CsaV3_2G010000.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G010000.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	S locus-related glycoprotein 1 binding pollen coat
Location	chr2 : 6639862 .. 6640542 (-)
Sequence length	240

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAGAAGTATATCAAAAATTAAAAACATGAAGTCTGTCTCCTTCTCAGCCATTCTTCTTGCACTTTTACTCGTTTTCAGTGGTACTCCCCTCTTTAGCTTGTATTATTTGTTTTAATTTCATCATCACATGCTCGCCTTCTCTTTTGATTAATTTCTTTTCGCCAGTTTTGTTTAATTTTTTTAAGAATTCTACCCGATGTAAGTAAGTGATATTGTACGTAGTAGTTTCAAGTTGTGTTAATTTACCACAAAGAAAACAAGAAGATTCAAATACTTCATAGAGTTTATGGTTTGTTTACAAGATTATTGAGGTTGGGTTTATGGATTTTGAATGAATGCAGGGGAAACTATCATGATGAGAAGTGTTGAAGGTGAAGGGCTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGCCGAGTGTGCGAGTGGGTGCAAACACGTATTTGGAGCAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGATCTTTACAGCTTCTTACTATCGAAATAAAATGGAATAATTAAGGGTTTGTTACTTACTCCTTAACTTGTTTGGCATCACTTCAACGATGATAAAGTAGTTATCAACTAAAATTAATGAGTAATGGTATTTCATTAGATACATTATAAATCCAC

mRNA sequence

ATGAAGTCTGTCTCCTTCTCAGCCATTCTTCTTGCACTTTTACTCGTTTTCAGTGGGGAAACTATCATGATGAGAAGTGTTGAAGGTGAAGGGCTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGCCGAGTGTGCGAGTGGGTGCAAACACGTATTTGGAGCAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGA

Coding sequence (CDS)

ATGAAGTCTGTCTCCTTCTCAGCCATTCTTCTTGCACTTTTACTCGTTTTCAGTGGGGAAACTATCATGATGAGAAGTGTTGAAGGTGAAGGGCTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGCCGAGTGTGCGAGTGGGTGCAAACACGTATTTGGAGCAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGA

Protein sequence

MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAMGLCFFFRTPSDTCLCRYPC

Homology

[Close]

BLAST of CsaV3_2G010000.1 vs. NCBI nr
Match: KGN61300.1 (hypothetical protein Csa_2G077550 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 4.0e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CsaV3_2G010000.1 vs. NCBI nr
Match: XP_023520479.1 (beta-galactosidase 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 23  MMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAMGLCFFFRTPSDTCLCRYPC 80
           +MRSV+G       LHGGGCKDAEC SGCK  F   A+GLCFF R PSDTC C +PC
Sbjct: 496 IMRSVDGH---RAVLHGGGCKDAECDSGCKAEFNEKAIGLCFFIRAPSDTCACIFPC 549

[Close]

BLAST of CsaV3_2G010000.1 vs. NCBI nr
Match: EOY05191.1 (Uncharacterized protein TCM_020264 [Theobroma cacao])

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKS+ FSAI L +L + +G   MM +  G   C+   HGGGC   EC + C+  +G  A 
Sbjct: 1  MKSLPFSAIFLLVLFITAGNESMMANAIGS--CDVLGHGGGCAIDECFNSCRMKYGQDAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+  +TP+DTC+CR+PC
Sbjct: 61 GFCYAIKTPNDTCMCRHPC 77

[Close]

BLAST of CsaV3_2G010000.1 vs. NCBI nr
Match: EOY05192.1 (Uncharacterized protein TCM_020265 [Theobroma cacao])

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKS+SFSAI+L +L + +G    M +  G   C+   HGGGC   EC + C+  +G  A 
Sbjct: 1  MKSLSFSAIVLLVLFLSAGNESRMANAIGS--CDVLGHGGGCAIDECFNSCRMKYGQDAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+    P+DTC+CR+PC
Sbjct: 61 GFCYTINAPNDTCICRHPC 77

[Close]

BLAST of CsaV3_2G010000.1 vs. NCBI nr
Match: KHG05522.1 (Defensin-like protein [Gossypium arboreum])

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MK++SFSAILL LL + +G  + + +  G   C    H GGC+  EC + C+   G  A 
Sbjct: 1  MKTLSFSAILLVLLFISAGTELKVANAIGS--CVVFGHSGGCEINECFNACRAKLGQDAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+  +TP+DTC+CR+PC
Sbjct: 61 GFCYTIKTPNDTCMCRHPC 77

[Close]

