CsaV3_2G009530.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G009530.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	TATA box-binding protein-associated factor RNA polymerase I subunit B
Location	chr2 : 6024343 .. 6029301 (-)
Sequence length	1866

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGAAATTCTCCTTAATATTTTTTATTTTGTTTGAAGCTTAATGATATTTTTTAAACAAAATTTTTTTCAATCAAAATGAAGAGTAAAAGTATGTTTTAATGTTGGCAAGTTGAAAAGTATTTTTGACATAAAAGTTGTATTATTTTTCTTGTGATTTAGTCTATTTTCCCAACAAAATTTGAACAGTTTCATATTCTTTTTCACCTCATCCTTCTTCCTTTTCCTAAACTACCGCCGCCGGCCACCGCCACTGTCGTCTCCTAGCCACCGCCGGTACCTATCTCTCTCTCCAACCGGTCCTCACAGCCGCACAGCCTGTTCTTCAGTCCACCGCTGCTCGCGCCGCTCGCCGCCGGTGCTTGGGTCAAGGCCTTTGTTTGGTAAGGATTGATGTTTTATGGATTTTTGTTGAGTTTTACCCAATACCCATGAAAAATTAGGCTAAACCCCCTTTATATCCCATGTTTTTAAGTGTTGGATTGAGGTCTTGAGTGAGAATTAGCTTACTGTCTAGCACGTACGGGTTCGTTTACGGCGAGTTGTTTCGTGAGTTTTAAGGCCATTGTGTAGACCCTTAGATACCCAGTAATAATTGGTTTAAGTATTGACTTGATCTTGGCCTTTGAAAGGCTTAGAGCTATTATCCATTGGGATTTAATAGGGTATTTCGGTAAATTAGTGTTTGGTTCTCGTTGATCTATAAGCTTTGGAGTTGGTTTGGGTCAAACCACTTATGGGCGAGAATTTTGATGTTTGGTTTTAATCCTTTTGGTTATTTCGGATATTCGGTTTCTTTGGGTTTAAACTTGGATTTATATTTAGGTCCTAATTAAGACTTCTGCTGGATTTATGTCTTATGATTTTATTCTTTAAATGTTTGGTGTGCTAGCGTGCCTTCGGATTTTATTCATCTATGTCCCATTATTTTATTCTTTTAGACCTTTATTCTATGAAAATGTTTTATTTATTTTAATTGATCTTTTAAGAATTTTAGATTTTCAAGCTTATGAATGCATGCAGTAGAAAGTTGAGTTTTTACAGATAACACCTCACTTTCAACCTTTCTAAACTTGTTTGAAGTGCTGTAAATTGGTTTATAACTCTTGGAGATTATATTGTAATTTGGAACTGAGTTGGAGCGTTTGGTTTAAGGCTTAAGTTGTTTTTGGTTGGTTTATTCATTATGGGCACTCTTTGGGATTCTGATCAGGGTTTCGAACTGAGAGTTGTTTAAATATTTCATTCATATAATAATTTGATTGATAATCATTTTCTGAATTTTGCGTTTCCATTTTACCTTCAAGATCTCAAATGGCAGACCCCAGCAACTTGTCTTGCTACAACTGTGGCAGCATTGGGCTTACAGATGGTTTTGATGGCTTCTTCTACTGCCTTCAATGTGGTTCCCAGGCTGATGACATCATCGACACTGGTGTTGCTGAGGAGGATTTGGTTTTAAGAGATGTTGGTAAATCTGGTGCCCCAATCTACTCACAATCTCACACTCGCCGCCGTAATCCAACCGTGTTGAAGGTGGAACCCCTATCTCAGTCTCAATCACTTTTTGGTACAAGTCAGTCTGAGTTCTGGGATAGTCTTAATTTAATGGAAGACCCATCTGGCAATGTAGGTGGAAAGGATGGTGACATTGTGATGTTAAACGATGGTGTCGGGCCTACTGGTCCAGAGGATTTTGGGTCTGGTGATGTGCTATCTGGAAAACCAAGTTTTGAGGAGTATGCTGATGAAGTGAGGATGAGGTATGTAATGGGGTTGCAGCTGATTATGGAGCTTCAGTGCGAAGTTTTGGTGAAGGAATTTAAGGCAACCCCTATAATTTGTGGGTTGGCTGCGAGCATTTGGTTGAGGTTTGTGACTGCTACACGGGTTTTTGATGAGGATTGGGCCTTTCAGACCGTCCAGGAATCTGAAAGCCAATGCCTAGGTTTGTTAACTCGTTACTTCCACTTAAAGTTCTTGTTTATATTTGATTGTCCATTATAATCATTTTGATGCTTGAAAGTTTTAACTGAAATCTTTAGCTTCAGATTTAAAAGTGGTACTTGTGGGTAGGAGACTTTTAATGTATACCTTTTGTTTGATTATTTTAAACATGGTGAATTCTGATGGTTGTCTTGAAAACTAAACTTTTTTTTTAACTAAAGAAACAAATCTCTCAGATGTATGAAATTTAGAGAAAGAGGCTGCAGCCCAATTCAACAGAGTTACAACTCCAATTGGTCAAAAGAGAGGATAGTCTGTACAAACTATAGAAATGAAAGATATACGTTTGCACCAAGTCATAGCATAAGTTCAGAAAAGTTATCAAAAGTGCTTTCCTTGTCGTTGAAAAGGCAGTTGTTTCTCTCCTTCCATGTAATCCATAAAAAAGGATGAATCAAATTCATCCATATTCTCTTCTCAATGTTCTCATTAGTGTAGGGGTGGCCAATGATATTGCATTGGTCATTTTAGCCTATAATATCGTTTGCATATTCAAATATCATAGTTTTTAGTCTATATGGTCATATGTGATGCCTTTCTCCCAAGATTCTTTGTAACAGTGCTTCATTTTGTCTGACATCCTACAGTTTTGCAAGTACCTTTTTTCACCATCTTAGTGTTGGTTGAGTTTTTTTAATTTATTTTTATGTTTAACTATTTTCACCATCTCAGTATTTTGAGTTCTTGCTGTATTTCTTATTCATTTTAGTTGCAAACTGAATGTTTCTTCACTCAACAGATCCTGAACGCATAAGACGTGTTTGCTCTAGCCATAAAGACGAACCCCACAACTTTTATGGTCAACGAGTAGTAGTTTTATGGGTTAAATCTTTAAGAAAGAAGATACCATTATTTAGTACATTAGCTGTTTCGTTTTTGGCTTGCCATGTTGCTCGGGAAGCAATTTTGCCAACAGACATAATAAAGTGGTCACTTGAGGGGAAACTTCCATATTATGCTGCTTTTGTTGACATTGAAAGTCGCATTGGGAAAACTTCAAGGGCTTGTCCTATAAGTTCAAAGCTTATGCATAGGCCCTCTCGAATTTCGTCGCTGCAGAAATTAGAATCGCTGGCAGCATCGATAGCTCATACCATAGGGTTAAATCTTCCTCCAGTTAATTTTCATTCAATAGCTTGTCGTTATCTCAACAAGCTGGCCCTTCCTGTTGATAAGATTTTACCTCATGCTTGCCGCATTTATGAGTGGTCAATGCCTCCTGATTTGTGGTTATCAACCAATGAATTGAGACTTCCCTCTCGTGTTTGTGTAATGTCAATTCTAATTATAGCAATGAGAATTCTGTATAATCTCCATGGTTTTGGAGAATGGGAAAAGAGTTTGTCTGTTGATTGTGCTTCATGTTTCCCACCACATCAGAAGACGCATTCAAGTCCTGCTAATAATTTTAGTAACATGCAGGCTGATAGTGAAAACAGACCCGGATTTACTTCACACGATGTGGATAATCCATCTGTTTCTCCAGAGAACCCCCATCTCACCACTACAGAGTTTCTTCGCAAAATTGAAGCTCGCTATCATGAGATTGCTGAAACTTATGGTATGATTTCATTATTATTGTATTTTTAAAATTAGACCAACCTTAGTAATACATTTGCTTTTACTTATTACTCTTACCATTACTGTTCGCTTTTGTTTCTTATTAAATTACCATTTGATAGTTCTCAAAATTGTGTTGGCAGAATACTCTAAAGACTTGCCGACCTATCTTCAATACTGTAAGGATGTTGCCTTTGCTGGTTCGGAGTCTTTGTTTATTGATGATCACGATGAACAAAAGATGATCGAAAAATTATGGAATTATTATCAGAATGAAAAGGTAAATGATTAACGACTATCATGCTTAAGTCTTGTGTACCTAGATATTGGGAAAAGATTTTATCTGGCGAAATTAATCTGTGCATAGATGTTGAAAAAATGACTGGGATATAATAGTGTTTCTACTTTGCAATATTACTATCTGTTGTTGGTATGATTCTTACCATATCAATGTTTTTTAGTTGGAAAGCAACAATCATAATGCAAGCATAATTCCTAACTAGAAAAAGAAAAATTGTTAGCAGGATTACGATCAAACAGAAGATGTGGATCAAAATGCTGCTTCCAATCAAAAGAGATTGAGGGAAGGTTCCAATGATCGATTATCCAACGAAAGTAAGAAAGTCAAAGGCGAAGAAGACCGTATTAGCAGAGAATCATTGAATAACAGAACTGGGTCAATTGACTCTCGGCAAAGTCATTCATCAAAAAGTTTAGACAATAGTGATGATGATGAACAATCCTCCGTAGACAAAGCGGCTTCATCCCTAACTTCCATAAATGAAGCGATCAGACAACTGAAACTCGACATGGAGGAGAAAAGGTTCTGCTACATTCCCCCAAGGATTAACCCAAAGAGATTCGATTACCTTCACTACTCAAGGAAGATCGACGAGGGTGCACTGACATATGCTGCTCATGCTGATTACTACATATTGCTACGAGCATGTGCTAGAGCCGCACAAGTTGATATTAGGATAATGCATATTGGAGTGTTGAGTCTTGAGAAAAGATTGTCTTGGTTAGAAGATAGAATCCATAAATCCCTTCGTCTAACACCCACAAGTATTACTTGTGAGTTTTGTAGCGATGTGCCTGATCATGTTGGCTCCGTTGGACTCTCAGATTTGGATATTTAAGTGATTTATTTAGTCTATTCTTTTATTCTACTCATCTCTTCAAAATACATGAAAAATATTGAATATGTTGCAACCAATAACCTTAAGCAATCATTTAGGTTGAATGATTTGGGTTAAATTAAAAATTTGGTGTATGGTTTGGAGAACTAAACTCTAACTTTCTCTTTATTGTAAGAATTTAACCAAGAATGTATAAATATAGGTCTTAATTTTTTATCTGCACCATGTCATTTTTCTTCTAAAAGGTTGGGTTTA

