CsaV3_2G003330.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G003330.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 1595392 .. 1598066 (+)
Sequence length171
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATAAATAGTTTGATTTTTAAAAACATTTTCCTTATTTAAATTACATAAACTATTATAAAATAATTATAAAATAAAGAAGTATAATAATTAAATTTTTATTTCGATCCTAAATAATAATTAGTAAATAATTGGTGGGGCATTTTGCAAAAATAGTTTCCGAGATTTCTCCGGCGCCAACGAAACCGGCGAAATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGAACTTATCCATTTCATATACTTCTCTGATCTCCGATTAGTTGGCCTAGTGAACGGGAACGATAGGGGATTAGTCCGATTCTGATCGTCCGCGTTTGCGGAAAATTCTAGGAAGGCTACAGCAAATTCTGCTTCGATCAGTGAAGCTGCCTTTCTAAAGAGTAAGTGAGCTTTTTGTTAGTATTGTAGGAAGCAATAAGCATACCCTCTTATCATGTTTGAAATCTCTTTGATTATTTCTGATGGACATTAGAATTTTTGTAGAATATACTTGATGAGCTGAAAGGATTTAGTTTTGATATCATCAGATTGTTCTGTACTTTTCATGTAATGACATTAGATAGAAACATAATCATAATTTTCAGGGAGAAGGAAAACTCAAGCAATTATGTCTTACTAACAAAAACTTCTTGTTGGAGGATGAATGAATAATCAAATACCGAACAAAACCCAGATCAAAAAATGTTTAAAGAAATAGCCAAGAAACTAGTTCTTAAGATATTATTCACGTGATACATTTTGGTTATTGGTCATTTCTCATATGATAAAATGGCTACTGACGTTTTGTTCATCAAGTTTCTGAAACTCCTTTTGTGCTGCTTCTTACATGACTACAAGTGTATTTACTATTATTGATAGACTGATTGAAGCCTTTCTGTCTTGGTCTGTGTATGAACTGAGTTGTACTCGAAATTGAGTAAAGCATCACCACTATGTCGAGGGAGTTTTCATTAATACTAATCAAAGACGAAAATCTAAAGTTTGAATTTTCATGGAGATGATAGACACTTATCTATCATGAAGATCAGTAGTCTTCCTTAAAACCGCTACTTATTCTTAAACAAAGAGTGTACGCTTGCCAAGACTGTTTCTGGTTGAGACGTGTTAATGAAATTCATCCCGTGAAACAATGTCCCATTATCACATTAATTTGACAGTGGATCTTTTGGATTCCATTGATGACCTGTAGTTATTTCATTCAACCTTTTTCTTTAAATCGCCTAGAGTCTGTTTCTCATGGGACCAATCCACCCTAATTAAGTTGTGATGTCACAATCACATAATACTTTACTTGGTTCTCAACTTGGCTAAGTTGGGAAATTTTGCAAATCCAAAGTAAGTCACATGGGGAGTCTGTTCATTTCATCCTATCTTAGCAAAAGTGGTTTAAGGTTGGATCACTTCTTATCAAGGTGATTTTTGGAAAATTCAAGCGGAGGCAATTAAAGCATCTTTGGTTTGATGTCTAAAGATAATACCTTTGGAGTAATAACGGAGTGGAATTGTTTATAGGTATCATCTGAAAACGATATCATTGTAGTCTTTCATTAGGGAAATGCTTAGAGTGAGTTTGACCTTCGATTTCATGAGTTGGTGTTATATAACTCAACTTCGATAGTGTTCAGTATTGCAGTTTACACATTCATCAAACAACTTCATCTTTCCCTATTTCTCTCTTTTGAACATTTATAAAGAAACTTCAACTTACAACTCTACACCTCAAACATAAACATTTGAACTCTAACATGTTAACTCCAAGTTTCAAAATTTAACTTAACACCCCTTATATTTTTAGTTAAATTTATAAAATAATAACTAGTTTTTAACCTTCCAAAATTTACCTTGGATTTTTAGAACTAAATGGGTGAAAGACAAACTCGAGTCGTGTCACTTCAAACATTCAGGACAGGACTCCTTTTTGTGCATTGCTCATTTGCCTTTAGATATTGACATATTGTCCTAAGGTTCTTGGCACTTGCGATTGGTTCTTGACTTTGTGTAACAAAATTTATGATACTTTTGCCTCCATTTTTGTGGGACATCCCTTTCACAAGGTGTGAAGAAGATTCTGTGGCTCACTCTGGTTTTCTTCATATTTCTATGGGCGAGAGGAATGGAAAAAGTTTCGGAGACTCTTTCTCTACTCATAATTCACGTGCAGGTGTTTATTTCATTTATCACTGAAATGTTGTTGTATGATTTAGGAAAAGTTTGTAAGCCAATAAGATAAACTACGAATGTGTATGCCAAAGAAATCAGTAGGATCAAGAAGCATGATTTGTAATTGAAATAAAACGTTGTTGTTATATGACTAAGATCTTGAGCAAAATACATTGAGGATTGGATTTAGTATCTCTTTGGTCCCTAAGGTTGGCCACTTTTAGTACTCGAGCTAAAATTAATTCAATAAATAGCTGTTAAACTATTACTTGACCTATAAAAAATGATGTGACGGTTAGGTTTCTTATTGATTGTGTATTGTTGAGTTAGAACGCTACTAATATTTCTTATAGCAAGGTGACTTCTATTTTTC

mRNA sequence

ATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGA

Coding sequence (CDS)

