CsaV3_2G008430.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G008430.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	OSBP(Oxysterol binding protein)-related protein 4B, putative
Location	chr2 : 4722259 .. 4723232 (+)
Sequence length	576

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAATTAAAACTCAAATATGAAGAAACTGAGTAGAACAAGAAATACAAACCAATTAAGAAGAAGAAGAAGAAAAAATGAAAACTTTACACATGCTTATAACTTATAAATTAATCCTCATGAAAACAGGATCATGTGCCAAAAAACTCTATCACAATCCTCAAAAACAGCTTCTTTCCAATTGAATTCATTGCTCTATATATACAACCTCACAAACCCACTTTAATCTCATACAACTACGACTTTCAAACTCAAACCACTAAAAAAAACTTCATTAAAACCCAACCCCAAACTCATTCAAATTCCAGGGGGGAAATGGAAGGGAAATTATGTCATTGGGATATGAAGAACAAAGTTATATCAAGAACATCTTCGATTGGTTATTCTTCTCATAGCATTTATTACTCTGGAACAGCTGATCAAGGAGTCCCTTTCAAATGGGAAACACAACCGGGAACTCCCAAAGATCCTCCTCCTCAAGATTTGCTTCCACCTCTCAGCCCTCCGCCTGCCGTTCTCAGCCTTGGGGTACCAAAACCCTACATCGATCAACCAAAATCTCGACCCCTACCTCGGATGAGACTTAGGTTTTGGAAGAAAATCATGAAGAGTAGGGATGGTGGAAAAGCCGCTGCTCAAACAACAACTATAGATCACTATAACGATAAGTTGGAAACCTTTTCATTTCTTAGTTCTGATTGCGAGTTCATGGCGTCTCCTAGTCCTCAGAGCTCAATGTCGTCGTCTTCAACATCGTCATCTTCTTCATCTCCGTCATCTTTCCTCGATTCGTTAAATGTTCGAAATATGAGGAAGGTTTCATTTGGAAGGCCTTCAAGTTGGAATAATGCTTGGCAAATTAATAAAATGCTGGCTTGTTACCATTCCTAAGATGATTTTAGTGTGTTCTTAATTTTAATATATATGATATCAATTTTAAATAAAGGATTTAAATTATTTTGAGCTATAAGCTC

mRNA sequence

ATGGAAGGGAAATTATGTCATTGGGATATGAAGAACAAAGTTATATCAAGAACATCTTCGATTGGTTATTCTTCTCATAGCATTTATTACTCTGGAACAGCTGATCAAGGAGTCCCTTTCAAATGGGAAACACAACCGGGAACTCCCAAAGATCCTCCTCCTCAAGATTTGCTTCCACCTCTCAGCCCTCCGCCTGCCGTTCTCAGCCTTGGGGTACCAAAACCCTACATCGATCAACCAAAATCTCGACCCCTACCTCGGATGAGACTTAGGTTTTGGAAGAAAATCATGAAGAGTAGGGATGGTGGAAAAGCCGCTGCTCAAACAACAACTATAGATCACTATAACGATAAGTTGGAAACCTTTTCATTTCTTAGTTCTGATTGCGAGTTCATGGCGTCTCCTAGTCCTCAGAGCTCAATGTCGTCGTCTTCAACATCGTCATCTTCTTCATCTCCGTCATCTTTCCTCGATTCGTTAAATGTTCGAAATATGAGGAAGGTTTCATTTGGAAGGCCTTCAAGTTGGAATAATGCTTGGCAAATTAATAAAATGCTGGCTTGTTACCATTCCTAA

Coding sequence (CDS)

ATGGAAGGGAAATTATGTCATTGGGATATGAAGAACAAAGTTATATCAAGAACATCTTCGATTGGTTATTCTTCTCATAGCATTTATTACTCTGGAACAGCTGATCAAGGAGTCCCTTTCAAATGGGAAACACAACCGGGAACTCCCAAAGATCCTCCTCCTCAAGATTTGCTTCCACCTCTCAGCCCTCCGCCTGCCGTTCTCAGCCTTGGGGTACCAAAACCCTACATCGATCAACCAAAATCTCGACCCCTACCTCGGATGAGACTTAGGTTTTGGAAGAAAATCATGAAGAGTAGGGATGGTGGAAAAGCCGCTGCTCAAACAACAACTATAGATCACTATAACGATAAGTTGGAAACCTTTTCATTTCTTAGTTCTGATTGCGAGTTCATGGCGTCTCCTAGTCCTCAGAGCTCAATGTCGTCGTCTTCAACATCGTCATCTTCTTCATCTCCGTCATCTTTCCTCGATTCGTTAAATGTTCGAAATATGAGGAAGGTTTCATTTGGAAGGCCTTCAAGTTGGAATAATGCTTGGCAAATTAATAAAATGCTGGCTTGTTACCATTCCTAA

