CsaV3_2G009680.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G009680.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Photosystem I reaction center subunit XI
Location	chr2 : 6171368 .. 6173516 (-)
Sequence length	654

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAACTATTATTTAAATAGAGATACGTAAGAATGTTTAACAAAGCTATGACCATGAATGGCGTGATAGTGGCCTAGAAGTTGAGACTCGAACACCACTACGTCGTTCAAAGCTCATTTCAAATTTGTATTTCAATCCAAAATTCTAATAAATTTCTACTCCAAGTAAGAAAGTTTAGAGATGCTTTTTTGATTTAGAAACAAAAAGAATGGTAAATAATTAAAAGAATCCACTTTAGAATTTACGAACCAACCCCAGTCCATTTACCAAATAGGGGGAGAGGGCCAAATCTAAATCTTTTCAAGTTCCAAATCCATATGGTTCATCTTAAGAGAGAAGAGATCCAAATCCAAATCTTTGAAGCTCACATGGGCTATAGCCCATTCTCATGAGATAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAAAGCCAAATCCAAATCTCTGATTTTCTCATGAGAGAGAAAGGAATGGATAAGGGATAAGGTTACGTGGCAAGTTCTATCCAATGAGAAGAGAAAGGTTTGATCAACCACAGCCTCCCACAAATTTCCATGGCCAGTGGCAACCAACAACAAGAACTTAAACTAACCCCCAAAACCAAATCTAAAAATCTCACCTCAATCTTCTTCTCTGCCACTGATCCTTCCACAAGCCAAAGGCAGCAGAAGCAAAAGCAGCAGCCATGGCCACTGCAACCTCTCCCATTGCCAGCCAGCTCAGTTCCAGCTTCGCTTCATCCAACACGAGAGCTTTGATCTCTCCTAAAGGCCTCTCCGCTTCGCCCCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCATCCAAGCTGATAAGGTAATATAAGCAATACCATTTCTCAATTTTACATCATCTCCCTCTCTGTGGAGCTTTTAAGATATATATATTATATACCGTGTAATGTAATACTATTTCAAGGGATATTAACTTCAATCTCAACGAATCAGAGTAATATAAACGTATTAGTTGTATAAAAATTTAAAGAGTATATTTGAGAGTGCTTTTAATGTAAGTGTGTGTGGGACTTAAGAGGAGAGTTAACCAGAAAAAATCTTTAAAATTTTATGTAAGGATATTAAGATGAAGAGAGTGAACATAAGTATGGCTCAAGGATAATTAGCATGTACACCTTCCATTATGGAGGATACCCAAATTGAAGAAGCCTGTAACGATTCGGTAGAGAAAAGATCCGTTAGTGAGAGAAAAATTGATGCAGAAAATGTATGTGAAGAGATTAATTAGATAAAAAAATAAAATGCAAATTGAATAAAAAAAACATGCCATGCAAAGATGTTAATGAGGTATTGAAACTGTTGCAGCCGACTTTCCAAGTGATTCAGCCGATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTATCTTTCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATAGAAGTGGGCCTGGCTCACGGTTTCTTTCTGGTTGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCAGGCTCGCTGGCTGCTGGGGGTCTCATTGTCATTTTGAGCGTCTGCTTGACAATGTATGGTGTTGCATCATTCAATGAAGGAGAGCCATCTACCGCACCATCATTGACTTTGACTGGCCGGAAGAAGACCCCTGATCCTCTCCAAACAGCCGATGGGTGGGCAAAATTCTCAGGCGGGTTTTTCTTCGGTGGTATCTCCGGTGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAGATTTTGTATCATTTTCTGTTTCTACAATGCAACTTCCATGTCTGTATTATGGAAACATAAAATTGTATATTTTCTGCCAAACCTCTTTGTTAGATCCTTTGTGATTGCATATCGATTTCCTTTTTGGAACTGTTATGTATGTACTCTACTTCCATTTGCTTCTTCACAAACAATAGCTTCTGTGCCACTGCATTAAAAACTGGTAGGAGGAGAATATCAACAATACGATGGTACTTTTTTCTTTTCTGTCATAAGAGAAATAACATATAGAAGTTATCGAGAAAAAAAAGATATCAAAA

