CsaV3_2G030940.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G030940.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
Locationchr2 : 20354259 .. 20354822 (+)
Sequence length429
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACAACAAATCCTTGAACCTTGTGACACAGGTGCCCGATTGCATTCACTTGATTTACATGGTCGACACGACAGTGATTGGGTTAACTATTTGGCTCCTCAAATTTTACTTTGGGAAGATCGAAATAACTTTATTGCAAGTGTGCCTCAAATCAAGGATGACATATATAGATGTTGCGCCTGTATACATGCAATGGTACACCAATATTAGTCGGCGATACATCACAAAGGCAAGAGCATCATACCATTTTTTGGTAAGGGTTTATTATTTAATTGAATCAATTAAAAATTGTTTAGTTGCATAGTCTAATTGTAATTGTATGGACTGTAGGAAAGGTTTGCACAGTTGGAAATATCTAGTATATCATCAAATGCAGTGGCTAGAACGGTAAAACTTGCTTTGCGTAATTTGACATCCATATATAGACTAAGATATTTTGAATGCGACGTTTCTGATGAAAAACAAGGTGATCCAGCTAGACATGAGGATTTTCCCTCTCAACTTGATTTTCAAAATCAGTATGCAACATTCCGATTGATCATTTCACCAATACTCCCATGA

mRNA sequence

ATGATACAACAAATCCTTGAACCTTGTGACACAGGTGCCCGATTGCATTCACTTGATTTACATGGTCGACACGACAGTGATTGGGTTAACTATTTGGCTCCTCAAATTTTACTTTGGGAAGATCGAAATAACTTTATTGCAAGTGTGCCTCAAATCAAGGATGACATATATAGATGTTGCGCCTGTATACATGCAATGGAAAGGTTTGCACAGTTGGAAATATCTAGTATATCATCAAATGCAGTGGCTAGAACGGTAAAACTTGCTTTGCGTAATTTGACATCCATATATAGACTAAGATATTTTGAATGCGACGTTTCTGATGAAAAACAAGGTGATCCAGCTAGACATGAGGATTTTCCCTCTCAACTTGATTTTCAAAATCAGTATGCAACATTCCGATTGATCATTTCACCAATACTCCCATGA

Coding sequence (CDS)

ATGATACAACAAATCCTTGAACCTTGTGACACAGGTGCCCGATTGCATTCACTTGATTTACATGGTCGACACGACAGTGATTGGGTTAACTATTTGGCTCCTCAAATTTTACTTTGGGAAGATCGAAATAACTTTATTGCAAGTGTGCCTCAAATCAAGGATGACATATATAGATGTTGCGCCTGTATACATGCAATGGAAAGGTTTGCACAGTTGGAAATATCTAGTATATCATCAAATGCAGTGGCTAGAACGGTAAAACTTGCTTTGCGTAATTTGACATCCATATATAGACTAAGATATTTTGAATGCGACGTTTCTGATGAAAAACAAGGTGATCCAGCTAGACATGAGGATTTTCCCTCTCAACTTGATTTTCAAAATCAGTATGCAACATTCCGATTGATCATTTCACCAATACTCCCATGA

Protein sequence

MIQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDDIYRCCACIHAMERFAQLEISSISSNAVARTVKLALRNLTSIYRLRYFECDVSDEKQGDPARHEDFPSQLDFQNQYATFRLIISPILP
Homology
[Close]
BLAST of CsaV3_2G030940.1 vs. NCBI nr
Match: XP_022159786.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia] >XP_022159787.1 serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 42/129 (32.56%), Postives = 61/129 (47.29%), Query Frame = 0 

Query: 2   IQQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIASVPQIKDD-----I 61
           +Q I   C+T  +LH+ DL GRH+  WV++LAPQI  WE+R+N I     I  D      
Sbjct: 55  MQHIPAQCNTDMQLHTYDLRGRHERSWVSHLAPQITEWENRHNVIIQGQHINRDEDVEPR 114

Query: 62  YRCCACIHAMERFAQLEISSISSNAVARTVKL---ALRNLTSIYRLRYFECDVSDEKQGD 121
           Y C           +   S    N +     L   +L+NLT+ YR+R+ +     EK   
Sbjct: 115 YYCWYYSITRRYITRAGASYNYLNNLPNMTDLGRRSLQNLTNAYRVRHLDGPERREK--- 174

Query: 122 PARHEDFPS 123
             RH+  P+
Sbjct: 175 --RHQRGPN 178

[Close]
BLAST of CsaV3_2G030940.1 vs. NCBI nr
Match: XP_008460604.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460605.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460606.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460608.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_016902570.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 8.0e-05
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 3   QQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIAS 49
           Q+I +PCDTG +LH +D  G+H  DW  Y    I LWE R N IA+
Sbjct: 519 QEIPQPCDTGTKLHMIDRRGKHHYDWKAYHGQYIKLWEARENSIAT 564

[Close]
BLAST of CsaV3_2G030940.1 vs. TrEMBL
Match: tr|A0A1S3CE15|A0A1S3CE15_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103499383 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-05
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 3   QQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIAS 49
           Q+I +PCDTG +LH +D  G+H  DW  Y    I LWE R N IA+
Sbjct: 519 QEIPQPCDTGTKLHMIDRRGKHHYDWKAYHGQYIKLWEARENSIAT 564

[Close]
BLAST of CsaV3_2G030940.1 vs. TrEMBL
Match: tr|A0A0A0KPN9|A0A0A0KPN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G074680 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.9e-04
Identity = 21/46 (45.65%), Postives = 28/46 (60.87%), Query Frame = 0 

Query: 3   QQILEPCDTGARLHSLDLHGRHDSDWVNYLAPQILLWEDRNNFIAS 49
           Q+I +PCDT  +LH++D  G+H  DW  Y    I LWE R   IA+
Sbjct: 307 QEIPQPCDTETKLHTIDRRGKHHYDWKAYHGQYIKLWEGREKSIAT 352

The following BLAST results are available for this feature:
BLAST of CsaV3_2G030940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159786.12.5e-0632.56serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia] >... [more]
XP_008460604.18.0e-0550.00PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
BLAST of CsaV3_2G030940.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030940.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G030940.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CE15|A0A1S3CE15_CUCME5.3e-0550.00serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A0A0KPN9|A0A0A0KPN9_CUCSA9.9e-0445.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G074680 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G030940CsaV3_2G030940gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G030940.1.exon1CsaV3_2G030940.1.exon1exon
CsaV3_2G030940.1.exon2CsaV3_2G030940.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G030940.1.cds1CsaV3_2G030940.1.cds1CDS
CsaV3_2G030940.1.cds2CsaV3_2G030940.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G030940.1CsaV3_2G030940.1-proteinpolypeptide