mRNA sequence

ATGTTAAACGATGGTGTCGGGCCTACTGGTCCAGAGGATTTTGGGTCTGGTGATGTGCTATCTGGAAAACCAAGTTTTGAGGAGTATGCTGATGAAGTGAGGATGAGGTATGTAATGGGGTTGCAGCTGATTATGGAGCTTCAGTGCGAAGTTTTGGTGAAGGAATTTAAGGCAACCCCTATAATTTGTGGGTTGGCTGCGAGCATTTGGTTGAGGTTTGTGACTGCTACACGGGTTTTTGATGAGGATTGGGCCTTTCAGACCGTCCAGGAATCTGAAAGCCAATGCCTAGATCCTGAACGCATAAGACGTGTTTGCTCTAGCCATAAAGACGAACCCCACAACTTTTATGGTCAACGAGTAGTAGTTTTATGGGTTAAATCTTTAAGAAAGAAGATACCATTATTTAGTACATTAGCTGTTTCGTTTTTGGCTTGCCATGTTGCTCGGGAAGCAATTTTGCCAACAGACATAATAAAGTGGTCACTTGAGGGGAAACTTCCATATTATGCTGCTTTTGTTGACATTGAAAGTCGCATTGGGAAAACTTCAAGGGCTTGTCCTATAAGTTCAAAGCTTATGCATAGGCCCTCTCGAATTTCGTCGCTGCAGAAATTAGAATCGCTGGCAGCATCGATAGCTCATACCATAGGGTTAAATCTTCCTCCAGTTAATTTTCATTCAATAGCTTGTCGTTATCTCAACAAGCTGGCCCTTCCTGTTGATAAGATTTTACCTCATGCTTGCCGCATTTATGAGTGGTCAATGCCTCCTGATTTGTGGTTATCAACCAATGAATTGAGACTTCCCTCTCGTGTTTGTGTAATGTCAATTCTAATTATAGCAATGAGAATTCTGTATAATCTCCATGGTTTTGGAGAATGGGAAAAGAGTTTGTCTGTTGATTGTGCTTCATGTTTCCCACCACATCAGAAGACGCATTCAAGTCCTGCTAATAATTTTAGTAACATGCAGGCTGATAGTGAAAACAGACCCGGATTTACTTCACACGATGTGGATAATCCATCTGTTTCTCCAGAGAACCCCCATCTCACCACTACAGAGTTTCTTCGCAAAATTGAAGCTCGCTATCATGAGATTGCTGAAACTTATGAATACTCTAAAGACTTGCCGACCTATCTTCAATACTGTAAGGATGTTGCCTTTGCTGGTTCGGAGTCTTTGTTTATTGATGATCACGATGAACAAAAGATGATCGAAAAATTATGGAATTATTATCAGAATGAAAAGGATTACGATCAAACAGAAGATGTGGATCAAAATGCTGCTTCCAATCAAAAGAGATTGAGGGAAGGTTCCAATGATCGATTATCCAACGAAAGTAAGAAAGTCAAAGGCGAAGAAGACCGTATTAGCAGAGAATCATTGAATAACAGAACTGGGTCAATTGACTCTCGGCAAAGTCATTCATCAAAAAGTTTAGACAATAGTGATGATGATGAACAATCCTCCGTAGACAAAGCGGCTTCATCCCTAACTTCCATAAATGAAGCGATCAGACAACTGAAACTCGACATGGAGGAGAAAAGGTTCTGCTACATTCCCCCAAGGATTAACCCAAAGAGATTCGATTACCTTCACTACTCAAGGAAGATCGACGAGGGTGCACTGACATATGCTGCTCATGCTGATTACTACATATTGCTACGAGCATGTGCTAGAGCCGCACAAGTTGATATTAGGATAATGCATATTGGAGTGTTGAGTCTTGAGAAAAGATTGTCTTGGTTAGAAGATAGAATCCATAAATCCCTTCGTCTAACACCCACAAGTATTACTTGTGAGTTTTGTAGCGATGTGCCTGATCATGTTGGCTCCGTTGGACTCTCAGATTTGGATATTTAA

Coding sequence (CDS)

