CsaV3_2G019480.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G019480.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein
Locationchr2 : 15490865 .. 15491185 (+)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACGTCGAGGAGGAAAACGGAGAAGATAAGTTAAATGGTGTTGCTAGTTCGAGTGGATTTTTCGGCAAATTGGAACACAAGTACAGAGAAATCAAAGAGAATGCAGAAAAGTATCCTTATGTGTGGGGATCATACATTGTCGTCTATGGCGGAATTTTTCTTTGGGCTGGGTATAGATGGAGAAAGCTTCGGAAGACGGAGGACAGAGTACGCATTTTACAAGAGAAGCTTCGAAAACATTATGAAGCACAAGAATCATCTATCAAACAATCAGCAAATTCAGTTGATAAAACTTCAACTCCTTCCAAGCAGTAG

mRNA sequence

ATGGTGGACGTCGAGGAGGAAAACGGAGAAGATAAGTTAAATGGTGTTGCTAGTTCGAGTGGATTTTTCGGCAAATTGGAACACAAGTACAGAGAAATCAAAGAGAATGCAGAAAAGTATCCTTATGTGTGGGGATCATACATTGTCGTCTATGGCGGAATTTTTCTTTGGGCTGGGTATAGATGGAGAAAGCTTCGGAAGACGGAGGACAGAGTACGCATTTTACAAGAGAAGCTTCGAAAACATTATGAAGCACAAGAATCATCTATCAAACAATCAGCAAATTCAGTTGATAAAACTTCAACTCCTTCCAAGCAGTAG

Coding sequence (CDS)

ATGGTGGACGTCGAGGAGGAAAACGGAGAAGATAAGTTAAATGGTGTTGCTAGTTCGAGTGGATTTTTCGGCAAATTGGAACACAAGTACAGAGAAATCAAAGAGAATGCAGAAAAGTATCCTTATGTGTGGGGATCATACATTGTCGTCTATGGCGGAATTTTTCTTTGGGCTGGGTATAGATGGAGAAAGCTTCGGAAGACGGAGGACAGAGTACGCATTTTACAAGAGAAGCTTCGAAAACATTATGAAGCACAAGAATCATCTATCAAACAATCAGCAAATTCAGTTGATAAAACTTCAACTCCTTCCAAGCAGTAG

Protein sequence

MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ
Homology
[Close]
BLAST of CsaV3_2G019480.1 vs. NCBI nr
Match: XP_004147347.1 (PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 3.8e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGY 60
           MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGY
Sbjct: 1   MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGY 60

Query: 61  RWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 107
           RWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ
Sbjct: 61  RWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 106

[Close]
BLAST of CsaV3_2G019480.1 vs. NCBI nr
Match: XP_008460875.1 (PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo] >XP_008460876.1 PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo] >XP_008460877.1 PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 93/106 (87.74%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGY 60
           MVD+EEE G DKLNGV+SSS F GKL HKYREIKENAEKYPYVWGSYI+VYGG+FLWAGY
Sbjct: 1   MVDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGY 60

Query: 61  RWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 107
           RWRKLRKTEDRVRILQEKLR+HYEA++SSIKQSANSVDK STPSKQ
Sbjct: 61  RWRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ 106

[Close]
BLAST of CsaV3_2G019480.1 vs. NCBI nr
Match: XP_023007268.1 (uncharacterized protein LOC111499806 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 5.3e-30
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 0 

Query: 6   EENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKL 65
           ++  ED L   ASSSGF GKLE KY+E+KENAE YPYVWGSYIVVYGG  LW GYRWRKL
Sbjct: 4   QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63

Query: 66  RKTEDRVRILQEKLRKHYEAQESSIKQSAN---SVDKTSTPSKQ 107
           RKTEDRVR+LQEKLR+ YEA++S+ KQSAN   SV+K S   KQ
Sbjct: 64  RKTEDRVRVLQEKLRQRYEAEQSA-KQSANSVASVEKVSQSVKQ 106