mRNA sequence

ATGGCCACTGCAACCTCTCCCATTGCCAGCCAGCTCAGTTCCAGCTTCGCTTCATCCAACACGAGAGCTTTGATCTCTCCTAAAGGCCTCTCCGCTTCGCCCCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCATCCAAGCTGATAAGCCGACTTTCCAAGTGATTCAGCCGATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTATCTTTCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATAGAAGTGGGCCTGGCTCACGGTTTCTTTCTGGTTGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCAGGCTCGCTGGCTGCTGGGGGTCTCATTGTCATTTTGAGCGTCTGCTTGACAATGTATGGTGTTGCATCATTCAATGAAGGAGAGCCATCTACCGCACCATCATTGACTTTGACTGGCCGGAAGAAGACCCCTGATCCTCTCCAAACAGCCGATGGGTGGGCAAAATTCTCAGGCGGGTTTTTCTTCGGTGGTATCTCCGGTGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAG

Coding sequence (CDS)

ATGGCCACTGCAACCTCTCCCATTGCCAGCCAGCTCAGTTCCAGCTTCGCTTCATCCAACACGAGAGCTTTGATCTCTCCTAAAGGCCTCTCCGCTTCGCCCCTCCGACGCATCCCTACAAGAACACACTCCTTCACCATCAGAGCCATCCAAGCTGATAAGCCGACTTTCCAAGTGATTCAGCCGATCAATGGAGACCCATTCATTGGAAGCCTTGAGACTCCAGTAACCTCAAGCCCACTGATAGCATGGTATCTTTCAAACCTCCCAGCCTACAGAACAGCAGTCAGCCCATTGCTGAGGGGAATAGAAGTGGGCCTGGCTCACGGTTTCTTTCTGGTTGGTCCATTTGTCAAAGCTGGCCCTCTAAGGAACACAGCCTACGCCGGAGGAGCAGGCTCGCTGGCTGCTGGGGGTCTCATTGTCATTTTGAGCGTCTGCTTGACAATGTATGGTGTTGCATCATTCAATGAAGGAGAGCCATCTACCGCACCATCATTGACTTTGACTGGCCGGAAGAAGACCCCTGATCCTCTCCAAACAGCCGATGGGTGGGCAAAATTCTCAGGCGGGTTTTTCTTCGGTGGTATCTCCGGTGTGATCTGGGCATACTTCCTCCTCTATGTCTTGGACCTCCCTTACTACGTCAAGTAG

Protein sequence

MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK

Homology

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BLAST of CsaV3_2G009680.1 vs. NCBI nr
Match: NP_001267647.1 (photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus] >BAA11677.1 subunit of photosystem I [Cucumis sativus] >KGN61263.1 Photosystem I reaction center subunit XI [Cucumis sativus])

HSP 1 Score: 424.5 bits (1090), Expect = 2.2e-115
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CsaV3_2G009680.1 vs. NCBI nr
Match: XP_008441854.1 (PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 6.4e-115
Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CsaV3_2G009680.1 vs. NCBI nr
Match: Q39654.1 (RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI-L; AltName: Full=PSI subunit V; Flags: Precursor >BAA09047.1 PsaL [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 8.4e-115
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSP ASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

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BLAST of CsaV3_2G009680.1 vs. NCBI nr
Match: XP_022149833.1 (photosystem I reaction center subunit XI, chloroplastic [Momordica charantia])

HSP 1 Score: 414.1 bits (1063), Expect = 3.0e-112
Identity = 210/217 (96.77%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKK PD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKAPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

[Close]

BLAST of CsaV3_2G009680.1 vs. NCBI nr
Match: XP_022965497.1 (photosystem I reaction center subunit XI, chloroplastic [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 1.1e-111
Identity = 208/217 (95.85%), Postives = 214/217 (98.62%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSS+F SSNTRALI+PKGLSASPLRR+P RTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSAFTSSNTRALIAPKGLSASPLRRVPARTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPD LQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDQLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPY+VK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYFVK 217

