CsaV3_3G020390.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020390.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 16469938 .. 16470202 (+)
Sequence length168
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTTATTTCTAGGTTGTCAAATGAAGGAAATGTTGTGTACGGAGTAAATGTCATTGAAGGTTGCATGAATGTAGATGTGTATTGTGAAGTGAACAGTGGAACTTCATATCGTAAGTGATGATTGTTTGATACGTTGGAATCCTGAAAATGGTCATCTTCTATATGAATAAGATGATCGTCATGTTGAGTTGGATTTTCTTTGTCCAGATGTTGAGGTTGGTATAGAAGTGACATTGCTTCTATGTTCACTTTGTGACTAG

mRNA sequence

ATGGTGTTTATTTCTAGGTTGTCAAATGAAGGAAATGTTGTGTACGGAGTAAATGTCATTGAAGGTTGCATGAATGTAGATGTGTATTGTGAAGTGAACAGTGGAACTTCATATCATGTTGAGGTTGGTATAGAAGTGACATTGCTTCTATGTTCACTTTGTGACTAG

Coding sequence (CDS)

ATGGTGTTTATTTCTAGGTTGTCAAATGAAGGAAATGTTGTGTACGGAGTAAATGTCATTGAAGGTTGCATGAATGTAGATGTGTATTGTGAAGTGAACAGTGGAACTTCATATCATGTTGAGGTTGGTATAGAAGTGACATTGCTTCTATGTTCACTTTGTGACTAG

Protein sequence

MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD
Homology
[Close]
BLAST of CsaV3_3G020390.1 vs. NCBI nr
Match: KGN57726.1 (hypothetical protein Csa_3G263240 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 4.3e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD 56
          MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD
Sbjct: 1  MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD 55

[Close]
BLAST of CsaV3_3G020390.1 vs. TrEMBL
Match: tr|A0A0A0LCE3|A0A0A0LCE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263240 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD 56
          MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD
Sbjct: 1  MVFISRLSNEGNVVYGVNVIEGCMNVDVYCEVNSGTSYHVEVGIEVTLLLCSLCD 55

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57726.14.3e-23100.00hypothetical protein Csa_3G263240 [Cucumis sativus][more]
BLAST of CsaV3_3G020390.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020390.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCE3|A0A0A0LCE3_CUCSA2.9e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263240 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G020390CsaV3_3G020390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G020390.1.exon1CsaV3_3G020390.1.exon1exon
CsaV3_3G020390.1.exon2CsaV3_3G020390.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G020390.1.cds1CsaV3_3G020390.1.cds1CDS
CsaV3_3G020390.1.cds2CsaV3_3G020390.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G020390.1CsaV3_3G020390.1-proteinpolypeptide