CsaV3_2G031880.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G031880.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 21009636 .. 21016676 (-)
Sequence length304
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCAAAATTGACTTTTTTTCCTTCGAAATTAGGTTTATTTTCACTTAGTTTATTACCATGTATTAGAGGTAGATTTAGACTAGATTAGCATAAAGAGTTCAAACTATTCAATCAAGAGAAAATGGCAAAATCTGAAAAAACACACCCTAAGGCCCAATTATGCATGGGGAGAGGGAGTGGTGAAGCCTCAAACTGAATAGTTCGGTTAAGAATGAGGTATGTTCTTTCCTATTTGGGATTTAGGAAGATAGTTGAATTCTGTACATTCTCTGTGAATTGATCTTGAACACACTTGAAGATGCAGTATCCATGTAGCTATGATCTATCTATCAGGATTGCTTTGGATTTTAGGCCTTAATCTTTTCATGAATGCAATACCAAAGAAACATTTGGAGAAGCTTTTCAGGTTAAATATATCTTTCACTTTGTATAACACATATTCATAAGCCAGAATAATATTTCTGTATTTTTGTATGCTATTAACTAATTGGATGCTTCATATGCCTCAATTTCATTATGCTCTACGATTTGATTCTTAAAAGTTTTACTCTTCACTTTTCTCTCCTAATTATCTGGATGCTTCATATGGAAAAATGATGAACAATACTAGCTTCTTTTTTGGGATCAATTCAACAATTTATTGCTTTTGACCTAAGAAAAAAACAACCGTCTTTTTAGCTTTTCAAGAGATTGGACTCTGCTTTTCTTTGTATGTTAATTTTCTTTACAAAGACTTCTAAGTTCTCTGTTTCTTTTCTTAATATCCTAAGTTAAATCGATCAATTATATAGTTTGCACTAGTAATTCCTTCAGAAAAAATAAAATAAAGTGATAAATAAATTTATAGTATAAACATAATGTAAAGCATCAGTACTAGTTCTTCTATCATTTGCGTGGTTTTGAAGTCAATAGCCATCATCTATCGAAAGTACATGATTAGGAGAGTGCTTCTAGAATAGTTTATATCACTCGTCTTTACAAAACTAATTTTGATGACATGAGAAGAGTATTTCAAAGCGTAAAATTAAATATTTATTGAAAATTAATGACAAAAGTAATTTGCCATTACAAAATTATTGATCCAACTACATTGCAGGTGGGTGAGCCTAATCCTAAGCCATTGGTTGACACAGAAGAACATTACAGAAAGACACAGGTTACAGTTTACTTGTTTTTCTATATGATTGATTTGTGATTTTTTATTTATTTATTTATTTATTTATTTATGTAAATATGTTCTACTTCTAACAAACATGTTTTAACTTTTTAAAACAACTAAATAGTCAAAATAAATCATTCATGTTTCATTCATATAAACAGAAAAACTTAATAAACTAAAGAAAGATCAAGAATTGTAAGAACTAGAAGATTGCACATTTGACTGTGATATGTGGTAATTAGTAGGTAGCCATATGTAGATTTAGAAAAAGGGTCTATATTTAGATTACAACATTGAAATTTTTTCTCAGATTCGTATACCCCCACACTTAGGCTAAAAAAACAAAAGAGAAAAAGAAAAGCATACATAATAACTCTATCAGATTTGCTAGAAACCAGAAACCAGAAAGGCAATGGTTTATTCTTTACTAACGAAATAACCAAAATTAAAGAACTTATACCTATGGCCATTCACACTGCCGCCCCTACGTTCAACCATCTCTACCATTTTTGTTACAAACCTAAAAGTGGTCTTCCTCGTTTATCTCCATGCTTTTCTCCGTAACAACTTTAGTGGTCAACTAACCTTAAGCCATCGAGCCCCAAAATTACTGTCAGCCAATTACAGACAACATTCATCTCCTCAGGAATGGTGTAATGTCCCAGCCTGCATGGCAAGATCCCATCTTTTTGTTACTTGTTATCAGACAAACAAAACAAGAAGCACTAGAAAGCAAGATACTAACATACCCATTATAGGTTTTAAATGTTAGATTTCTAAATCCAGCTGAGCTTAAAGTATGTGCAGATTTCTCGCCATGTTTGTAAGCAACGACATCATCACCTGTAACCAACAGCATGTAATATGAAACTGATTCTCATGGTAATTAAGTGTACCTTGAATAAAATTCACTTGATATAGGACACTTCAATCCAGCAGCAGTTCCAACTTGATTGGAATGTAAATAAAAGCAAAAAATTAAGCATGGGCATTTGGAAAGACAGGTAATGTTGATCTGATGGGTTAGAGTTACTTTTGGTCGATGGAGAAAAACAATTGAGTCTTGCATCCATCATTACAATCTCAAAAATCATTCTCTTAAACACTTTTGAGTTAAGTCACTGAAAATCTCAAGATTCCTATGGCTAAGTGACTTGCATAAACTAAAGGCTTTTAAACCAGCATCCAGAAGCCTAGATGTTTTTTGGAATAATGGCTGTGCAACCTGAAAGGCGAGAAGCTAAATAAATTGGTTTGCTGCCACGTCCATAAGCAGTCAGTAGGATTAAGGGAACTGAGAGAAATCATTTTTCTCACAAGAACGGTGATGAAAAGCATTGCAAACAAATCAGTGATAAATTACGACATATAAAAATGAATGGATCAGCAAGTGGGATGTGGTGCTCAGTCGGCATCCATTGTGGGTAACTATCTTTCTATCAACATACAAAAACAATACAAGTACCTGAACCATGACAGAGTAAAATGGGTAGACACGCAGCCCGCCTTGCAGCTTCATGTGACACATTGATCTGGTTCCTCAAAGATCTACAACAAAAAGCATTTAATGAAAAAAAATAAGTGTACTTAATCAATAAATACCACTTATGTAGGCTGTACTGTGTGTTTCTGCCTCTTTACAGTTCAAATAACAAAAGTAAAACCTTGAACAAGGAAGCCAGCCACTAAGCCCAACAACTGCACTTAGGTTAATGGGGTATAGGTTTCCATTTCCATATTGCCCAAGAATACGGCATGATGCAGAGTAAATTGCAGTTGCAGCACCCATACTGAAGCCTCCAATACCCAGTTTAACTGTTGAAGCATAGTAGAATTAATAAAAACTCCAGAAAAAGGGAAAAAACGGCACAACTACATCTTAACAAGTGAGAAAAGGAATTCTTGGATTGTGAGGGTGGCAATGGAGGGTTACAGAATGTCCTCCAAGTATCTTAAATCAGATAGAGTGAGAAGAAAGCAAATTTGTACATCAAACACCAAGTATCAGCTGCAAAAATGATTTGAGACGGCAGATGAAATCTATATCTATACCCATCTACCTACAATTCATAAACCATAACTGAGCTTCATTTCGAAACCATATAAGAATTTCCGGTTTGACTCCTTCACAGAACAATATTGGGTAATCTAATAAGCAATTCCATCTCCCTTATGTGTTGACCAACCAGGGGAGTATCATACTGATGATCAAGTTAAATAATGACTATAATAGTTCCCTATAGCCATGATAAAGTTGAAAACTAAAGACTCTAATTATTATTATCGTTTTGGATCTTTGTGATGTTCAGATTAGAGTACCCACACCTCAACTAATCATCTCATAGGACAACCAATTTACCCTACAAATATTGATTACCACAACACTATTATCCCAACCAGGTAATCACGGAAGGTTTGAACTCATTTTCCAATGTCTCTACTTTGTCCGCTAGCTCTATTGACTATTAGGTCAATGTGCAGGGTGGTCAAATGATTAGCGACTTATTATATAGTAATGCTAGAATAGTTGCATAAGTTAAGTAACAAACAGCAGCTCAGCTGAAGGGAGGGGAGGGGGGGGATATAATGTGGGGAAGATGTTAAGTATCAGCAGTTTCAACAGGTAAGCACATAATAGTTGAGTTGATAGTTAAAATGCTTTTCAAGAAGAAACATACTATCAGCAGGTTCTGTAGACAAAAGATTAGCAACATGTGATGCTGCAGCATCCAAGCCTTCTAAATCATCAGGAGAATCTTCAGAAATATCTCCCACATCAAACCCTGATACGAAACAGGGGAGGTCCTCATAATGTTAAAAATTTGAGTTGAACTAATTCCAGGTACAATTATATTTTTCTCATTTACACTAAAAGCTAAGGAGATATTTGGCTCCCAGATTTAATAATTTTGTCTACGAGATTTGGGTAGTTTATTTCTGAATTGCACAAAATAATTTCAAGTTAATCTAGATTTGAATAATTTCTGTTTGATACAAGTTCTCTAATTTGTAAACACAGAACACTAGCACATAGAAGGAAGGTGAGTTTCATCAACTTGAGTTTATATAATACGAGTTTAAATTCCTTGTGAGATTAAAAAATTCCTAGCATGAGACAAACAAATCAACTTGCCAACAGGATGACTTATTAACCATGAGTTATACAAGCCTAACCTGTGGGCCAAACACCCTTTAACCCATTATATAATATTGACTTATGTACCTTCTGAGATTAAAAAAATTCCTAGCCTGGAGTGAACAAATCAACTTACCAGACACAAGGCACTTATTCACCTTGAGTCAGGCTTCAAGCCTATCTCGAGAGCCTAACACCCTCTAATAACTACGTTTTGTTAAAGTCCGGGCTTTTTTCAACTAGATCGATAATTAGAAATTCCAAGATGAATATCTTACAAGCAGTGCAAGGAAATCCACCAAATAATGCCACGGGCCGAGTAGGAGCAGTAGGACAAATCCACTTAATCTGCAACCGAATTTGTAATATACTTTGTTAGTTGATCATATTAAACAACACCTAAAACTTTATCGATCAAGTTTACTACAAGTTTACATGCTGGAACATAGTGGAACTAGATTGAGATTTCCTTTGGAAAGAAAGGTATAGGTTCATGTACAAGTAGCCTTACGTTGGGTAGAGGAAGAGTTTCCAAGATCTGAGACCAACTGAAAAGATTAAAAATAATTCAATAATAAATTAGATGTCCTCATTACGCCATAACTTCCATCATTCCAACTAAATACAAATGCTTATGCCGATGGGCTTTCTAAAATTCAATAACAACAATTCTGAAAGGATTTGTCAAGTTTGCAGATTACGATGAAAGAATATCGAAAACAACCTCCAAATAGATTCAAAAACATTTGAAACTGGGACCACACTCTTGTTGGTTACCCAATAATGAAGAAACCAGCCCTCCTTTCATGATGTGAATGTTTGATATTGGTTAGGCTCATAAATTATAATAATAATCATTATTTTATGTTGAATTTTGGTTTTTCTAATTCTTAAGGACAGAAAACATGATGTGGTCCCCATTCATCAATTTGTCATATAGAGGCAACACCTCAATATAGCTTAGAATCAAAGATATGACATAAAAATGCCAACTAGCAATATTTTTTTAAGCAATGTACCATTACCTTCCCCCATAAAAAAAACCAGAATAAGAATCTCTAGTAAAGGCATATAGAATTTGTCAAACTTTCTATATATGAACATACACAAGAAGAAAGGACAAGACACTGACATTCTCTCACTCGGCCACTTCTTTCCTTTTGGCATGGAAGACAAAAAGAAAGTCTTCTACTGAGATATAATCCACGAATTAGAATGGAAAGTTTGAAACTTGCATGTAATGTACCATAGAGTTCAAAGTGAGTGTTTCATACTAAATCAGTACCCCATAATTTCTTCTTAACCTCATTCAAAGTAAGTCAACCAAAAATTAGCAAAATAACTCTAATAAGCCGGCCAAACAGGGAGGAGAACATAAAGAAGACAAGTCATTAGTACCTTGATCCCTTATCACCTAGGCCATGTAACCAAACAATAGTTGCCTGATGCTTCCCTTTAGGCCTGACCACATGGGTCCTCCCAAACTCGAAGGTCATCCTGCCAGTTCTACTACCTGACATAATGGAGCAAAAAGTTGAGGGGGGAAAACCCCAGATGCATAAATGAAAGCTAAACCATATATTCTTAAGGACGGTAAACCAATAAAACAAAATGAACAGAAAATGAACAAACCAGAGCCCACAGTAGAGCTGTTATAGCTCATTGTTTTTCCACAAAAAAATGTTGGAAGCAAAGCAACACGGGCCACAAGTTAGGCGTTGGAATTAGTTCCTGCAATGAAGAGTTTTAGAATTGACCAACTGTATTTATATGCATTTGGGAAGGGAGAAATGGAACTAAAACCCATCGATTTTACATTAGCTACTCCTGTAACGCAGTCCTAAAATACTAAAAAAAAAAGTGAAAGGGCATCTCAAAAAAGGAGAGATAAAAGGGTGGGTGGGGGAAGAAAAAGGCAAGAGCTCTTTATGGGCAAAAAAGAATCCACAAGAGATTAAAGCATCGATACAGAAAACGAAGGAGCTGAGCTGACACAGCTCTTCAGTTTATAAATGCCACAGAGGGAGCAACAAAAAGAGAGATTGCGAGGGCAAGAGAGCGAGAGGAAAAGAATCTATGCCCTTGAATGCAGGACAAGCCACAAGGGTAAAGCATTTCAACTACAGCAACACAAGAATATAGCAACTAATGAAAATTTTCAACCAAAAGGACAAAAAACAGAGAAAAAAGAAAAGGGTATACAAATACAGTACAACACAATACAGTACATAAAGAATGAAAAGACACCCATCAAATTACAGACCCAAAAGTTGAATGTTCAGCCAAGCATTGATGAAGAGAAGAATTAGTAGGAAAGATCTGGAATACAATGGATTTGTTTAAGTTTTATTTCAAAATATGAATGTGAAGAAGAGAAAGTGAAGAGGGTTTTAAGGTATTTTATATACCAATTTAGGGGTGCAAGTGTTTAACAAACAAAAAGCATAAGTGCTTTTTCTAGTTTCACTCTTTTTTGTAAAAAGCTATTTCCTTTCGTCTTCCCTTCACACTGCTTTCTCTTCCTTGTTCTTCTTCTTCTTTCTATCTTTTCTTTTTTCTCTCTTTACTTTTCTTTTTCTGATGTTTTGTTCATATTTACTTCAAATGGCCGAAGGAACCAATGTGGCCCAGAAAGTCCAGAAACAACGGCTACTCTCTTACAATGGGTTCCCTCAGTAATTACTCATTCGCACTCCCTCCATTTTCACTCTACCATTTTACTTGACTTGGTTTTTAGTGTGGGGC