ATGTTAAACGATGGTGTCGGGCCTACTGGTCCAGAGGATTTTGGGTCTGGTGATGTGCTATCTGGAAAACCAAGTTTTGAGGAGTATGCTGATGAAGTGAGGATGAGGTATGTAATGGGGTTGCAGCTGATTATGGAGCTTCAGTGCGAAGTTTTGGTGAAGGAATTTAAGGCAACCCCTATAATTTGTGGGTTGGCTGCGAGCATTTGGTTGAGGTTTGTGACTGCTACACGGGTTTTTGATGAGGATTGGGCCTTTCAGACCGTCCAGGAATCTGAAAGCCAATGCCTAGATCCTGAACGCATAAGACGTGTTTGCTCTAGCCATAAAGACGAACCCCACAACTTTTATGGTCAACGAGTAGTAGTTTTATGGGTTAAATCTTTAAGAAAGAAGATACCATTATTTAGTACATTAGCTGTTTCGTTTTTGGCTTGCCATGTTGCTCGGGAAGCAATTTTGCCAACAGACATAATAAAGTGGTCACTTGAGGGGAAACTTCCATATTATGCTGCTTTTGTTGACATTGAAAGTCGCATTGGGAAAACTTCAAGGGCTTGTCCTATAAGTTCAAAGCTTATGCATAGGCCCTCTCGAATTTCGTCGCTGCAGAAATTAGAATCGCTGGCAGCATCGATAGCTCATACCATAGGGTTAAATCTTCCTCCAGTTAATTTTCATTCAATAGCTTGTCGTTATCTCAACAAGCTGGCCCTTCCTGTTGATAAGATTTTACCTCATGCTTGCCGCATTTATGAGTGGTCAATGCCTCCTGATTTGTGGTTATCAACCAATGAATTGAGACTTCCCTCTCGTGTTTGTGTAATGTCAATTCTAATTATAGCAATGAGAATTCTGTATAATCTCCATGGTTTTGGAGAATGGGAAAAGAGTTTGTCTGTTGATTGTGCTTCATGTTTCCCACCACATCAGAAGACGCATTCAAGTCCTGCTAATAATTTTAGTAACATGCAGGCTGATAGTGAAAACAGACCCGGATTTACTTCACACGATGTGGATAATCCATCTGTTTCTCCAGAGAACCCCCATCTCACCACTACAGAGTTTCTTCGCAAAATTGAAGCTCGCTATCATGAGATTGCTGAAACTTATGAATACTCTAAAGACTTGCCGACCTATCTTCAATACTGTAAGGATGTTGCCTTTGCTGGTTCGGAGTCTTTGTTTATTGATGATCACGATGAACAAAAGATGATCGAAAAATTATGGAATTATTATCAGAATGAAAAGGATTACGATCAAACAGAAGATGTGGATCAAAATGCTGCTTCCAATCAAAAGAGATTGAGGGAAGGTTCCAATGATCGATTATCCAACGAAAGTAAGAAAGTCAAAGGCGAAGAAGACCGTATTAGCAGAGAATCATTGAATAACAGAACTGGGTCAATTGACTCTCGGCAAAGTCATTCATCAAAAAGTTTAGACAATAGTGATGATGATGAACAATCCTCCGTAGACAAAGCGGCTTCATCCCTAACTTCCATAAATGAAGCGATCAGACAACTGAAACTCGACATGGAGGAGAAAAGGTTCTGCTACATTCCCCCAAGGATTAACCCAAAGAGATTCGATTACCTTCACTACTCAAGGAAGATCGACGAGGGTGCACTGACATATGCTGCTCATGCTGATTACTACATATTGCTACGAGCATGTGCTAGAGCCGCACAAGTTGATATTAGGATAATGCATATTGGAGTGTTGAGTCTTGAGAAAAGATTGTCTTGGTTAGAAGATAGAATCCATAAATCCCTTCGTCTAACACCCACAAGTATTACTTGTGAGTTTTGTAGCGATGTGCCTGATCATGTTGGCTCCGTTGGACTCTCAGATTTGGATATTTAA

Protein sequence

MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQRVVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSVDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYDQTEDVDQNAASNQKRLREGSNDRLSNESKKVKGEEDRISRESLNNRTGSIDSRQSHSSKSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSITCEFCSDVPDHVGSVGLSDLDI

Homology

[Close]

BLAST of CsaV3_2G009530.1 vs. NCBI nr
Match: XP_004152882.1 (PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucumis sativus] >KGN61248.1 hypothetical protein Csa_2G074100 [Cucumis sativus])

HSP 1 Score: 1194.1 bits (3088), Expect = 0.0e+00
Identity = 621/621 (100.00%), Postives = 621/621 (100.00%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP
Sbjct: 115 MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 174

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR
Sbjct: 175 IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 234

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI
Sbjct: 235 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 294

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP
Sbjct: 295 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 354

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS
Sbjct: 355 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 414

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI 360
           VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI
Sbjct: 415 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI 474

Query: 361 EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD 420
           EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD
Sbjct: 475 EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD 534

Query: 421 QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKS 480
           QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKS
Sbjct: 535 QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKS 594

Query: 481 LDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID 540
           LDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID
Sbjct: 595 LDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID 654

Query: 541 EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT 600
           EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT
Sbjct: 655 EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT 714

Query: 601 CEFCSDVPDHVGSVGLSDLDI 622
           CEFCSDVPDHVGSVGLSDLDI
Sbjct: 715 CEFCSDVPDHVGSVGLSDLDI 735

[Close]

BLAST of CsaV3_2G009530.1 vs. NCBI nr
Match: XP_008441871.1 (PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucumis melo] >XP_008441872.1 PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucumis melo] >XP_008441873.1 PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucumis melo])

HSP 1 Score: 1103.6 bits (2853), Expect = 0.0e+00
Identity = 557/623 (89.41%), Postives = 569/623 (91.33%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP
Sbjct: 115 MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 174

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLD ERIRRVCSSHKDEPHNFYGQR
Sbjct: 175 IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDTERIRRVCSSHKDEPHNFYGQR 234

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVVLWVKSLRKKIPLF TLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI
Sbjct: 235 VVVLWVKSLRKKIPLFCTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 294

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP
Sbjct: 295 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 354

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMR+LYNLHGFGEWEKSLS
Sbjct: 355 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRVLYNLHGFGEWEKSLS 414

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI 360
           V+CAS FPP+QKTHSSPANNFSNMQADSENRPGFTSHD+DNPSVSPENPHLTTTEFLRKI
Sbjct: 415 VNCASYFPPNQKTHSSPANNFSNMQADSENRPGFTSHDLDNPSVSPENPHLTTTEFLRKI 474

Query: 361 EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD 420
           EARYHEIAETYEYSKDLP+YLQYCKDV FAGSESLFIDDH+EQKMIEKLWNYYQNEKD+D
Sbjct: 475 EARYHEIAETYEYSKDLPSYLQYCKDVVFAGSESLFIDDHEEQKMIEKLWNYYQNEKDHD 534

Query: 421 QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHS--S 480
           QTEDVDQN ASN KRLREGSN                      NNRTGSIDSRQSHS   
Sbjct: 535 QTEDVDQNVASNLKRLREGSNDRLSSESKKVKGEEDCISGESSNNRTGSIDSRQSHSXXX 594

Query: 481 KSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRK 540
                               LTSINEAIRQLKLDMEEKRFCYIPPR NPKRF YLHYSRK
Sbjct: 595 XXXXXXXXXXXXXXXXXXXXLTSINEAIRQLKLDMEEKRFCYIPPRANPKRFGYLHYSRK 654

Query: 541 IDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTS 600
           IDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHK+LRLTP+S
Sbjct: 655 IDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKTLRLTPSS 714

Query: 601 ITCEFCSDVPDHVGSVGLSDLDI 622
           +TCEFCSDVP+H+ SVGLSDLDI
Sbjct: 715 VTCEFCSDVPNHIDSVGLSDLDI 737

[Close]

BLAST of CsaV3_2G009530.1 vs. NCBI nr
Match: XP_022149924.1 (TATA box-binding protein-associated factor RNA polymerase I subunit B [Momordica charantia])

HSP 1 Score: 914.1 bits (2361), Expect = 2.6e-262
Identity = 477/630 (75.71%), Postives = 528/630 (83.81%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           +L+DGVGPTGPEDFGSG VLSG PSFEEYA+EVRMRYVMGLQL++ELQCE LVKEFKA+P
Sbjct: 109 LLDDGVGPTGPEDFGSGGVLSGAPSFEEYAEEVRMRYVMGLQLMVELQCEALVKEFKASP 168

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           +ICGLAASIWLRFVTATRVFDEDWAF+ VQ+SESQC DP  IR V S HK EPHN +GQR
Sbjct: 169 VICGLAASIWLRFVTATRVFDEDWAFEAVQDSESQCQDPGNIRPVSSRHKAEPHNLFGQR 228

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVV+WVKSLRKKIPL  TLA+SFLACHVAREAILPTDI+KWSLEGKLPY+AAF+DIE+RI
Sbjct: 229 VVVVWVKSLRKKIPLSCTLAISFLACHVAREAILPTDIMKWSLEGKLPYFAAFIDIENRI 288

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           G+TSRACPISSK M+RPSRI  LQKLESLAASIAHTIGLNLPPVNFH IACRYL+KL+LP
Sbjct: 289 GQTSRACPISSKHMYRPSRIPPLQKLESLAASIAHTIGLNLPPVNFHLIACRYLDKLSLP 348

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           V+KIL HACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILY+LHGFGEWEKSLS
Sbjct: 349 VEKILHHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYDLHGFGEWEKSLS 408

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPEN-----PHLTTTE 360
           ++CAS FPP+QKTHSSPA+NFSN QAD EN  GFTSH+VDN S S EN     P LTTTE
Sbjct: 409 INCASSFPPNQKTHSSPAHNFSNTQADRENGSGFTSHNVDNLSASVENLNLHKPELTTTE 468

Query: 361 FLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQN 420
           FL KIEARY+EIAETYEYS+DLPTYLQ+CKDV FAG ESLF +DH+E+KMIE+ WNYYQN
Sbjct: 469 FLSKIEARYYEIAETYEYSRDLPTYLQHCKDVVFAGLESLF-EDHEEEKMIEQFWNYYQN 528

Query: 421 EK-DYDQTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQ 480
           +K D +QTEDVDQNAASNQKRLREGS                   XXXX           
Sbjct: 529 QKEDSEQTEDVDQNAASNQKRLREGSADRLSNESKKPRGEEGISRXXXXXXXXXXXXXXX 588

Query: 481 SHSSKSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLH 540
                             DKA +  TSI+ ++++LKLDMEEKRFCYIPPR+NPKRF YLH
Sbjct: 589 XXXXXXXXXXXXXXXXXKDKAPAQ-TSIDASVKRLKLDMEEKRFCYIPPRVNPKRFGYLH 648

Query: 541 YSRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRL 600
           YSRKID GALTYAAHADYYILLRACARAAQ+DIRIMHIGVLSLEKRLSWLE RIH SL L
Sbjct: 649 YSRKIDGGALTYAAHADYYILLRACARAAQIDIRIMHIGVLSLEKRLSWLEARIHHSLHL 708

Query: 601 TPTSITCEFCSD-VPDH--VGSVGLSDLDI 622
           TP+ ++CEFCSD VP++  V S+GLSDL+I
Sbjct: 709 TPSGVSCEFCSDVVPENATVDSIGLSDLNI 736

[Close]

BLAST of CsaV3_2G009530.1 vs. NCBI nr
Match: XP_022965475.1 (TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucurbita maxima])

HSP 1 Score: 896.7 bits (2316), Expect = 4.3e-257
Identity = 490/629 (77.90%), Postives = 529/629 (84.10%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           M NDGVGP GPEDFGSG VLSG PSFEEYADEVRMRYVMGLQL+MELQCEVLVKEF A+P
Sbjct: 114 MSNDGVGPIGPEDFGSGGVLSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASP 173

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           +ICGLAASIWLRFVT+T+VFDEDWAF+ VQ+SESQCLDPE IR V S HKDEPHN YGQR
Sbjct: 174 VICGLAASIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQR 233

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVV+WV+SLRKKIPL  TLAVSFLACHVAREAILPTDI+KWSLEGKLPY+AAFVDI  RI
Sbjct: 234 VVVVWVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRI 293

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           G+TSRACPIS K M+RPSRI SLQKLESLAAS+AHTIGLNLPPVNFHSIA RYLNKLALP
Sbjct: 294 GQTSRACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALP 353

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS
Sbjct: 354 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 413

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPE-----NPHLTTTE 360
            +CAS FPP+QK HSSPANNFSN+QA+SEN PGFTSH+VDN SVS +      P LT +E
Sbjct: 414 GNCASSFPPNQKRHSSPANNFSNVQANSENGPGFTSHNVDNLSVSAKFSHLHMPELTASE 473

Query: 361 FLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQN 420
           FL KIEARYHEIAETYEYSK LP YLQ+CKDV FAG ESLF +DH+E+++IE+ W YYQN
Sbjct: 474 FLHKIEARYHEIAETYEYSKSLPIYLQHCKDVVFAGLESLF-EDHEEERLIEQFWKYYQN 533

Query: 421 EKDYDQTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQS 480
           EKD +QTEDVDQNAASNQ        XXXXXXXXXXXXXXXXXXXXXX            
Sbjct: 534 EKDQEQTEDVDQNAASNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 593

Query: 481 HSSKSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHY 540
                                   TS +EAIR+LKLDMEE RFCYIPPR+ PKRF YLHY
Sbjct: 594 XXXXXXXXXXXXXXXXXXXXP---TSKDEAIRRLKLDMEENRFCYIPPRVYPKRFGYLHY 653

Query: 541 SRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLT 600
           SRKIDEGALTYAAHADYY+LLRACARAAQV  RIMHIGVLSLEKRLSWLE RIH SL LT
Sbjct: 654 SRKIDEGALTYAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRIHHSLHLT 713

Query: 601 PTSITCEFCSDV-PDH--VGSVGLSDLDI 622
           P+S++CEFCSDV PDH  + S+ LSDL+I
Sbjct: 714 PSSVSCEFCSDVMPDHATLDSIDLSDLNI 738

[Close]

BLAST of CsaV3_2G009530.1 vs. NCBI nr
Match: XP_022937641.1 (TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucurbita moschata])

HSP 1 Score: 892.5 bits (2305), Expect = 8.2e-256
Identity = 487/629 (77.42%), Postives = 528/629 (83.94%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           M NDGVGP GPEDFGSG  LSG PSFEEYADEVRMRYVMGLQL+MELQCEVLVKEF A+P
Sbjct: 114 MSNDGVGPIGPEDFGSGGALSGAPSFEEYADEVRMRYVMGLQLMMELQCEVLVKEFNASP 173

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           +ICGLAASIWLRFVT+T+VFDEDWAF+ VQ+SESQCLDPE IR V S HKDEPHN YGQR
Sbjct: 174 VICGLAASIWLRFVTSTQVFDEDWAFEAVQDSESQCLDPENIRPVSSRHKDEPHNLYGQR 233

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVV+WV+SLRKKIPL  TLAVSFLACHVAREAILPTDI+KWSLEGKLPY+AAFVDI  RI
Sbjct: 234 VVVVWVQSLRKKIPLSCTLAVSFLACHVAREAILPTDIMKWSLEGKLPYFAAFVDIGDRI 293

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           GKTSRACPIS K M+RPSRI SLQKLESLAAS+AHTIGLNLPPVNFHSIA RYLNKLALP
Sbjct: 294 GKTSRACPISLKHMYRPSRIPSLQKLESLAASVAHTIGLNLPPVNFHSIARRYLNKLALP 353

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS
Sbjct: 354 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 413

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSP-----ENPHLTTTE 360
            +CAS FPP+QK HSSPAN+FSN+QA+SEN PGFTSH+VDN SVS      + P LT +E
Sbjct: 414 GNCASSFPPNQKRHSSPANDFSNVQANSENGPGFTSHNVDNLSVSAKYSHLDMPELTASE 473

Query: 361 FLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQN 420
           FL KIEARYH+IAETYEYSK LPTYLQ+CKDV FAG ESLF +DH+E+++IE+ W YYQN
Sbjct: 474 FLHKIEARYHDIAETYEYSKSLPTYLQHCKDVVFAGLESLF-EDHEEERLIEQFWKYYQN 533

Query: 421 EKDYDQTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQS 480
           EKD +QTED+DQNAASNQKRLR    XXXXXXXXXXXXXXXXXXXXXX            
Sbjct: 534 EKDQEQTEDMDQNAASNQKRLR---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 593

Query: 481 HSSKSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHY 540
                                         IR+LKLDMEE RFCYIPPR+ PKRF YLHY
Sbjct: 594 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRRLKLDMEENRFCYIPPRVYPKRFGYLHY 653

Query: 541 SRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLT 600
           SRKIDEGALTYAAHADYY+LLRACARAAQV  RIMHIGVLSLEKRLSWLE RI+ SL LT
Sbjct: 654 SRKIDEGALTYAAHADYYLLLRACARAAQVSTRIMHIGVLSLEKRLSWLESRINHSLHLT 713

Query: 601 PTSITCEFCSDV-PDH--VGSVGLSDLDI 622
           P+S++CEFCSDV PDH  + S+ LSDL+I
Sbjct: 714 PSSVSCEFCSDVMPDHATLDSIDLSDLNI 738

[Close]

BLAST of CsaV3_2G009530.1 vs. TAIR10
Match: AT2G02955.1 (maternal effect embryo arrest 12)

HSP 1 Score: 427.6 bits (1098), Expect = 1.4e-119
Identity = 256/606 (42.24%), Postives = 348/606 (57.43%), Query Frame = 0


