CsaV3_3G001360.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G001360.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 1048261 .. 1051388 (+)
Sequence length471
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGACAAGCAACTCAACTGGAGCACTATTACTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCATTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAAGAAGGAAGTGGATCTAAGTTGTTGCGTATATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAAGCCTTACGTTTATTTTATGTTTTTAGATTATTTGATCAATAAATGTAAGCTAATAACTATCTGAGACTAATTTAATGTCACCCTTTAAGAATAATCTTTTATTATCTTCTTTGTGACCACCTCACATTTAAATGTAGAATGTATTTTAGCCCATATGGAGTTGCCTAACCATATATGGCGAATTTTAAATCATCTAAAATATACAACATTCTTATTTTGGTTCACAATTTAGATCATTGTATTTCAACAGTAGGCACAAAGAAACACAACGACAATGTTTATTGTAAGAACACAATTCATTTAAATTTGGAAAGAGACGAAATGCCACAATATAAACCGACTGTTGTACATCACACATTTCAATTCCTTTCTTCCTTTCGAACTAAACTTACTGATTATTAGTTGGTAAATAAGCCATTACGTACAATTTAGTTTTTGTCAATCCAACTATGCTTATTTGAAAATTTTGACAAATTTTTGTTGTGATTAACTTTATGTACATTGATAGAATATGTCACCACTTTATACGTGCGTGACATTGGGTACATTTTATATCTAAAGTCATTCTTTGGTCTTTTTTATTATGTTAAATTATTTAAAGTGAGAAACACATCTATATATATTTATAAGTACAACAAAATTTCAGAACCTATAAATGATAGACCGACATAATAGACACCAATAGGGTCAACTAGTATCTATCGATATTTATTACGGATGGATTATGAAAAATTGTTATTTTGATTCATTTGAACTACATTAGACAACAACACTTTAGTTTAATTAAGTAATTAATATTTTTTTCAAGAATGGTTCATTATGGTTAAACCACATACTTAGTTGATGAACTTTTAGGTATATATATATTTATTAGAGACCAAGTAAAGTTTGTGAACTAAAAACTAAAAACGAAAAGTCGAGGGACTAAATAAAAATAAATGCGAAACTTGAAGGACTAAAAATAAAATGTCTAGGGACTTAAATAATGACCTCGCCGACTTATGGGGAGTAGTACGACGCCGTTTTGGTTTCATATATATGCCATTTTCATAATTTGTCGTAATAACCTTTTTTTTTTCCTTTTTTTTCCTTTTTTTTTTTCTTCTCTTTCCTCTCGTGTGTTCTTCGTCCCATGACCTGCTCATCTACTGCAAATTGAAATCCATCACATGTTATGTTAATTTTTTTTGTTACATGTGAAAGTTGATGGTAAGATTTTAGTTCTATTGTCTTCTGTTAATTTTTCTGAAGTTTCTATTTGTGTTTCGGTTGTGATTTCAGGTTTTAATCATCCTGTTTATGGCAGCATCTAGATTTTTGGGTTTGGAGTATTAATTATGCAGTCAAAGATGATAAAATCCTGCAGATGATTCTGATCTGTTCGGTCTGAGCTGTTTTGATTAATTTTTTATTGCAATTTTAGGTTATCTTTTGTGATTTTTTGTTTGGTTTGAGATTTTGAGTTGAATGATTGGTTAGGGTATTCCTAACTTAGGTTTAGCAATTTTCATTAATTATTGAATTTTTCAGCTCATAGCAAGGTTTTAGCATCAGTATAGGATGGGAATCTGGGATGAAATTTATCTTGGGAGGAGAAGGATTATTTTGACTGTCAATTTTAAAATTAGTGTAACATCAATTGTTGAAGTTCTGCTTGTGTTATATTGGTTTTTTTCCTCTTTATTTTTTCACTTTTCGATGAATCAATCAACTTTAAGACTTTTAGTGGCACCTGGTCTTTTGCTGTAACAACACAATTCCGTTTTGTCTTCCCCTTCCTTCTTATCTTCTTTTTAGTAATGCCTTCTCATCGAAGATTTAGCATAGATTTCCTCCAACACTAATCTATGGACTTGCTCTTTTGAAACCCACATGAATGGATATACTATTTTTTATATTTCCATTTTAATGATTTATTTTTTCAAGAGCCCTACCTGAATGGCTTGGTTGATTCTTGCTGTGCTCAAATATTTATGGTTCTCCTAGTGATAAGTGTTCTACATATGATTTATTTGGATGCTCGTCATAAAACTTATGTTTCAAAGGTTTTAGGACAGAGTTTAGCATCTTAATTTTGATTGGAAGATCATGCATGTCGTAGAAGCCAAATTTTTAGAAAATTAGTAGCTTTCATTTTGGCTCAGAGTACTAAATATGTACAAGCTTTGTAGTCTAATGATATGATTATCACGGTTTTTTAATTGCTTGGAGGTATCTAAAATTTTTCTGCATGTCATGGTTGTATTATGTATTATTGGAAAACCAGTATTCGTCCTTTGATACCCTTCTGAAATATAAATTTGTTTTAAACTGGAATCGCATTATTTTCTAACTTTATAGCTTTATTTTTGTTGGCCTTTTCCTCTATATTGCTTTACAGTCTGGCAGCTTGCTTCTCGACACTTCCTGGTATGTTCTAACTCTCCGAGCTAAAGTTCTTGTACACACACCATAATTACATAGTAAACTTGGTAGATGAGCGACCAATATGAGTTTTAAGCTCAAGTCCTCATACATGAAGATGGGAAAATAAACTAGTATCACGTTTCTTAATTTTTCTCCCTGACGCTTGCCCACATAATATAGTCTAGTATTTATGACTGTTCAATGTTGACTCATTCAATAGCCATATTTTCACTTTCCAGGGTTTTCCAAGTTCTTCGCATGGCTTTCTTCACAAGTCCCGTGACTGTTTAGGGCGTGCTCTGGATTTGTGA

