CsaV3_2G014100.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G014100.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 11734304 .. 11734764 (+)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGAGTTTTGGCTTGAATGGAGGCTAGATTTGAGGTCTTGGAAGAATTTAGCTACTGTTTAACCAATAAATGAATAAACTTTTGGGTATTCTCCACGAATTTAGACCAAATTACTGTGGAAAAGCG

mRNA sequence

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

Coding sequence (CDS)

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

Protein sequence

MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQSNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Homology
[Close]
BLAST of CsaV3_2G014100.1 vs. NCBI nr
Match: KGN61727.1 (hypothetical protein Csa_2G234540 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60
           MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ
Sbjct: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60

Query: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 113
           SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Sbjct: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 112

[Close]
BLAST of CsaV3_2G014100.1 vs. TrEMBL
Match: tr|A0A0A0LLT2|A0A0A0LLT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234540 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60
           MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ
Sbjct: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60

Query: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 113
           SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Sbjct: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 112

The following BLAST results are available for this feature:
BLAST of CsaV3_2G014100.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61727.13.5e-56100.00hypothetical protein Csa_2G234540 [Cucumis sativus][more]
BLAST of CsaV3_2G014100.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014100.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G014100.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LLT2|A0A0A0LLT2_CUCSA2.3e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G014100CsaV3_2G014100gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G014100.1.exon1CsaV3_2G014100.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G014100.1.cds1CsaV3_2G014100.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G014100.1CsaV3_2G014100.1-proteinpolypeptide