CsaV3_3G017760.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G017760.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 13334251 .. 13337402 (-)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGAGGACCATAAACAAAAGAACATATTGCAAATTTGTAACATTCCAAAATTCAAGGTAATTTCTAATTTAATTAGCTTGGATGTTGTATATATTCTTAGCAGATTTGCCTTTTCAATCATTTTTCTAATGAAAGTGGTTTTCATTATTGTTATGATTGTTTATTTGTTTTAAAAGGTAGGGTTTGTTAGGGTAACGTGCAATTGAATAAAAGAGAGTAGAAATTAGGAAATTTCCTTCTTCTTCCTCACGCTGAACGACGCTCACTATTGCTTCTGGCCGTTCAACTCCCTCCCACGACACCACGTCCAGCCGCTTCGCCCACACGCCGCCGACCGTCTGTCAAGTAGCCGTGAGCGACGACGTCTCCACGCTGTGAGCCGCGCCATCTCTTTCTCCGGGCCGCACGCCGTGAGCGAGCCGAGCTTCTCCTCCAACGCCGAGCCCCGCTGCGCCGATCTTCCCTCTGTCCAATCTCCTCCCCGGTGGGTTTTGGGTGAGTTTTTCGGCAATTAGTGAAGTCTTGTTTTGGGTTTCACCACCCATTACAGAACTAAATTTAAGGATAATTTGAGGGTTAAAGTTGGGGCTTTTCCTTGGTCTGAAGGTTCCCTTTGGAGAAGTTCTTGAATCGATTTGTGGTTTTCCATCCAGGTTGTGAAGTGAAAATTTTGGGTAAGCATTTGGAGGAGTAAACTGGGTTTAATCAATAATTTTGTTTGTCCAAAACTATTAATTTAATTTTAGTTATGTACAGGTTGAATTTTGGATTTCCAATTGCAATCATAATTTTCTCGCTCGAGCTTCGACCTGAACAGTGAACCTAACTTTATGATTGATAATTGATATGTGTGCTTCGACTGAAGTTAACCTAACCTTATGATTGATATGTGTGCTCCTACGGAACCATCAACTCTAAAGAATTGTTACAAAGAATGAAGTGAATTTTGATGAGGAATTGAAGAAATGTCTTTGGAATTATATTTGATAACTTAAATTTAGTATGCAATATCCATAATTGAGAAATTAGGGGTATTACTTAATAAGGTTTAATGTCAATCTTGCCTAATCAAAATTTGATTTGAATCTCATTGTTCTTACACTAAGTACTCTACTTGAAAATTAATCATGGAAATCAAGCAATTAATTGACCAAGAATTATGGTTTTTCAAGGCATTTTTTATGAAAACAGTGCCCAATGCCTTTTACTGCTATAATTCTTCAAGGATCTCTACAGTTTGTTAATTGAATTTTTGAAGAATAATTTCTCCTCACAATTGCACTTGAATTTAGTTTCTTGAATGTCTTTTACTTCACAAGATTGCATTCCCATAATTTCTTCTTGTGTTAAAAGTTATTAATCAATTCTTTCTTGAGATTTATATTTCAAGAATTTTTTACTGAATTCTCTTGAATATTCTAATTGCATTCCTTTATGCACAATCATAAGTCTTTCGTTCAATATCTCGAATCTTTATATCTATTTTACATTATCAATTCAATCTTTTTAATGTCCTACCAAAAAGAGCTTTCAAACTACAGGATTTCAAGTGATCATCCATGTTTTTTAGGTTTTATTTCATTTTTACTTAATAAAATGGTTAGATCTTGCATTGTTTTTATTTTTTTATTATTCTTTTAAAAGTGTTTTCAATTGATGACGACCGTACTTAATTTAGAAAAGTTGGTGGTTACAAAATCATTGACTTAAAAAAATGCAGATTGAGAGGGAGAAGAAGCAAAAAATTAGAGAAATTTTCTTAATTTCACAAGAGATGACGTATACAAAATGCTAAATAAGCGTTTATTTTAAAAAACTTAGATCAAATTTAATTAGGTCTTCCATTTTGAGCTATCCATGTCATTTTTCCACTAATGTGTATTATATTATTTAAAACTAAATCTAAGTCCGTCCATGCAAAGCATATTTTTCAACTCATAAAAGATTTTTATTCTTTCCAATCTTTTTAGGTTTTGATATGCTTTTTTTAGTAAAAGAAAAAAAGAAAAGAAAAAGAGTCAAATTCACTATTTTGTTCAAAGTGCATGTGAAATTGCCGTTTACATTGAGGAATAGAAAGTTTTTTCAAACAAACAAACAAGAAAGGGTTTAAAAATTTTAAAATTAAAATTAAAATTAAAATAAAGAAACAAAACAAAACAAATAATTTGGATCTGCCGTTCTTCGAGCAGATTAGATCCGGAGATTCGAAAATTCTTCGTTCTTCGTCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCGAAGGTAATTTTACTTTTTCAATCCTCTTTTTCGCTCTCCATTACAATATGTTTCACACTAAATTTTTTTTTTCTTCTTCTTCTATATTCTCTGGATCTGATTATTCTCTATCCGTTTCTCTCTTATTTTCTTTTCCTATCTTGTTGATATATTAATTTTTTGATGCATTTATGATTCTGATTTAATTCAATTAAGAAATTTTGGGAATTAAAAATGATCTTTGTCATCTCTGTTTCCGAGAAATGAAATATAATGTGGTATATCGTTGGATTGTGTCTGGTTTAGCTGTATGTCAAGTTGTTGCTTGGAAACTAGTAACAGCATCCTGTTGTTCTTAGTTTTAAAGTTGATTAGGTAGTATTCAAGATTAATATGGTGGTACGGTGGGTGGAAACGTGGATCCATGGAGAGGGGAGTGAACAATGTAGTTGGAACTGGAAGTTCATAACTTAGGTATTTGGAATCTGCATCTATTGAAATAAGAATAATGAAATCTACGTAAGTTCTTTTGTTATTATTATATGTTGCTGTGCATTTCACTTTCCTTATTATTATCTTTGGTTCTTTTAATGTTGTGTGGGTGTGAGTGAGAGCTTAAGGAAGGTTGACTGGTAGATCTTTCTGTTTCTGATATTGGATGGTATGATTTCTATGGATGAAGTATTGTCATATTATGTCTATGATTTCTGTTTGTCGACTAAAAAGTGGGTTGGTTCCATTTCAGAGAAATGGTTGCCCATCTATAAATTGGAGCTAGCTCTTATATTGGTATTTCAGTGAAAGATACTGCCAGTTCATTTGCTTCTGACTTATAACCAGTCAACCTGCAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTTCTAGTTAA

mRNA sequence

ATGAAAAGGAGGACCATAAACAAAAGAACATATTGCAAATTTGTAACATTCCAAAATTCAAGCCGCTTCGCCCACACGCCGCCGACCGTCTGTCAAGTAGCCGTGAGCGACGACGTCTCCACGCTAAACAAAACAAAACAAATAATTTGGATCTGCCGTTCTTCGAGCAGATTAGATCCGGAGATTCGAAAATTCTTCGTTCTTCGTCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCGAAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTTCTAGTTAA

Coding sequence (CDS)

ATGAAAAGGAGGACCATAAACAAAAGAACATATTGCAAATTTGTAACATTCCAAAATTCAAGCCGCTTCGCCCACACGCCGCCGACCGTCTGTCAAGTAGCCGTGAGCGACGACGTCTCCACGCTAAACAAAACAAAACAAATAATTTGGATCTGCCGTTCTTCGAGCAGATTAGATCCGGAGATTCGAAAATTCTTCGTTCTTCGTCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCGAAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTTCTAGTTAA

Protein sequence

MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDPEIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS
Homology
[Close]
BLAST of CsaV3_3G017760.1 vs. NCBI nr
Match: KGN57444.1 (hypothetical protein Csa_3G186710 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDP 60
          MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDP
Sbjct: 1  MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDP 60

Query: 61 EIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS 99
          EIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS
Sbjct: 61 EIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS 98

[Close]
BLAST of CsaV3_3G017760.1 vs. TrEMBL
Match: tr|A0A0A0L8X8|A0A0A0L8X8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186710 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDP 60
          MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDP
Sbjct: 1  MKRRTINKRTYCKFVTFQNSSRFAHTPPTVCQVAVSDDVSTLNKTKQIIWICRSSSRLDP 60

Query: 61 EIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS 99
          EIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS
Sbjct: 61 EIRKFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS 98

The following BLAST results are available for this feature:
BLAST of CsaV3_3G017760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57444.11.6e-49100.00hypothetical protein Csa_3G186710 [Cucumis sativus][more]
BLAST of CsaV3_3G017760.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G017760.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G017760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8X8|A0A0A0L8X8_CUCSA1.1e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G017760CsaV3_3G017760gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G017760.1CsaV3_3G017760.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G017760.1.cds4CsaV3_3G017760.1.cds4CDS
CsaV3_3G017760.1.cds3CsaV3_3G017760.1.cds3CDS
CsaV3_3G017760.1.cds2CsaV3_3G017760.1.cds2CDS
CsaV3_3G017760.1.cds1CsaV3_3G017760.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G017760.1.exon4CsaV3_3G017760.1.exon4exon
CsaV3_3G017760.1.exon3CsaV3_3G017760.1.exon3exon
CsaV3_3G017760.1.exon2CsaV3_3G017760.1.exon2exon
CsaV3_3G017760.1.exon1CsaV3_3G017760.1.exon1exon