Query: 8   PTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICGLAA 67
           PT P DF +  +     S+E Y DE R RYV    +++  QC+ LV +F  TP+I GL  
Sbjct: 111 PTEPVDFAAETL-----SYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLVG 170

Query: 68  SIWLRFVTATRVFDEDWAFQTVQESESQCLDPE-RIRRVCSSHKDEPHNFYGQRVVVLWV 127
            I LR+V  + V+ +DWA   +++SE Q  D E +  +    HK EP N  G+R V +W 
Sbjct: 171 PISLRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIWF 230

Query: 128 KSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGKTSRA 187
             L+K +PL S+L +SFLACH A   +LPTDI++W+ EGKLPY + F+DI  ++G+ S A
Sbjct: 231 GILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAA 290

Query: 188 CPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVDKILP 247
           CP+   +M RP ++ S Q LE+ A+ IA TIGL LPPVNF+ IA  Y+ +L++P DKIL 
Sbjct: 291 CPVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKILD 350

Query: 248 HACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSVDCASC 307
            A  I  WS+PP+L+LSTNE +LPSRVCVMSILI+A+R+LYN++G G WE+SL    AS 
Sbjct: 351 LARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLGFVNAS- 410

Query: 308 FPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKIEARYHE 367
                               DSE           N   + +     T E L+ +EA+YHE
Sbjct: 411 ------------------DGDSET----------NSGTAEKATEFDTQELLKNLEAKYHE 470

Query: 368 I-AETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD----Q 427
           + AET E  KDL +YL   K+  FAG E    D  D  ++++ LWN Y  ++D +    +
Sbjct: 471 VAAETLESEKDLVSYLSLGKNEFFAGLEEDSPD--DTYRIVDNLWNGYPKDEDIECLPKR 530

Query: 428 TEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKSL 487
             D D + + NQ  L +                         NN   S   R    S  L
Sbjct: 531 GRDWDDDVSLNQLSLYDS-------------------RFSDGNNPCSSSSRRNESVSIGL 590

Query: 488 DNSDDDEQSSVDKAASSLTSINE-AIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID 547
           D S     SS  + +SS   + E AI++L  DM +  FCYIPPR+  KR DYL Y RK +
Sbjct: 591 DLS-----SSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVKRLDYLQYVRKKE 650

Query: 548 EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT 607
           +GAL YAAHADYYILLR CA+ A++D+R MH GVLS E+RL+W+E RI + L LT   +T
Sbjct: 651 DGALIYAAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRIDQVLHLTRPLMT 656

[Close]

BLAST of CsaV3_2G009530.1 vs. Swiss-Prot
Match: sp|Q5XVF0|MEE12_ARATH (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana OX=3702 GN=MEE12 PE=1 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 2.4e-118
Identity = 256/606 (42.24%), Postives = 348/606 (57.43%), Query Frame = 0


Query: 8   PTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICGLAA 67
           PT P DF +  +     S+E Y DE R RYV    +++  QC+ LV +F  TP+I GL  
Sbjct: 111 PTEPVDFAAETL-----SYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLVG 170

Query: 68  SIWLRFVTATRVFDEDWAFQTVQESESQCLDPE-RIRRVCSSHKDEPHNFYGQRVVVLWV 127
            I LR+V  + V+ +DWA   +++SE Q  D E +  +    HK EP N  G+R V +W 
Sbjct: 171 PISLRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIWF 230

Query: 128 KSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGKTSRA 187
             L+K +PL S+L +SFLACH A   +LPTDI++W+ EGKLPY + F+DI  ++G+ S A
Sbjct: 231 GILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAA 290

Query: 188 CPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVDKILP 247
           CP+   +M RP ++ S Q LE+ A+ IA TIGL LPPVNF+ IA  Y+ +L++P DKIL 
Sbjct: 291 CPVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKILD 350

Query: 248 HACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSVDCASC 307
            A  I  WS+PP+L+LSTNE +LPSRVCVMSILI+A+R+LYN++G G WE+SL    AS 
Sbjct: 351 LARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLGFVNAS- 410

Query: 308 FPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKIEARYHE 367
                               DSE           N   + +     T E L+ +EA+YHE
Sbjct: 411 ------------------DGDSET----------NSGTAEKATEFDTQELLKNLEAKYHE 470

Query: 368 I-AETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD----Q 427
           + AET E  KDL +YL   K+  FAG E    D  D  ++++ LWN Y  ++D +    +
Sbjct: 471 VAAETLESEKDLVSYLSLGKNEFFAGLEEDSPD--DTYRIVDNLWNGYPKDEDIECLPKR 530

Query: 428 TEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKSL 487
             D D + + NQ  L +                         NN   S   R    S  L
Sbjct: 531 GRDWDDDVSLNQLSLYDS-------------------RFSDGNNPCSSSSRRNESVSIGL 590

Query: 488 DNSDDDEQSSVDKAASSLTSINE-AIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID 547
           D S     SS  + +SS   + E AI++L  DM +  FCYIPPR+  KR DYL Y RK +
Sbjct: 591 DLS-----SSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVKRLDYLQYVRKKE 650

Query: 548 EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT 607
           +GAL YAAHADYYILLR CA+ A++D+R MH GVLS E+RL+W+E RI + L LT   +T
Sbjct: 651 DGALIYAAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRIDQVLHLTRPLMT 656

[Close]

BLAST of CsaV3_2G009530.1 vs. Swiss-Prot
Match: sp|B8AX23|TAF1B_ORYSI (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19584 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 9.3e-102
Identity = 226/591 (38.24%), Postives = 327/591 (55.33%), Query Frame = 0


Query: 8   PTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICGLAA 67
           P+ P DF +G    G P  E+ A  VR RYV GLQ+I++ Q E LV+  +   +   LA 
Sbjct: 106 PSEPRDFATGANAWGNP--EDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAASLAG 165

Query: 68  SIWLRFVTATRVFDEDWAFQ------TVQESESQCLDPERIRRVCSSHKDEPHNFYGQRV 127
           +IWLR+V A++VFDE W  +      +V+E  S   D +      +      + F     
Sbjct: 166 TIWLRWVAASKVFDEMWVHKMLAIAASVEEGHSASKDKQSELEGDAQKSQSSYEF----- 225

Query: 128 VVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIG 187
             L+++SLR  +P++STLAV FLACHVARE ILPTDI +W++EGKLPY AAF  ++  +G
Sbjct: 226 --LFLRSLRMMLPVYSTLAVCFLACHVARETILPTDICRWAMEGKLPYVAAFTQVDKLLG 285

Query: 188 KTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPV 247
            +   CP+SS+ + RP+R+    +LE+ A SIA  IGL LP VNF+ IA R+L +L+LP+
Sbjct: 286 SSLNDCPLSSRQLFRPTRVIGAWQLEAAAGSIAQKIGLLLPSVNFYLIAQRFLKELSLPI 345

Query: 248 DKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSV 307
           +KILPHACRIYEW+MP +LWLS+N  R+PSRVCVM+ILI+A+R+LY ++G G WE     
Sbjct: 346 EKILPHACRIYEWAMPAELWLSSNPGRVPSRVCVMAILIVALRVLYGINGQGIWESIAQT 405

Query: 308 DCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKIE 367
           + A    P     S+P     +++ DS N   F +                  E L  + 
Sbjct: 406 ENAVGSDPEA---SAP----HSIEPDSNNSEEFDAR-----------------ELLCTLA 465

Query: 368 ARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYDQ 427
           A Y +I   ++YSK++ +YL+YCKDV F G      ++H    +I+  W+ Y+ +    +
Sbjct: 466 ASYDKIDVGHDYSKEVHSYLKYCKDVVFTGMTFSLEEEH----LIDIFWDMYKGK----E 525

Query: 428 TEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKSL 487
              +D+NA   Q++LR                             T  ++ R        
Sbjct: 526 VMLLDENAKLCQEKLR----------------------------TTNGVNKRCR------ 585

Query: 488 DNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKIDE 547
                 +    D    S    N A++ +K  MEE  FCY+ PR       YL Y+R+   
Sbjct: 586 ------DGRFADTKCCSTPLGNCALQSIKSKMEENGFCYVSPRKRLVSDGYLLYTRRESS 615