Protein sequence

MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKLETFSFLSSDCEFMASPSPQSSMSSSSTSSSSSSPSSFLDSLNVRNMRKVSFGRPSSWNNAWQINKMLACYHS

Homology

[Close]

BLAST of CsaV3_2G008430.1 vs. NCBI nr
Match: KGN61143.1 (hypothetical protein Csa_2G059740 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60
           MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP
Sbjct: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKL 120
           LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDK+
Sbjct: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKI 119

[Close]

BLAST of CsaV3_2G008430.1 vs. NCBI nr
Match: XP_022929606.1 (uncharacterized protein LOC111436141 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 130/190 (68.42%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60
           M+G   HWDMK+KVI+RTSSIG SS S YY G A +GVPFKWETQPGTPKDPPPQDLLPP
Sbjct: 1   MDGNF-HWDMKSKVIARTSSIGCSSRSTYYCGAA-EGVPFKWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKLE 120
           LSPPPAV+SLG+P P I++PK+RP P M+L FW+++ KSRDGG+ AAQ TTID+ NDKLE
Sbjct: 61  LSPPPAVISLGLPLPCIEKPKTRPRPTMKLWFWRRVKKSRDGGR-AAQATTIDYSNDKLE 120

Query: 121 TFSFLSSDCEFMASPSPXXXXXXXXXXXXXXXXXXXXXXXXXRNMRKVSFGRPSSWNNAW 180
           TFSFLSSDCEFMASP         XXXXXXXXXXX       RNM +VS GRPSS + A 
Sbjct: 121 TFSFLSSDCEFMASP-----RDSMXXXXXXXXXXXLIESLTVRNMGRVSLGRPSSCSTAG 180

Query: 181 QINKMLACYH 191
           +I+++LACYH
Sbjct: 181 KIHRILACYH 182

[Close]

BLAST of CsaV3_2G008430.1 vs. NCBI nr
Match: XP_023546389.1 (uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 129/190 (67.89%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60
           M+G   HWDMK+KVI+RTSSIG SS S YY G A +GVPF WETQPGTPKDPPPQDLLPP
Sbjct: 1   MDGNF-HWDMKSKVIARTSSIGCSSRSTYYCGAA-EGVPFVWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKLE 120
           LSPPPAV+SLG+P P I++PK+RP P M+LRFW+++ KSRDGG+ AAQ TTID+ NDKLE
Sbjct: 61  LSPPPAVISLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDGGR-AAQATTIDYSNDKLE 120

Query: 121 TFSFLSSDCEFMASPSPXXXXXXXXXXXXXXXXXXXXXXXXXRNMRKVSFGRPSSWNNAW 180
           TFSFLSSDCEFMASP          XXXXXXXXXXXX     +NM + S GRPSS + A 
Sbjct: 121 TFSFLSSDCEFMASP-----RDSMSXXXXXXXXXXXXESLTVQNMGRASLGRPSSCSTAG 180

Query: 181 QINKMLACYH 191
           +I+++LACYH
Sbjct: 181 KIHRILACYH 182

[Close]

BLAST of CsaV3_2G008430.1 vs. NCBI nr
Match: XP_022997465.1 (uncharacterized protein LOC111492375 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 133/190 (70.00%), Postives = 153/190 (80.53%), Query Frame = 0


Query: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60
           M+G   HWDMK+KVI+RTSSIG SS S YY G A +GVPFKWETQPGTPKDPPPQDLLPP
Sbjct: 1   MDGNF-HWDMKSKVIARTSSIGCSSRSTYYCGAA-EGVPFKWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKLE 120
           LSPPPAVLSLG+P P I++PK+RP P M+LRFW+++ KSRD G+ AAQ TTID+ N KLE
Sbjct: 61  LSPPPAVLSLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDDGR-AAQATTIDYSNGKLE 120

Query: 121 TFSFLSSDCEFMASPSPXXXXXXXXXXXXXXXXXXXXXXXXXRNMRKVSFGRPSSWNNAW 180
           TFSFLSSDCEFMA  SP    XXXXXXXXXXXXXXX      R+M +VS GRPSS   A 
Sbjct: 121 TFSFLSSDCEFMA--SPRDSMXXXXXXXXXXXXXXXIESLTVRHMGRVSLGRPSSCGTAG 180