mRNA sequence

ATGGGAAAGACAAGCAACTCAACTGGAGCACTATTACTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCATTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAAGAAGGAAGTGGATCTAAGTTGTTGCGTATATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTTCTGGCAGCTTGCTTCTCGACACTTCCTGGGTTTTCCAAGTTCTTCGCATGGCTTTCTTCACAAGTCCCGTGACTGTTTAGGGCGTGCTCTGGATTTGTGA

Coding sequence (CDS)

ATGGGAAAGACAAGCAACTCAACTGGAGCACTATTACTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCATTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAAGAAGGAAGTGGATCTAAGTTGTTGCGTATATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTTCTGGCAGCTTGCTTCTCGACACTTCCTGGGTTTTCCAAGTTCTTCGCATGGCTTTCTTCACAAGTCCCGTGACTGTTTAGGGCGTGCTCTGGATTTGTGA

Protein sequence

MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNFWQLASRHFLGFPSSSHGFLHKSRDCLGRALDL
Homology
[Close]
BLAST of CsaV3_3G001360.1 vs. NCBI nr
Match: KGN55722.1 (hypothetical protein Csa_3G008300 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNN 124
           YNN
Sbjct: 121 YNN 123

[Close]
BLAST of CsaV3_3G001360.1 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_5G381840 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = 0 

Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNN 124
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNN
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

[Close]
BLAST of CsaV3_3G001360.1 vs. NCBI nr
Match: KGN46111.1 (hypothetical protein Csa_6G054340 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 5.8e-25
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N T A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNN 124
           KCQVELYNYYFN SKKE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNN
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 119

[Close]
BLAST of CsaV3_3G001360.1 vs. NCBI nr
Match: KGN46140.1 (hypothetical protein Csa_6G056570 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-08
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 3  KTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDR 51
          K S STGALL++ +LSLLVVDSLALV PS +DD+GIS IWS W+D++R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

[Close]
BLAST of CsaV3_3G001360.1 vs. TrEMBL
Match: tr|A0A0A0L535|A0A0A0L535_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.6e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 

Query: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNN 124
           YNN
Sbjct: 121 YNN 123

[Close]
BLAST of CsaV3_3G001360.1 vs. TrEMBL
Match: tr|A0A0A0KQ41|A0A0A0KQ41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 8.8e-46
Identity = 90/119 (75.63%), Postives = 106/119 (89.08%), Query Frame = 0 

Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NST  LL+VVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNN 124
           KCQVELYNYYFN SKKE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNN
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

[Close]
BLAST of CsaV3_3G001360.1 vs. TrEMBL
Match: tr|A0A0A0KEB8|A0A0A0KEB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.9e-25
Identity = 60/119 (50.42%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 5   SNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N T A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNN 124
           KCQVELYNYYFN SKKE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNN
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 119

[Close]
BLAST of CsaV3_3G001360.1 vs. TrEMBL
Match: tr|A0A0A0K8R6|A0A0A0K8R6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 3  KTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDR 51
          K S STGALL++ +LSLLVVDSLALV PS +DD+GIS IWS W+D++R
Sbjct: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51

The following BLAST results are available for this feature:
BLAST of CsaV3_3G001360.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55722.12.4e-63100.00hypothetical protein Csa_3G008300 [Cucumis sativus][more]
KGN50979.11.3e-4575.63hypothetical protein Csa_5G381840 [Cucumis sativus][more]
KGN46111.15.8e-2550.42hypothetical protein Csa_6G054340 [Cucumis sativus][more]
KGN46140.13.8e-0868.75hypothetical protein Csa_6G056570 [Cucumis sativus][more]
BLAST of CsaV3_3G001360.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G001360.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G001360.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L535|A0A0A0L535_CUCSA1.6e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1[more]
tr|A0A0A0KQ41|A0A0A0KQ41_CUCSA8.8e-4675.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1[more]
tr|A0A0A0KEB8|A0A0A0KEB8_CUCSA3.9e-2550.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1[more]
tr|A0A0A0K8R6|A0A0A0K8R6_CUCSA2.5e-0868.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008502Prolamin-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G001360CsaV3_3G001360gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G001360.1CsaV3_3G001360.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G001360.1.exon1CsaV3_3G001360.1.exon1exon
CsaV3_3G001360.1.exon2CsaV3_3G001360.1.exon2exon
CsaV3_3G001360.1.exon3CsaV3_3G001360.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G001360.1.cds1CsaV3_3G001360.1.cds1CDS
CsaV3_3G001360.1.cds2CsaV3_3G001360.1.cds2CDS
CsaV3_3G001360.1.cds3CsaV3_3G001360.1.cds3CDS


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 57..110
e-value: 3.7E-6
score: 26.9