Query: 548 GALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSL 593
           G+L Y AHADYYILLR  A+ A+VD+R++H  VL LE+RL W+E+R+ +SL
Sbjct: 646 GSLIYVAHADYYILLRPFAKLAEVDVRVLHSSVLKLERRLGWIEERVGRSL 615

[Close]

BLAST of CsaV3_2G009530.1 vs. Swiss-Prot
Match: sp|Q5W770|TAF1B_ORYSJ (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0352700 PE=3 SV=2)

HSP 1 Score: 372.5 bits (955), Expect = 9.3e-102
Identity = 226/591 (38.24%), Postives = 327/591 (55.33%), Query Frame = 0


Query: 8   PTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIICGLAA 67
           P+ P DF +G    G P  E+ A  VR RYV GLQ+I++ Q E LV+  +   +   LA 
Sbjct: 106 PSEPRDFATGANAWGNP--EDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAASLAG 165

Query: 68  SIWLRFVTATRVFDEDWAFQ------TVQESESQCLDPERIRRVCSSHKDEPHNFYGQRV 127
           +IWLR+V A++VFDE W  +      +V+E  S   D +      +      + F     
Sbjct: 166 TIWLRWVAASKVFDEMWVHKMLAIAASVEEGHSASKDKQSELEGDAQKSQSSYEF----- 225

Query: 128 VVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIG 187
             L+++SLR  +P++STLAV FLACHVARE ILPTDI +W++EGKLPY AAF  ++  +G
Sbjct: 226 --LFLRSLRMMLPVYSTLAVCFLACHVARETILPTDICRWAMEGKLPYVAAFTQVDKLLG 285

Query: 188 KTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPV 247
            +   CP+SS+ + RP+R+    +LE+ A SIA  IGL LP VNF+ IA R+L +L+LP+
Sbjct: 286 SSLNDCPLSSRQLFRPTRVIGAWQLEAAAGSIAQKIGLLLPSVNFYLIAQRFLKELSLPI 345

Query: 248 DKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSV 307
           +KILPHACRIYEW+MP +LWLS+N  R+PSRVCVM+ILI+A+R+LY ++G G WE     
Sbjct: 346 EKILPHACRIYEWAMPAELWLSSNPGRVPSRVCVMAILIVALRVLYGINGQGIWESIAQT 405

Query: 308 DCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKIE 367
           + A    P     S+P     +++ DS N   F +                  E L  + 
Sbjct: 406 ENAVGSDPEA---SAP----HSIEPDSNNSEEFDAR-----------------ELLCTLA 465

Query: 368 ARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYDQ 427
           A Y +I   ++YSK++ +YL+YCKDV F G      ++H    +I+  W+ Y+ +    +
Sbjct: 466 ASYDKINVGHDYSKEVHSYLKYCKDVVFTGMTFSLEEEH----LIDIFWDMYKGK----E 525

Query: 428 TEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKSL 487
              +D+NA   Q++LR                             T  ++ R        
Sbjct: 526 VMLLDENAKLCQEKLR----------------------------TTNGVNKRCR------ 585

Query: 488 DNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKIDE 547
                 +    D    S    N A++ +K  MEE  FCY+ PR       YL Y+R+   
Sbjct: 586 ------DGRFADTKCCSTPLGNCALQSIKSKMEENGFCYVSPRKRLVSDGYLLYTRRESS 615

Query: 548 GALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSL 593
           G+L Y AHADYYILLR  A+ A+VD+R++H  VL LE+RL W+E+R+ +SL
Sbjct: 646 GSLIYVAHADYYILLRPFAKLAEVDVRVLHSSVLKLERRLGWIEERVGRSL 615

[Close]

BLAST of CsaV3_2G009530.1 vs. TrEMBL
Match: tr|A0A0A0LHI6|A0A0A0LHI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074100 PE=4 SV=1)

HSP 1 Score: 1194.1 bits (3088), Expect = 0.0e+00
Identity = 621/621 (100.00%), Postives = 621/621 (100.00%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP
Sbjct: 115 MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 174

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR
Sbjct: 175 IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 234

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI
Sbjct: 235 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 294

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP
Sbjct: 295 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 354

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS
Sbjct: 355 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 414

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI 360
           VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI
Sbjct: 415 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI 474

Query: 361 EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD 420
           EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD
Sbjct: 475 EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD 534

Query: 421 QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKS 480
           QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKS
Sbjct: 535 QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHSSKS 594

Query: 481 LDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID 540
           LDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID
Sbjct: 595 LDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRKID 654

Query: 541 EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT 600
           EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT
Sbjct: 655 EGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTSIT 714

Query: 601 CEFCSDVPDHVGSVGLSDLDI 622
           CEFCSDVPDHVGSVGLSDLDI
Sbjct: 715 CEFCSDVPDHVGSVGLSDLDI 735

[Close]

BLAST of CsaV3_2G009530.1 vs. TrEMBL
Match: tr|A0A1S3B4G3|A0A1S3B4G3_CUCME (TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucumis melo OX=3656 GN=LOC103485898 PE=4 SV=1)

HSP 1 Score: 1103.6 bits (2853), Expect = 0.0e+00
Identity = 557/623 (89.41%), Postives = 569/623 (91.33%), Query Frame = 0


Query: 1   MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 60
           MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP
Sbjct: 115 MLNDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATP 174

Query: 61  IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQR 120
           IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLD ERIRRVCSSHKDEPHNFYGQR
Sbjct: 175 IICGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDTERIRRVCSSHKDEPHNFYGQR 234

Query: 121 VVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 180
           VVVLWVKSLRKKIPLF TLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI
Sbjct: 235 VVVLWVKSLRKKIPLFCTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRI 294

Query: 181 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 240
           GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP
Sbjct: 295 GKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALP 354

Query: 241 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLS 300
           VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMR+LYNLHGFGEWEKSLS
Sbjct: 355 VDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRVLYNLHGFGEWEKSLS 414

Query: 301 VDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTTTEFLRKI 360
           V+CAS FPP+QKTHSSPANNFSNMQADSENRPGFTSHD+DNPSVSPENPHLTTTEFLRKI
Sbjct: 415 VNCASYFPPNQKTHSSPANNFSNMQADSENRPGFTSHDLDNPSVSPENPHLTTTEFLRKI 474

Query: 361 EARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYYQNEKDYD 420
           EARYHEIAETYEYSKDLP+YLQYCKDV FAGSESLFIDDH+EQKMIEKLWNYYQNEKD+D
Sbjct: 475 EARYHEIAETYEYSKDLPSYLQYCKDVVFAGSESLFIDDHEEQKMIEKLWNYYQNEKDHD 534

Query: 421 QTEDVDQNAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXXXNNRTGSIDSRQSHS--S 480
           QTEDVDQN ASN KRLREGSN                      NNRTGSIDSRQSHS   
Sbjct: 535 QTEDVDQNVASNLKRLREGSNDRLSSESKKVKGEEDCISGESSNNRTGSIDSRQSHSXXX 594

Query: 481 KSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPKRFDYLHYSRK 540
                               LTSINEAIRQLKLDMEEKRFCYIPPR NPKRF YLHYSRK
Sbjct: 595 XXXXXXXXXXXXXXXXXXXXLTSINEAIRQLKLDMEEKRFCYIPPRANPKRFGYLHYSRK 654

Query: 541 IDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKSLRLTPTS 600
           IDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHK+LRLTP+S
Sbjct: 655 IDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRIHKTLRLTPSS 714

Query: 601 ITCEFCSDVPDHVGSVGLSDLDI 622
           +TCEFCSDVP+H+ SVGLSDLDI
Sbjct: 715 VTCEFCSDVPNHIDSVGLSDLDI 737

[Close]

BLAST of CsaV3_2G009530.1 vs. TrEMBL
Match: tr|A0A2C9WPD2|A0A2C9WPD2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G185700 PE=4 SV=1)

HSP 1 Score: 639.0 bits (1647), Expect = 1.1e-179
Identity = 347/635 (54.65%), Postives = 441/635 (69.45%), Query Frame = 0