Query: 181 QINKMLACYH 191
           +I+++LACYH
Sbjct: 181 KIHRILACYH 185

[Close]

BLAST of CsaV3_2G008430.1 vs. NCBI nr
Match: XP_022153305.1 (uncharacterized protein LOC111020830 [Momordica charantia])

HSP 1 Score: 193.4 bits (490), Expect = 7.3e-46
Identity = 120/190 (63.16%), Postives = 135/190 (71.05%), Query Frame = 0


Query: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60
           M+GK  HWD K+KVISRTSS+G SS SIYY GTA +GVPFKWETQPGTPKDPPPQ++LPP
Sbjct: 1   MDGKF-HWDTKSKVISRTSSVGCSSRSIYYCGTA-EGVPFKWETQPGTPKDPPPQEMLPP 60

Query: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKLE 120
           LSPPPAVLSLG+PKP I++P  RP  RM LRFW+K  K R+ G           + DKLE
Sbjct: 61  LSPPPAVLSLGLPKPCIERPNPRPRLRMSLRFWRKSEKKRENGDGFG-------HPDKLE 120

Query: 121 TFSFLSSDCEFMASPSPXXXXXXXXXXXXXXXXXXXXXXXXXRNMRKVSFGRPSSWNNAW 180
           T SF+SSD EFMA  SP       XXXXXXXXXXX       RNM +VSFGRP      W
Sbjct: 121 TSSFMSSDGEFMA--SPRDSVSSLXXXXXXXXXXXLLESLNVRNMGRVSFGRP------W 173

Query: 181 QINKMLACYH 191
           QIN+ LACYH
Sbjct: 181 QINRFLACYH 173

[Close]

BLAST of CsaV3_2G008430.1 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2))

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-15
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 10 MKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVLS 69
          MK       SSI  +S   YY     +GVPF+WE QPGTP +  P++++PPLSPPPA+LS
Sbjct: 1  MKKDTCKEGSSISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLS 60

Query: 70 LGVPKP--YIDQPKSRPLP-RMRLRFWKKI 97
          LG+PKP   I++PK+   P +++LR WK +
Sbjct: 61 LGLPKPSISIEEPKNFVFPTKLKLRNWKHL 90

[Close]

BLAST of CsaV3_2G008430.1 vs. TAIR10
Match: AT5G01790.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-04
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 25  SHSIYYSGTADQGVPFKWETQPGTPKDPPPQ-DLLPPLSPPPAVLS 70
           S  IYY   A   VPF+WE+ PGTPK P  +   LPPL+PPP+  S
Sbjct: 62  SFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFS 107

[Close]

BLAST of CsaV3_2G008430.1 vs. TrEMBL
Match: tr|A0A0A0LHA2|A0A0A0LHA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059740 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-62
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60
           MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP
Sbjct: 1   MEGKLCHWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPP 60

Query: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKL 120
           LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDK+
Sbjct: 61  LSPPPAVLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKI 119

[Close]

BLAST of CsaV3_2G008430.1 vs. TrEMBL
Match: tr|A0A2P5E200|A0A2P5E200_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235740 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.0e-24
Identity = 68/133 (51.13%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 12  NKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVLSLG 71
           N ++SR SS+GYSS   YY      G+PF+WE QPGTPKDPP ++ LPPLSPPPAV+SLG
Sbjct: 19  NNILSRNSSVGYSSRIYYYRTAGTGGIPFQWEMQPGTPKDPPKEEALPPLSPPPAVISLG 78

Query: 72  VPKP-YIDQPKSRPLPRMRLRFWKKIMKSRDGGKA---AAQTTTIDHYND----KLETFS 131
           +PKP  IDQ   +P  R+ +RFWK+  K+    +A    +  + ID  N     K E F 
Sbjct: 79  LPKPCVIDQEPCKPRRRL-IRFWKRSKKNDHQLRAYNRKSDQSNIDVQNGVSDYKHERFE 138

Query: 132 FLSSDCEFMASPS 137
           F S DCEFMASP+
Sbjct: 139 FCSFDCEFMASPA 150

[Close]

BLAST of CsaV3_2G008430.1 vs. TrEMBL
Match: tr|A0A2P5DRN1|A0A2P5DRN1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038800 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 69/139 (49.64%), Postives = 88/139 (63.31%), Query Frame = 0


Query: 8   WDMKN-KVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPA 67
           +++KN  ++SR SS+GYSS   YY      G+PF+WE QPGTPKDPP ++ LPPLSPPPA
Sbjct: 14  FNVKNDNILSRNSSVGYSSRIYYYRTAGTGGIPFQWEMQPGTPKDPPKEEALPPLSPPPA 73