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BLAST of CsaV3_2G009680.1 vs. TAIR10
Match: AT4G12800.1 (photosystem I subunit l)

HSP 1 Score: 341.3 bits (874), Expect = 4.5e-94
Identity = 172/219 (78.54%), Postives = 195/219 (89.04%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSN-TRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQ 60
           MA + SP+ASQL SSF+S++ ++ L  PKG+S +P    PT R  SFT+RA+++DK TFQ
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PD 
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

[Close]

BLAST of CsaV3_2G009680.1 vs. Swiss-Prot
Match: sp|Q39654|PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=3659 GN=PSAL PE=2 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 2.8e-117
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSP ASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPTASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CsaV3_2G009680.1 vs. Swiss-Prot
Match: sp|Q9SUI4|PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAL PE=1 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 8.1e-93
Identity = 172/219 (78.54%), Postives = 195/219 (89.04%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSN-TRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQ 60
           MA + SP+ASQL SSF+S++ ++ L  PKG+S +P    PT R  SFT+RA+++DK TFQ
Sbjct: 1   MAASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           V+QPINGDPFIGSLETPVTSSPLIAWYLSNLP YRTAV+PLLRG+EVGLAHGFFLVGPFV
Sbjct: 61  VVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNTAYAG AGSLAA GL+VILS+CLT+YG++SF EGEPS APSLTLTGRKK PD 
Sbjct: 121 KAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPY+VK
Sbjct: 181 LQTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219

[Close]

BLAST of CsaV3_2G009680.1 vs. Swiss-Prot
Match: sp|Q41385|PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAL PE=1 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.7e-90
Identity = 168/219 (76.71%), Postives = 188/219 (85.84%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT--RTHSFTIRAIQADKPTFQ 60
           MA  TSP+ASQL S F    T+AL+ PKG+S   LR  P+  R  SFT+RAI+ +KPT+Q
Sbjct: 1   MAATTSPMASQLKSGF---TTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQ 60

Query: 61  VIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFV 120
           VIQP+NGDPFIG LETPVTSSPLIAWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFV
Sbjct: 61  VIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFV 120

Query: 121 KAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDP 180
           KAGPLRNT YAG AGSLAA GL+VILS+CLTMYG+ASF EGEPS AP+LTLTGRKK PD 
Sbjct: 121 KAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQ 180

Query: 181 LQTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           LQ+ADGWAKF+GGFFFGG+SGV WA FL+YVLDLPYY K
Sbjct: 181 LQSADGWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216

[Close]

BLAST of CsaV3_2G009680.1 vs. Swiss-Prot
Match: sp|P23993|PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAL PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.9e-79
Identity = 153/218 (70.18%), Postives = 176/218 (80.73%), Query Frame = 0


Query: 1   MATA-TSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQV 60
           MATA   P+ASQ+  S       A   P+G+S + L R P     F ++A+++DKPT+QV
Sbjct: 1   MATAYAPPMASQVMKS-----GLACSKPRGMSGASLTRRP----RFVVKAVKSDKPTYQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPF  
Sbjct: 61  VQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFAL 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
            GPLRNT   G AG+L A GL+ ILSVCLTMYGVASFNEGEPSTAP LTLTGRKK  D L
Sbjct: 121 TGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTA+GW++F+GGFFFGG+SG +WAYFLLYVLDLPY+ K
Sbjct: 181 QTAEGWSQFTGGFFFGGVSGAVWAYFLLYVLDLPYFFK 209

[Close]

BLAST of CsaV3_2G009680.1 vs. Swiss-Prot
Match: sp|P51222|PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea OX=2787 GN=psaL PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 58  QVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPF 117
           + I+P N DPF+G+L TPV++S      L NLPAYR  +SPLLRG+E+G+AHG+FL+GPF
Sbjct: 3   EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPF 62

Query: 118 VKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPD 177
            K GPLR T  A  AG L++ GLI+IL+ CL+MYG  SF               R  + D
Sbjct: 63  DKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKD 122

Query: 178 PLQTADGWAKFSGGFFFGGISGVIWAYFLL 208
           PLQTA+GW +F+ GF  G + G  +AY LL
Sbjct: 123 PLQTAEGWGQFTAGFLVGAVGGSGFAYLLL 138