mRNA sequence

ATGAGATGCAGTATCCATGTAGCTATGATCTATCTATCAGGATTGCTTTGGATTTTAGGCCTTAATCTTTTCATGAATGCAATACCAAAGAAACATTTGGAGAAGCTTTTCAGGTGGGTGAGCCTAATCCTAAGCCATTGGTTGACACAGAAGAACATTACAGAAAGACACAGGAACCAATGTGGCCCAGAAAGTCCAGAAACAACGGCTACTCTCTTACAATGGGTTCCCTCAGTAATTACTCATTCGCACTCCCTCCATTTTCACTCTACCATTTTACTTGACTTGGTTTTTAGTGTGGGGC

Coding sequence (CDS)

ATGAGATGCAGTATCCATGTAGCTATGATCTATCTATCAGGATTGCTTTGGATTTTAGGCCTTAATCTTTTCATGAATGCAATACCAAAGAAACATTTGGAGAAGCTTTTCAGGTGGGTGAGCCTAATCCTAAGCCATTGGTTGACACAGAAGAACATTACAGAAAGACACAGGAACCAATGTGGCCCAGAAAGTCCAGAAACAACGGCTACTCTCTTACAATGGGTTCCCTCAGTAATTACTCATTCGCACTCCCTCCATTTTCACTCTACCATTTTACTTGACTTGGTTTTTAGTGTGGGGC

Protein sequence

MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQCGPESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVGX
Homology
[Close]
BLAST of CsaV3_2G031880.1 vs. NCBI nr
Match: XP_011649816.1 (PREDICTED: uncharacterized protein LOC105434665 isoform X1 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQ 60
           MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQ
Sbjct: 1   MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQ 60

Query: 61  CGPESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVG 102
           CGPESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVG
Sbjct: 61  CGPESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVG 101

[Close]
BLAST of CsaV3_2G031880.1 vs. NCBI nr
Match: XP_011649817.1 (PREDICTED: uncharacterized protein LOC105434665 isoform X2 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 4.9e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 4   SIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQCGP 63
           SIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQCGP
Sbjct: 2   SIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQCGP 61

Query: 64  ESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVG 102
           ESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVG
Sbjct: 62  ESPETTATLLQWVPSVITHSHSLHFHSTILLDLVFSVG 99

[Close]
BLAST of CsaV3_2G031880.1 vs. NCBI nr
Match: KGN62924.1 (hypothetical protein Csa_2G380040 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQ 60
          MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHR Q
Sbjct: 1  MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRLQ 60

[Close]
BLAST of CsaV3_2G031880.1 vs. TrEMBL
Match: tr|A0A0A0LPI2|A0A0A0LPI2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380040 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRNQ 60
          MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHR Q
Sbjct: 1  MRCSIHVAMIYLSGLLWILGLNLFMNAIPKKHLEKLFRWVSLILSHWLTQKNITERHRLQ 60

The following BLAST results are available for this feature:
BLAST of CsaV3_2G031880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649816.13.1e-51100.00PREDICTED: uncharacterized protein LOC105434665 isoform X1 [Cucumis sativus][more]
XP_011649817.14.9e-49100.00PREDICTED: uncharacterized protein LOC105434665 isoform X2 [Cucumis sativus][more]
KGN62924.14.9e-2598.33hypothetical protein Csa_2G380040 [Cucumis sativus][more]
BLAST of CsaV3_2G031880.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G031880.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G031880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPI2|A0A0A0LPI2_CUCSA3.3e-2598.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G380040 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G031880CsaV3_2G031880gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G031880.1CsaV3_2G031880.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G031880.1.cds4CsaV3_2G031880.1.cds4CDS
CsaV3_2G031880.1.cds3CsaV3_2G031880.1.cds3CDS
CsaV3_2G031880.1.cds2CsaV3_2G031880.1.cds2CDS
CsaV3_2G031880.1.cds1CsaV3_2G031880.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G031880.1.exon4CsaV3_2G031880.1.exon4exon
CsaV3_2G031880.1.exon3CsaV3_2G031880.1.exon3exon
CsaV3_2G031880.1.exon2CsaV3_2G031880.1.exon2exon
CsaV3_2G031880.1.exon1CsaV3_2G031880.1.exon1exon