Query: 4   DGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIIC 63
           DG+GP  PEDFGSG   +GK S+E+Y +EVR+RYVMG+Q +++LQCE LV++F A+P+IC
Sbjct: 117 DGLGPMEPEDFGSG--AAGKLSYEDYYNEVRIRYVMGMQWMIQLQCEALVEKFNASPLIC 176

Query: 64  GLAASIWLRFVTATRVFDEDWAFQTVQESESQCL-DPERIRRVCSSHKDEPHNFYGQRVV 123
           G+A ++WLR++    VF E WA + + +SE++   DPE +  + S H++EPHN YGQR V
Sbjct: 177 GVAGTVWLRYLAGAGVFKEAWADEVLLDSETKTSGDPEHV-EIRSCHRNEPHNTYGQRAV 236

Query: 124 VLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGK 183
           ++W K LRK IPL  +LA+SFLACHVAREAILPTDI+KWS EGKLPY+AA V+IE R  +
Sbjct: 237 MIWFKYLRKAIPLSCSLAISFLACHVAREAILPTDIVKWSFEGKLPYFAAHVEIEKRFER 296

Query: 184 TSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVD 243
           +S ACPIS +LM RPS+I  +QKLES+AA+IA +IGL+LPPVNF+ IA RYL KL+LPV+
Sbjct: 297 SSPACPISPRLMFRPSQIVPIQKLESMAAAIAESIGLHLPPVNFYGIASRYLKKLSLPVE 356

Query: 244 KILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSVD 303
           KIL  ACRI+EWSMPPDLWLS NELRLP+RVCVMSILI+ +RILYN++GFG WE+SLS  
Sbjct: 357 KILLQACRIHEWSMPPDLWLSINELRLPTRVCVMSILIVTVRILYNINGFGAWERSLSSR 416

Query: 304 CASCFPPHQ-----KTHSS----PANNFSNMQADSENRPGFTSHDVDNPSVSPENPHLTT 363
             S   PH+      T +S     A   S    D  N  G     + N S   + P L +
Sbjct: 417 NCSTSGPHRGGRIDSTFASEILEDAQEVSGCHLDKVNNLG--EKFIKNHS-HLQKPELDS 476

Query: 364 TEFLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNYY 423
           +E L  +EA Y+EI +TYE+ KDLP+YLQ+C DV FAG+    +D  +E+K+IEKLW++Y
Sbjct: 477 SELLYHLEATYNEIGDTYEFRKDLPSYLQHCNDVVFAGAGPSHMDHLEEEKLIEKLWDFY 536

Query: 424 QNEKDYDQTE--DVDQNAASNQKRLREGS---NXXXXXXXXXXXXXXXXXXXXXXNNRTG 483
           QNEKD +  E  +V  ++   QKR R      N                      +N  G
Sbjct: 537 QNEKDSELGEEPEVQSSSVLKQKRPRNDDGYVNSPSEKKKNREGWYDCPSADASIDNADG 596

Query: 484 SIDSRQSHSSKSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIPPRINPK 543
           S   +QS  +    N+   +Q+  +   S  T ++ AIR+LKLDMEE RFCYIPPR+N K
Sbjct: 597 S--PQQSEDNDRFSNNSQGDQNPYNNENSEETLVDTAIRRLKLDMEENRFCYIPPRVNLK 656

Query: 544 RFDYLHYSRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLEDRI 603
           RFDYLHY RK DEGA TY AHADYYILLRACAR AQVDIRIMHIGVLS E+RL+WLE RI
Sbjct: 657 RFDYLHYVRKKDEGAFTYVAHADYYILLRACARVAQVDIRIMHIGVLSFERRLAWLEKRI 716

Query: 604 HKSLRLTPTSITCEFCSDVPDHVGS--VGLSDLDI 622
              L LTP SITCEFC D PDH     +GLS+L++
Sbjct: 717 DHCLHLTPPSITCEFCRDEPDHSKDDLIGLSNLNL 743

[Close]

BLAST of CsaV3_2G009530.1 vs. TrEMBL
Match: tr|A0A2N9IWU8|A0A2N9IWU8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57729 PE=4 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 2.7e-178
Identity = 356/702 (50.71%), Postives = 448/702 (63.82%), Query Frame = 0


Query: 3   NDGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPII 62
           +D +GPTGP+DFGS   L   PS+E+Y   +R+RYV+GLQL+++ QCE LV+EF  +P+I
Sbjct: 119 DDVLGPTGPQDFGSS--LKVMPSYEDY-KMIRIRYVIGLQLMVQFQCEALVREFNVSPLI 178

Query: 63  CGLAASIWLRFVTATRVFDEDWAFQTVQESESQCLD---------PERI--RRVCSSHKD 122
           CGLA +IW+RF+T T VFD+DWA QT++ SE   L          PE +  R + +   D
Sbjct: 179 CGLAGTIWMRFLTRTGVFDDDWADQTIRNSEEDYLKKNKTSEEDRPENLTCRTIRAKDFD 238

Query: 123 EPHNFYGQRVVVLWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYA 182
           EPHN Y QR V++W +SLRK+IPL  TLAVSFLACH+AREAILPTDI+KWSLEGK+PY A
Sbjct: 239 EPHNNYNQRSVIIWYRSLRKRIPLSCTLAVSFLACHIAREAILPTDIVKWSLEGKVPYLA 298

Query: 183 AFVDIESRIGKTSRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIAC 242
           AFV+IE RIG  S  CPIS  +M RPS+    QKLESLAA+IA ++GL+LPPVNF++IA 
Sbjct: 299 AFVEIEKRIGPASANCPISPSIMFRPSQALPFQKLESLAATIAQSLGLDLPPVNFYAIAS 358

Query: 243 RYLNKLALPVDKILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHG 302
           RYL K  LP++KILPHACRIYEWSMPPDLWLSTNELRLP+RVCVMSILI+A+RI+YN+HG
Sbjct: 359 RYLQKFCLPIEKILPHACRIYEWSMPPDLWLSTNELRLPTRVCVMSILIVAIRIIYNIHG 418

Query: 303 FGEWEKSLSVDCASCFPPHQKTHSSPANNFSNMQADSENRPGFTSHDVDN-------PSV 362
           FGEWEKSLS +  S    +Q     P  +F +M  D+    G   HD D+        S 
Sbjct: 419 FGEWEKSLSSNGDSPSTSNQGGQLDPVRDF-DMDDDAGKACGSPCHDADDLGTNSSRHSS 478

Query: 363 SPENPHLTTTEFLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQK 422
             +   L   E L K+EARY+EIA+TYEYSKDLPTYLQYCKDV FAG E  F +DH+E++
Sbjct: 479 QVQKSELNAAELLHKLEARYNEIADTYEYSKDLPTYLQYCKDVVFAGLEPAF-EDHEEKR 538

Query: 423 MIEKLWNYYQNE------------------------------------------------ 482
           +IE+ W++Y+                                                  
Sbjct: 539 LIEEFWDFYEKGLGMGLNLGRKIKVLVVNVENFRGVMAVKVAVAATSSTFEKPTWVVVVV 598

Query: 483 ------------KDYDQTEDVDQ--NAASNQKRLREGSNXXXXXXXXXXXXXXXXXXXXX 542
                       K+ + +ED ++   +A NQKR R+                        
Sbjct: 599 VVGFKSMTWSGFKESEPSEDFEERRRSAFNQKRSRDEGLVSHMPRDNKKIKDEEFV---- 658

Query: 543 XNNRTGSIDSRQSHSSKSLDNSDDDEQSSVDKAASSLTSINEAIRQLKLDMEEKRFCYIP 602
               +GS      H  +S    D D+ S  +   S+ T  NEAIR +KLDMEE RF YIP
Sbjct: 659 ----SGSSPDGTYHVDESKQGFDGDQNSEPNDQISAETRKNEAIRCMKLDMEENRFYYIP 718

Query: 603 PRINPKRFDYLHYSRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLS 622
           PR+N KRFDYLHY RK DEGA TY AHADYYILLRACARAAQVDIRIMHIGVLSLE+RL+
Sbjct: 719 PRVNIKRFDYLHYVRKKDEGAFTYVAHADYYILLRACARAAQVDIRIMHIGVLSLERRLT 778

[Close]

BLAST of CsaV3_2G009530.1 vs. TrEMBL
Match: tr|B9S8W3|B9S8W3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836380 PE=4 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 5.9e-178
Identity = 346/638 (54.23%), Postives = 440/638 (68.97%), Query Frame = 0