[Close]
BLAST of CsaV3_2G019480.1 vs. NCBI nr
Match: XP_022948157.1 (uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948158.1 uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948159.1 uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_023534704.1 uncharacterized protein LOC111796195 [Cucurbita pepo subsp. pepo] >XP_023534706.1 uncharacterized protein LOC111796195 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 6   EENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKL 65
           ++  ED L   ASSSGF GKLE KY+E+KENAE YPYVWGSYIVVYGG  LW GYRWRKL
Sbjct: 4   QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63

Query: 66  RKTEDRVRILQEKLRKHYEAQESSIKQSAN---SVDKTSTPSKQ 107
           RKTEDRVR LQEKLR+ YEA++S+ KQSAN   SV+K S   KQ
Sbjct: 64  RKTEDRVRALQEKLRQRYEAEQSA-KQSANSVASVEKVSQSVKQ 106

[Close]
BLAST of CsaV3_2G019480.1 vs. NCBI nr
Match: XP_022148881.1 (uncharacterized protein LOC111017444 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 6.5e-28
Identity = 68/97 (70.10%), Postives = 76/97 (78.35%), Query Frame = 0 

Query: 10  EDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKLRKTE 69
           ED++   A+SSGF GKLE KYREIKENAE YPYVWGSYIVVYGG  LW GYRWRKLRKTE
Sbjct: 8   EDEVTTPATSSGFMGKLEQKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKTE 67

Query: 70  DRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 107
           DRVR LQEKLR+ YEA++S+   S  SV+K     KQ
Sbjct: 68  DRVRXLQEKLRRRYEAEQSA--SSVASVEKDPPSVKQ 102

[Close]
BLAST of CsaV3_2G019480.1 vs. TAIR10
Match: AT5G09270.1 (unknown protein)

HSP 1 Score: 106.7 bits (265), Expect = 9.1e-24
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 0 

Query: 21  GFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKLRKTEDRVRILQEKLR 80
           GF G +E +Y++++++AE YPYVWGSY VVYGG+FLW  YRWRKLR+TEDRVR LQ KLR
Sbjct: 21  GFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRTEDRVRGLQTKLR 80

Query: 81  KHYEAQESSI--KQSANSVDKTST-PSKQ 107
           K  E +++++   +SA SVDK+S+ P K+
Sbjct: 81  KLVENEQAAVTASKSAQSVDKSSSIPDKK 109

[Close]
BLAST of CsaV3_2G019480.1 vs. TrEMBL
Match: tr|A0A1S3CCY7|A0A1S3CCY7_CUCME (uncharacterized protein LOC103499620 OS=Cucumis melo OX=3656 GN=LOC103499620 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 93/106 (87.74%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MVDVEEENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGY 60
           MVD+EEE G DKLNGV+SSS F GKL HKYREIKENAEKYPYVWGSYI+VYGG+FLWAGY
Sbjct: 1   MVDIEEEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGY 60

Query: 61  RWRKLRKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 107
           RWRKLRKTEDRVRILQEKLR+HYEA++SSIKQSANSVDK STPSKQ
Sbjct: 61  RWRKLRKTEDRVRILQEKLRQHYEAEQSSIKQSANSVDKNSTPSKQ 106

[Close]
BLAST of CsaV3_2G019480.1 vs. TrEMBL
Match: tr|M5X726|M5X726_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019061mg PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-23
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 0 

Query: 6  EENGEDK--LNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWR 65
          EE GE+K       +++G  G +  KYR+IKE+AE YPYVWGSYIVVYGG+ LW  YRWR
Sbjct: 4  EEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWR 63

Query: 66 KLRKTEDRVRILQEKLRKHYEAQESS 90
          KLRKTEDRVR LQ++LRKHY A+E+S
Sbjct: 64 KLRKTEDRVRALQDRLRKHYAAEEAS 89

[Close]
BLAST of CsaV3_2G019480.1 vs. TrEMBL
Match: tr|A0A251Q4T5|A0A251Q4T5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G241300 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-23
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 0 

Query: 6  EENGEDK--LNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWR 65
          EE GE+K       +++G  G +  KYR+IKE+AE YPYVWGSYIVVYGG+ LW  YRWR
Sbjct: 4  EEQGEEKQQTTSTQAAAGLGGAVVEKYRQIKEHAETYPYVWGSYIVVYGGLALWTAYRWR 63

