CsaV3_2G034080.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G034080.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 22567251 .. 22567524 (-)
Sequence length189
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGCCTCTAAAAGGGAATTGGGAGAAATGGGTGGGACAAAACACAGCGCAGGAGGTGAGAAATGGGAATGATAACGTGGGGTCGATTGATAGGAAATGGGGTGGCAAAATAAAAATGGTTGTTTATGATAATTAATTAGAAAAATCTCCATCATAGCGGTTGGCGATTCATCACTGCCCTGCGTTCTGTTATGCACGATACACAAGAAAGTAGGAGTTGGGATATGGCTATGGGTGTGGCCTGTGGTGGCTATGGCGATTCGAATTAG

mRNA sequence

ATGGGGTTGCCTCTAAAAGGGAATTGGGAGAAATGGGTGGGACAAAACACAGCGCAGGAGAAAAATCTCCATCATAGCGGTTGGCGATTCATCACTGCCCTGCGTTCTGTTATGCACGATACACAAGAAAGTAGGAGTTGGGATATGGCTATGGGTGTGGCCTGTGGTGGCTATGGCGATTCGAATTAG

Coding sequence (CDS)

ATGGGGTTGCCTCTAAAAGGGAATTGGGAGAAATGGGTGGGACAAAACACAGCGCAGGAGAAAAATCTCCATCATAGCGGTTGGCGATTCATCACTGCCCTGCGTTCTGTTATGCACGATACACAAGAAAGTAGGAGTTGGGATATGGCTATGGGTGTGGCCTGTGGTGGCTATGGCGATTCGAATTAG

Protein sequence

MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGDSN
Homology
[Close]
BLAST of CsaV3_2G034080.1 vs. NCBI nr
Match: KGN63163.1 (hypothetical protein Csa_2G406120 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 3.1e-30
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60
          MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD
Sbjct: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60

Query: 61 SN 63
          SN
Sbjct: 61 SN 62

[Close]
BLAST of CsaV3_2G034080.1 vs. TrEMBL
Match: tr|A0A0A0LMX9|A0A0A0LMX9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406120 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-30
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60
          MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD
Sbjct: 1  MGLPLKGNWEKWVGQNTAQEKNLHHSGWRFITALRSVMHDTQESRSWDMAMGVACGGYGD 60

Query: 61 SN 63
          SN
Sbjct: 61 SN 62

The following BLAST results are available for this feature:
BLAST of CsaV3_2G034080.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63163.13.1e-30100.00hypothetical protein Csa_2G406120 [Cucumis sativus][more]
BLAST of CsaV3_2G034080.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034080.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G034080.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMX9|A0A0A0LMX9_CUCSA2.1e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406120 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G034080CsaV3_2G034080gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G034080.1.cds2CsaV3_2G034080.1.cds2CDS
CsaV3_2G034080.1.cds1CsaV3_2G034080.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G034080.1.exon2CsaV3_2G034080.1.exon2exon
CsaV3_2G034080.1.exon1CsaV3_2G034080.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G034080.1CsaV3_2G034080.1-proteinpolypeptide