[Close]

BLAST of CsaV3_2G009680.1 vs. TrEMBL
Match: tr|A0A0A0LHJ8|A0A0A0LHJ8_CUCSA (Photosystem I reaction center subunit XI OS=Cucumis sativus OX=3659 GN=Csa_2G074240 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.5e-115
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CsaV3_2G009680.1 vs. TrEMBL
Match: tr|A0A1S3B555|A0A1S3B555_CUCME (photosystem I reaction center subunit XI, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485887 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 4.3e-115
Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTFQVI 60
           MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPT+QVI
Sbjct: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPTRTHSFTIRAIQADKPTYQVI 60

Query: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120
           QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA
Sbjct: 61  QPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKA 120

Query: 121 GPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180
           GPLRNTAYAGGAGSLAAGGLIVILS+CLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ
Sbjct: 121 GPLRNTAYAGGAGSLAAGGLIVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQ 180

Query: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK
Sbjct: 181 TADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217

[Close]

BLAST of CsaV3_2G009680.1 vs. TrEMBL
Match: tr|W9SVH5|W9SVH5_9ROSA (Photosystem I reaction center subunit XI OS=Morus notabilis OX=981085 GN=L484_015127 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 8.6e-100
Identity = 188/218 (86.24%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQV 60
           MATATSP+ASQL S+F S  +RAL+SPKGLSASPLR +P+ R  SFT++A+Q++KPTFQV
Sbjct: 1   MATATSPMASQLKSNFTSPLSRALLSPKGLSASPLRVLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHG+ LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
           AGPLRNT YAGGAGSLAA GL+VILS+CLTMYGVASFNEGEPSTAPSLTLTGRKK PD L
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTMYGVASFNEGEPSTAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYY K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 218

[Close]

BLAST of CsaV3_2G009680.1 vs. TrEMBL
Match: tr|A0A2P5C2F0|A0A2P5C2F0_9ROSA (Photosystem I PsaL, reaction centre subunit XI OS=Trema orientalis OX=63057 GN=TorRG33x02_299970 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 3.3e-99
Identity = 186/218 (85.32%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQV 60
           MATATSP+ SQL S+F S  +RAL+SPKGLSASPLR +P+ R  SFT++A+Q++KPTFQV
Sbjct: 1   MATATSPMVSQLKSNFTSPLSRALLSPKGLSASPLRLLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
           AGPLRNT YAGGAGSLAA GL+VILS+CLT YG+ASFNEGEPS+APSLTLTGRKK PD L
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTQYGIASFNEGEPSSAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTADGWAKF+GGFFFGGISGVIWAYFLLYVLDLPYY K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYFK 218

[Close]

BLAST of CsaV3_2G009680.1 vs. TrEMBL
Match: tr|A0A2P5CUI2|A0A2P5CUI2_PARAD (Photosystem I PsaL, reaction centre subunit XI OS=Parasponia andersonii OX=3476 GN=PanWU01x14_121740 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 9.5e-99
Identity = 185/218 (84.86%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MATATSPIASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQV 60
           MATATSP+ SQL S+F S  +RAL+SPKGLSASPLR +P+ R  SFT++A+Q++KPTFQV
Sbjct: 1   MATATSPMVSQLKSNFTSPLSRALLSPKGLSASPLRLLPSRRPSSFTVKAVQSEKPTFQV 60

Query: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVK 120
           IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGF LVGPFVK
Sbjct: 61  IQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFLLVGPFVK 120

Query: 121 AGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPL 180
           AGPLRNT YAGGAGSLAA GL+VILS+CLT YG+ASFNEGEPS+APSLTLTGRKK PD L
Sbjct: 121 AGPLRNTPYAGGAGSLAAAGLVVILSICLTQYGIASFNEGEPSSAPSLTLTGRKKEPDQL 180

Query: 181 QTADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 218
           QTADGWAKF+GGFFFGGISGVIWA+FLLYVLDLPYY K
Sbjct: 181 QTADGWAKFTGGFFFGGISGVIWAFFLLYVLDLPYYFK 218

