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 2.5e-51 Identity = 99/187 (52.94%), Postives = 127/187 (67.91%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. Swiss-Prot
Match: sp|Q9LE63|MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 3.2e-51 Identity = 95/150 (63.33%), Postives = 115/150 (76.67%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TrEMBL
Match: tr|A0A0A0L723|A0A0A0L723_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G303630 PE=4 SV=1) HSP 1 Score: 535.8 bits (1379), Expect = 5.5e-149 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TrEMBL
Match: tr|A0A1S3C586|A0A1S3C586_CUCME (protein ODORANT1 OS=Cucumis melo OX=3656 GN=LOC103496805 PE=4 SV=1) HSP 1 Score: 455.3 bits (1170), Expect = 9.5e-125 Identity = 241/268 (89.93%), Postives = 245/268 (91.42%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TrEMBL
Match: tr|A0A1S3TNY7|A0A1S3TNY7_VIGRR (protein ODORANT1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757307 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 8.2e-76 Identity = 176/322 (54.66%), Postives = 205/322 (63.66%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TrEMBL
Match: tr|A0A0L9U936|A0A0L9U936_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g260800 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74 Identity = 171/309 (55.34%), Postives = 201/309 (65.05%), Query Frame = 0
BLAST of CsaV3_3G021000.1 vs. TrEMBL
Match: tr|A0A0S3RZU3|A0A0S3RZU3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G367800 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74 Identity = 171/309 (55.34%), Postives = 201/309 (65.05%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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