Query: 68  VLSLGVPKP-YIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYND-------- 127
           V SLG+PKP  IDQ   +P  R+ +RFWK+    R+  +  A     D  +D        
Sbjct: 74  VTSLGLPKPCVIDQEPCKPRRRL-IRFWKR--SKRNDHQLRAYNRKSDQSDDVQNGVSDY 133

Query: 128 KLETFSFLSSDCEFMASPS 137
           K E F F SSDCEFMASP+
Sbjct: 134 KDEKFEFCSSDCEFMASPA 149

[Close]

BLAST of CsaV3_2G008430.1 vs. TrEMBL
Match: tr|W9QUR8|W9QUR8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012856 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 65/135 (48.15%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 12  NKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVLSLG 71
           NK+I+R SS+G  S  IYY  +A +G+PF+WE QPGTPKD P ++ +PPLSPPPA+LSLG
Sbjct: 18  NKMITRNSSVGACSSRIYYYRSAGEGIPFQWEMQPGTPKDLPKEEAIPPLSPPPAILSLG 77

Query: 72  VPKPYIDQPKSRPLPRMRLRFWKKIMK-------SRDGGKAAAQTTTID-----HYNDKL 131
           +PKP I+  + +P  R +L+FW+   K        +  G+A     +ID      Y D  
Sbjct: 78  LPKPCINFEEPKPRSRSKLKFWRNNSKGKITLQVKKISGQATKNNQSIDGITACDYKDH- 137

Query: 132 ETFSFLSSDCEFMAS 135
           E F F SSDCEFMAS
Sbjct: 138 EKFDFCSSDCEFMAS 151

[Close]

BLAST of CsaV3_2G008430.1 vs. TrEMBL
Match: tr|A0A1R3IWH3|A0A1R3IWH3_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09382 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-23
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 0


Query: 12  NKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPAVLSLG 71
           NK+ISR SS+G SS   YY   + +G+PF WE QPGTPK P  +D+LPP+SPPPA+LSLG
Sbjct: 17  NKIISRNSSVGCSSRIYYY--RSSEGIPFNWEMQPGTPKQPQEEDILPPISPPPAILSLG 76

Query: 72  VPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYNDKLETFSFLSS-DCE 131
           +PKP I+  + +P  + R +FWK+  KS    K      T D+++DK   +   SS D +
Sbjct: 77  LPKPCINIEEPKPSIKQRFKFWKQGKKSHGNKKQDLYHGTHDYHSDKYSNYEMCSSDDGD 136

Query: 132 FMASP 136
           FMASP
Sbjct: 137 FMASP 139

The following BLAST results are available for this feature:

BLAST of CsaV3_2G008430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61143.1	2.5e-62	99.16	hypothetical protein Csa_2G059740 [Cucumis sativus]	[more]
XP_022929606.1	2.3e-55	68.42	uncharacterized protein LOC111436141 [Cucurbita moschata]	[more]
XP_023546389.1	1.5e-54	67.89	uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo]	[more]
XP_022997465.1	3.3e-54	70.00	uncharacterized protein LOC111492375 [Cucurbita maxima]	[more]
XP_022153305.1	7.3e-46	63.16	uncharacterized protein LOC111020830 [Momordica charantia]	[more]

BLAST of CsaV3_2G008430.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25845.1	4.8e-15	47.78	BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela...	[more]
AT5G01790.1	1.7e-04	52.17	unknown protein	[more]

BLAST of CsaV3_2G008430.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G008430.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHA2\|A0A0A0LHA2_CUCSA	1.7e-62	99.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059740 PE=4 SV=1	[more]
tr\|A0A2P5E200\|A0A2P5E200_9ROSA	4.0e-24	51.13	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235740 PE=4 S...	[more]
tr\|A0A2P5DRN1\|A0A2P5DRN1_PARAD	1.2e-23	49.64	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038800 PE...	[more]
tr\|W9QUR8\|W9QUR8_9ROSA	2.0e-23	48.15	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012856 PE=4 SV=1	[more]
tr\|A0A1R3IWH3\|A0A1R3IWH3_COCAP	5.8e-23	48.80	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09382 PE=4 ...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G008430	CsaV3_2G008430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G008430.1.exon1	CsaV3_2G008430.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G008430.1.cds1	CsaV3_2G008430.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G008430.1	CsaV3_2G008430.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..157
None	No IPR available	PANTHER	PTHR33257	FAMILY NOT NAMED	coord: 12..159
None	No IPR available	PANTHER	PTHR33257:SF6	SUBFAMILY NOT NAMED	coord: 12..159