BLAST of CsaV3_2G010000.1 vs. TrEMBL
Match: tr|A0A0A0LH75|A0A0A0LH75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CsaV3_2G010000.1 vs. TrEMBL
Match: tr|A0A061EK36|A0A061EK36_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_020264 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.7e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKS+ FSAI L +L + +G   MM +  G   C+   HGGGC   EC + C+  +G  A 
Sbjct: 1  MKSLPFSAIFLLVLFITAGNESMMANAIGS--CDVLGHGGGCAIDECFNSCRMKYGQDAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+  +TP+DTC+CR+PC
Sbjct: 61 GFCYAIKTPNDTCMCRHPC 77

[Close]

BLAST of CsaV3_2G010000.1 vs. TrEMBL
Match: tr|A0A061ELG6|A0A061ELG6_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_020265 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-10
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKS+SFSAI+L +L + +G    M +  G   C+   HGGGC   EC + C+  +G  A 
Sbjct: 1  MKSLSFSAIVLLVLFLSAGNESRMANAIGS--CDVLGHGGGCAIDECFNSCRMKYGQDAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+    P+DTC+CR+PC
Sbjct: 61 GFCYTINAPNDTCICRHPC 77

[Close]

BLAST of CsaV3_2G010000.1 vs. TrEMBL
Match: tr|A0A0B0MYS8|A0A0B0MYS8_GOSAR (Defensin-like protein OS=Gossypium arboreum OX=29729 GN=F383_30904 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-10
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MK++SFSAILL LL + +G  + + +  G   C    H GGC+  EC + C+   G  A 
Sbjct: 1  MKTLSFSAILLVLLFISAGTELKVANAIGS--CVVFGHSGGCEINECFNACRAKLGQDAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+  +TP+DTC+CR+PC
Sbjct: 61 GFCYTIKTPNDTCMCRHPC 77

[Close]

BLAST of CsaV3_2G010000.1 vs. TrEMBL
Match: tr|A0A1R3J168|A0A1R3J168_9ROSI (S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=93759 GN=COLO4_20198 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MK++SFSAI L +L + +G   M  +V   G C    HGGGC+  EC + C+   G  A 
Sbjct: 1  MKTLSFSAIFLLVLFISAGNESM--TVNAIGSCTVVGHGGGCEINECFNSCRAKHGQTAH 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          G C+   T  DTC+CRYPC
Sbjct: 61 GFCYTITTIDDTCVCRYPC 77

The following BLAST results are available for this feature:

BLAST of CsaV3_2G010000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61300.1	4.0e-38	100.00	hypothetical protein Csa_2G077550 [Cucumis sativus]	[more]
XP_023520479.1	3.8e-12	63.16	beta-galactosidase 7-like [Cucurbita pepo subsp. pepo]	[more]
EOY05191.1	7.1e-11	44.30	Uncharacterized protein TCM_020264 [Theobroma cacao]	[more]
EOY05192.1	7.8e-10	43.04	Uncharacterized protein TCM_020265 [Theobroma cacao]	[more]
KHG05522.1	7.8e-10	43.04	Defensin-like protein [Gossypium arboreum]	[more]

BLAST of CsaV3_2G010000.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G010000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LH75\|A0A0A0LH75_CUCSA	2.6e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=4 SV=1	[more]
tr\|A0A061EK36\|A0A061EK36_THECC	4.7e-11	44.30	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_020264 PE=4 SV=1	[more]
tr\|A0A061ELG6\|A0A061ELG6_THECC	5.2e-10	43.04	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_020265 PE=4 SV=1	[more]
tr\|A0A0B0MYS8\|A0A0B0MYS8_GOSAR	5.2e-10	43.04	Defensin-like protein OS=Gossypium arboreum OX=29729 GN=F383_30904 PE=4 SV=1	[more]
tr\|A0A1R3J168\|A0A1R3J168_9ROSI	3.4e-09	44.30	S locus-related glycoprotein 1 binding pollen coat OS=Corchorus olitorius OX=937...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010851	SLR1_pollen-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G010000	CsaV3_2G010000	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G010000.1.cds2	CsaV3_2G010000.1.cds2	CDS
CsaV3_2G010000.1.cds1	CsaV3_2G010000.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G010000.1.exon2	CsaV3_2G010000.1.exon2	exon
CsaV3_2G010000.1.exon1	CsaV3_2G010000.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G010000.1	CsaV3_2G010000.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	S locus-related glycoprotein 1 binding pollen coat protein	PFAM	PF07333	SLR1-BP	coord: 31..79 e-value: 1.2E-7 score: 32.0