The following BLAST results are available for this feature:

BLAST of CsaV3_2G009680.1 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001267647.1	2.2e-115	100.00	photosystem I reaction center subunit XI, chloroplastic [Cucumis sativus] >BAA11...	[more]
XP_008441854.1	6.4e-115	99.08	PREDICTED: photosystem I reaction center subunit XI, chloroplastic [Cucumis melo...	[more]
Q39654.1	8.4e-115	99.54	RecName: Full=Photosystem I reaction center subunit XI, chloroplastic; Short=PSI...	[more]
XP_022149833.1	3.0e-112	96.77	photosystem I reaction center subunit XI, chloroplastic [Momordica charantia]	[more]
XP_022965497.1	1.1e-111	95.85	photosystem I reaction center subunit XI, chloroplastic [Cucurbita maxima]	[more]

BLAST of CsaV3_2G009680.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12800.1	4.5e-94	78.54	photosystem I subunit l	[more]

BLAST of CsaV3_2G009680.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39654\|PSAL_CUCSA	2.8e-117	99.54	Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus OX=36...	[more]
sp\|Q9SUI4\|PSAL_ARATH	8.1e-93	78.54	Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|Q41385\|PSAL_SPIOL	1.7e-90	76.71	Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea OX=...	[more]
sp\|P23993\|PSAL_HORVU	3.9e-79	70.18	Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare OX=45...	[more]
sp\|P51222\|PSAL_PORPU	2.9e-34	50.00	Photosystem I reaction center subunit XI OS=Porphyra purpurea OX=2787 GN=psaL PE...	[more]

BLAST of CsaV3_2G009680.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHJ8\|A0A0A0LHJ8_CUCSA	1.5e-115	100.00	Photosystem I reaction center subunit XI OS=Cucumis sativus OX=3659 GN=Csa_2G074...	[more]
tr\|A0A1S3B555\|A0A1S3B555_CUCME	4.3e-115	99.08	photosystem I reaction center subunit XI, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|W9SVH5\|W9SVH5_9ROSA	8.6e-100	86.24	Photosystem I reaction center subunit XI OS=Morus notabilis OX=981085 GN=L484_01...	[more]
tr\|A0A2P5C2F0\|A0A2P5C2F0_9ROSA	3.3e-99	85.32	Photosystem I PsaL, reaction centre subunit XI OS=Trema orientalis OX=63057 GN=T...	[more]
tr\|A0A2P5CUI2\|A0A2P5CUI2_PARAD	9.5e-99	84.86	Photosystem I PsaL, reaction centre subunit XI OS=Parasponia andersonii OX=3476 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009538	photosystem I reaction center

Vocabulary: **INTERPRO**
Term	Definition
IPR022980	PSI_suXI
IPR036592	PSI_PsaL_sf
IPR003757	PSI_PsaL

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G009680	CsaV3_2G009680	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G009680.1.cds2	CsaV3_2G009680.1.cds2	CDS
CsaV3_2G009680.1.cds1	CsaV3_2G009680.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G009680.1.exon2	CsaV3_2G009680.1.exon2	exon
CsaV3_2G009680.1.exon1	CsaV3_2G009680.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G009680.1	CsaV3_2G009680.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PFAM	PF02605	PsaL	coord: 59..211 e-value: 7.8E-59 score: 197.5
IPR003757	Photosystem I PsaL, reaction centre subunit XI	PRODOM	PD005947		coord: 60..207 e-value: 1.0E-56 score: 556.0
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	GENE3D	G3DSA:1.20.1240.10		coord: 54..217 e-value: 2.0E-75 score: 253.8
IPR036592	Photosystem I PsaL, reaction centre subunit XI superfamily	SUPERFAMILY	SSF81568	Photosystem I reaction center subunit XI, PsaL	coord: 60..216
IPR022980	Photosystem I, reaction centre subunit XI	PANTHER	PTHR34803	FAMILY NOT NAMED	coord: 1..217
None	No IPR available	PANTHER	PTHR34803:SF5	SUBFAMILY NOT NAMED	coord: 1..217