Query: 66 KLRKTEDRVRILQEKLRKHYEAQESS 90
          KLRKTEDRVR LQ++LRKHY A+E+S
Sbjct: 64 KLRKTEDRVRALQDRLRKHYAAEEAS 89

[Close]
BLAST of CsaV3_2G019480.1 vs. TrEMBL
Match: tr|A0A2P6S3C1|A0A2P6S3C1_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0163441 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-22
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 0 

Query: 6   EENGEDKLNGVASSS-GFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRK 65
           +E GE+     +S + GF G +E KYR+IKE+AE YPYVW SY VVYGG+ LW  YRWRK
Sbjct: 48  QETGEENQQTASSQAVGFIGAVEAKYRQIKEHAETYPYVWASYSVVYGGLALWTTYRWRK 107

Query: 66  LRKTEDRVRILQEKLRKHYEAQE--------SSIKQSANSVDKTSTPS 105
           LRKTEDRVR LQE+LRKHY A+E        S+ +  A  V K   PS
Sbjct: 108 LRKTEDRVRALQERLRKHYAAEERASATVSSSTSRSPATPVQKVPPPS 155

[Close]
BLAST of CsaV3_2G019480.1 vs. TrEMBL
Match: tr|A0A1S3E5T5|A0A1S3E5T5_CICAR (uncharacterized protein LOC101509617 OS=Cicer arietinum OX=3827 GN=LOC101509617 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.9e-22
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 0 

Query: 6   EENGEDKLNGVASSSGFFGKLEHKYREIKENAEKYPYVWGSYIVVYGGIFLWAGYRWRKL 65
           ++ GED++    S++GF   LE++Y++IKE+AE YPYVW SYIVVYGG  LW  YRWRKL
Sbjct: 19  QKTGEDQVVSGPSAAGFIDSLENRYQKIKEHAETYPYVWASYIVVYGGFGLWTTYRWRKL 78

Query: 66  RKTEDRVRILQEKLRKHYEAQESSIKQSANSVDKTSTPSKQ 107
           RKTE+RVR LQEKLRK  EA+ES    SA  V+K S  S++
Sbjct: 79  RKTENRVRSLQEKLRKLIEAEESG--NSAKVVEKGSASSEK 117

The following BLAST results are available for this feature:
BLAST of CsaV3_2G019480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147347.13.8e-52100.00PREDICTED: uncharacterized protein LOC101213780 [Cucumis sativus][more]
XP_008460875.11.5e-4587.74PREDICTED: uncharacterized protein LOC103499620 [Cucumis melo] >XP_008460876.1 P... [more]
XP_023007268.15.3e-3070.19uncharacterized protein LOC111499806 [Cucurbita maxima][more]
XP_022948157.11.6e-2970.19uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948158.1 unchar... [more]
XP_022148881.16.5e-2870.10uncharacterized protein LOC111017444 [Momordica charantia][more]
BLAST of CsaV3_2G019480.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G09270.19.1e-2458.43unknown protein[more]
BLAST of CsaV3_2G019480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G019480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CCY7|A0A1S3CCY7_CUCME1.0e-4587.74uncharacterized protein LOC103499620 OS=Cucumis melo OX=3656 GN=LOC103499620 PE=... [more]
tr|M5X726|M5X726_PRUPE7.1e-2363.95Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa019061m... [more]
tr|A0A251Q4T5|A0A251Q4T5_PRUPE7.1e-2363.95Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G241300 PE=4 SV=1[more]
tr|A0A2P6S3C1|A0A2P6S3C1_ROSCH4.6e-2255.56Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0163441 PE=4... [more]
tr|A0A1S3E5T5|A0A1S3E5T5_CICAR7.9e-2258.42uncharacterized protein LOC101509617 OS=Cicer arietinum OX=3827 GN=LOC101509617 ... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G019480CsaV3_2G019480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G019480.1.exon1CsaV3_2G019480.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G019480.1.cds1CsaV3_2G019480.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G019480.1CsaV3_2G019480.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..106
NoneNo IPR availablePANTHERPTHR36794FAMILY NOT NAMEDcoord: 9..103