Query: 4   DGVGPTGPEDFGSGDVLSGKPSFEEYADEVRMRYVMGLQLIMELQCEVLVKEFKATPIIC 63
           DG+GP  PEDFG   +     S+E+Y +EVR+RYVMG+Q +++LQCE LV++F  +P+IC
Sbjct: 126 DGLGPVEPEDFGGKSL-----SYEDYYNEVRIRYVMGMQWMIQLQCESLVEKFNVSPLIC 185

Query: 64  GLAASIWLRFVTATRVFDEDWAFQTVQESESQCLDPERIRRVCSSHKDEPHNFYGQRVVV 123
           G+A ++WLRF+ AT VF ++WA   + ESESQ        +  SSH++EPHN YGQR V+
Sbjct: 186 GVAGNVWLRFLVATGVFKDNWADDVILESESQVQGEPEDWKPRSSHRNEPHNAYGQRAVM 245

Query: 124 LWVKSLRKKIPLFSTLAVSFLACHVAREAILPTDIIKWSLEGKLPYYAAFVDIESRIGKT 183
           +W K LRK IPL S+LA+SFLACHVAREAILPTDI++WS+EGKLPY+AA V+IE R   +
Sbjct: 246 VWFKYLRKTIPLSSSLAISFLACHVAREAILPTDIVRWSIEGKLPYFAAHVEIEKRFEHS 305

Query: 184 SRACPISSKLMHRPSRISSLQKLESLAASIAHTIGLNLPPVNFHSIACRYLNKLALPVDK 243
           S ACPISS LM RPS+    QKLES+AA+ A +IGL+LPPVNF+ IA RYL  LALPV+K
Sbjct: 306 SPACPISSSLMFRPSQAVPAQKLESMAAAFAESIGLHLPPVNFYEIASRYLKNLALPVEK 365

Query: 244 ILPHACRIYEWSMPPDLWLSTNELRLPSRVCVMSILIIAMRILYNLHGFGEWEKSLSVDC 303
           ILPHACRIYEWSMPPDLWLSTNELRLP+RV VMSILI+A+RILYNL+GFG WE+SLS   
Sbjct: 366 ILPHACRIYEWSMPPDLWLSTNELRLPTRVTVMSILIVAIRILYNLNGFGAWERSLS--S 425

Query: 304 ASCFPPHQKTHSSPANNF-----SNMQADSENRPGFTSHD------VDNPSVSPENPHLT 363
            +C P    ++S PA+       S MQ D+E    F S D      + NPS   + P L 
Sbjct: 426 LNCSP----SNSHPASRLDSMCRSVMQGDAETGSPFYSLDGSAEKFLRNPS-HMQMPELD 485

Query: 364 TTEFLRKIEARYHEIAETYEYSKDLPTYLQYCKDVAFAGSESLFIDDHDEQKMIEKLWNY 423
           + E L  +E +Y+ IA+ YE++KDLP+YLQYCKDV FAG+    +DD +E++++EKLW++
Sbjct: 486 SAELLHHLEVKYNFIADAYEFTKDLPSYLQYCKDVVFAGAGPSHMDDLEEEELMEKLWDF 545

Query: 424 YQNEKDYDQTED---VDQNAASNQKRLR--EGSNXXXXXXXXXXXXXXXXXXXXXXNNRT 483
           YQNEKD +  ++      +  SNQKR R  +GS                       ++  
Sbjct: 546 YQNEKDSELAKEPRTQSSSRLSNQKRSRNDDGSVFVNLSEKEKIKEEWHDSPSADISSHX 605

Query: 484 GSIDSRQSHSSKSLDNSDDDEQSSVDKAASSLTSI-NEAIRQLKLDMEEKRFCYIPPRIN 543
                          N+  ++Q+   K   S  ++   AIR+LKLDMEE RFCYIPPR+N
Sbjct: 606 XXXXXXXXXXXXXXXNNSLEDQNVEHKEKDSEKTLEGRAIRRLKLDMEENRFCYIPPRVN 665

Query: 544 PKRFDYLHYSRKIDEGALTYAAHADYYILLRACARAAQVDIRIMHIGVLSLEKRLSWLED 603
            KRFDYLHY RK DEGA TY AHADYYILLRACAR AQVDIRIMHIGVLS E+RL+WLE 
Sbjct: 666 LKRFDYLHYVRKKDEGAFTYVAHADYYILLRACARVAQVDIRIMHIGVLSFERRLAWLEK 725

Query: 604 RIHKSLRLTPTSITCEFCSDVPDHVGS---VGLSDLDI 622
           RI   L L+P +ITCEFC D+PDH  +   +GLS L++
Sbjct: 726 RIDYCLHLSPPTITCEFCRDMPDHNSNDDVIGLSKLNL 751

The following BLAST results are available for this feature:

BLAST of CsaV3_2G009530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152882.1	0.0e+00	100.00	PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B...	[more]
XP_008441871.1	0.0e+00	89.41	PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B...	[more]
XP_022149924.1	2.6e-262	75.71	TATA box-binding protein-associated factor RNA polymerase I subunit B [Momordica...	[more]
XP_022965475.1	4.3e-257	77.90	TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucurbita...	[more]
XP_022937641.1	8.2e-256	77.42	TATA box-binding protein-associated factor RNA polymerase I subunit B [Cucurbita...	[more]

BLAST of CsaV3_2G009530.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02955.1	1.4e-119	42.24	maternal effect embryo arrest 12	[more]

BLAST of CsaV3_2G009530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5XVF0\|MEE12_ARATH	2.4e-118	42.24	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabido...	[more]
sp\|B8AX23\|TAF1B_ORYSI	9.3e-102	38.24	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza s...	[more]
sp\|Q5W770\|TAF1B_ORYSJ	9.3e-102	38.24	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Oryza s...	[more]

BLAST of CsaV3_2G009530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHI6\|A0A0A0LHI6_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074100 PE=4 SV=1	[more]
tr\|A0A1S3B4G3\|A0A1S3B4G3_CUCME	0.0e+00	89.41	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Cucumis...	[more]
tr\|A0A2C9WPD2\|A0A2C9WPD2_MANES	1.1e-179	54.65	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G185700 PE=4 SV=...	[more]
tr\|A0A2N9IWU8\|A0A2N9IWU8_FAGSY	2.7e-178	50.71	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57729 PE=4 SV=1	[more]
tr\|B9S8W3\|B9S8W3_RICCO	5.9e-178	54.23	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836380 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0070860	RNA polymerase I core factor complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006360	transcription from RNA polymerase I promoter
GO:0001188	RNA polymerase I transcriptional preinitiation complex assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0001164	RNA polymerase I CORE element sequence-specific DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR033599	TAF1B/Rrn7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001188	RNA polymerase I transcriptional preinitiation complex assembly
biological_process	GO:0006360	transcription from RNA polymerase I promoter
cellular_component	GO:0070860	RNA polymerase I core factor complex
molecular_function	GO:0001164	RNA polymerase I CORE element sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G009530	CsaV3_2G009530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G009530.1	CsaV3_2G009530.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G009530.1.cds6	CsaV3_2G009530.1.cds6	CDS
CsaV3_2G009530.1.cds5	CsaV3_2G009530.1.cds5	CDS
CsaV3_2G009530.1.cds4	CsaV3_2G009530.1.cds4	CDS
CsaV3_2G009530.1.cds3	CsaV3_2G009530.1.cds3	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G009530.1.exon6	CsaV3_2G009530.1.exon6	exon
CsaV3_2G009530.1.exon5	CsaV3_2G009530.1.exon5	exon
CsaV3_2G009530.1.exon4	CsaV3_2G009530.1.exon4	exon
CsaV3_2G009530.1.exon3	CsaV3_2G009530.1.exon3	exon
CsaV3_2G009530.1.exon2	CsaV3_2G009530.1.exon2	exon
CsaV3_2G009530.1.exon1	CsaV3_2G009530.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 478..492
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 436..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 463..477
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..497
IPR033599	RNA polymerase I transcription initiation factor TAF1B/Rrn7	PANTHER	PTHR31576	FAMILY NOT NAMED	coord: 25..604