ATGCTGAGAAGACAACCCACCATGATCGACGTCGAAATCGAGGATAAGGAAGAACTCGAACAACTCCGTAAACGCCCCGCCGCCGCCTCCACCTACTCCTCTCTCCTCCATAACCTCAGTCGGAATAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGA

Protein sequence

MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS
Homology
[Close]
BLAST of CsaV3_2G003330.1 vs. NCBI nr
Match: KGN60724.1 (hypothetical protein Csa_2G008400 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 57
          MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 56

[Close]
BLAST of CsaV3_2G003330.1 vs. NCBI nr
Match: KYP57339.1 (hypothetical protein KK1_003599 [Cajanus cajan])

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAAST-------YSSLLHNLSRNKDPASKAQRLG 57
          MLRR+PT I V+IEDKEELE+ R+R AAA+         ++LL  L R +DP+SKA R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAATATPNAAPGTAALLRQLDRVEDPSSKAHRIG 60

[Close]
BLAST of CsaV3_2G003330.1 vs. NCBI nr
Match: KYP64161.1 (hypothetical protein KK1_018751 [Cajanus cajan])

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-04
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEELEQLRKR-------PAAASTYSSLLHNLSRN--KDPASKAQR 57
          MLRR+PT I+V+IEDKEELE+ R+R       P AA+  ++LL  L R   +DP+S A R
Sbjct: 1  MLRRKPTKIEVKIEDKEELEEARRRYAASIATPNAATATATLLRQLDRGGAEDPSSIAHR 60

[Close]
BLAST of CsaV3_2G003330.1 vs. NCBI nr
Match: KGN60725.1 (hypothetical protein Csa_2G008650 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 4.6e-04
Identity = 34/68 (50.00%), Postives = 39/68 (57.35%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEEL------------EQLRKRPAAASTYSSLLHNLSRNKDPASK 57
          MLRRQP+ I+V+IEDKEEL                           LLHN++RNKD ASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60

[Close]
BLAST of CsaV3_2G003330.1 vs. TrEMBL
Match: tr|A0A0A0LI59|A0A0A0LI59_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 57
          MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAASTYSSLLHNLSRNKDPASKAQRLGISS 56

[Close]
BLAST of CsaV3_2G003330.1 vs. TrEMBL
Match: tr|A0A151SRG3|A0A151SRG3_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_003599 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAAST-------YSSLLHNLSRNKDPASKAQRLG 57
          MLRR+PT I V+IEDKEELE+ R+R AAA+         ++LL  L R +DP+SKA R+G
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRHAAATATPNAAPGTAALLRQLDRVEDPSSKAHRIG 60

[Close]
BLAST of CsaV3_2G003330.1 vs. TrEMBL
Match: tr|A0A151TAU6|A0A151TAU6_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_018751 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEELEQLRKR-------PAAASTYSSLLHNLSRN--KDPASKAQR 57
          MLRR+PT I+V+IEDKEELE+ R+R       P AA+  ++LL  L R   +DP+S A R
Sbjct: 1  MLRRKPTKIEVKIEDKEELEEARRRYAASIATPNAATATATLLRQLDRGGAEDPSSIAHR 60

[Close]
BLAST of CsaV3_2G003330.1 vs. TrEMBL
Match: tr|A0A0A0LFB1|A0A0A0LFB1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-04
Identity = 34/68 (50.00%), Postives = 39/68 (57.35%), Query Frame = 0 

Query: 1  MLRRQPTMIDVEIEDKEEL------------EQLRKRPAAASTYSSLLHNLSRNKDPASK 57
          MLRRQP+ I+V+IEDKEEL                           LLHN++RNKD ASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHNINRNKDQASK 60

[Close]
BLAST of CsaV3_2G003330.1 vs. TrEMBL
Match: tr|A0A2P5D5G0|A0A2P5D5G0_PARAD (Anaphase-promoting complex, subunit CDC OS=Parasponia andersonii OX=3476 GN=PanWU01x14_095140 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.8e-04
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 2   LRRQPTMIDVEIEDKEELEQLRKRPA---AASTYSSLLHNLSR-NKDPASKAQRLGI 55
           LRR+PT I+V+IEDK+ELE  RKR A    A+  SSLL  L R  KD +SKA R+G+
Sbjct: 63  LRRKPTKIEVKIEDKDELEASRKRAAEGTTATATSSLLQQLDRATKDASSKAHRIGL 119

The following BLAST results are available for this feature:
BLAST of CsaV3_2G003330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60724.12.0e-20100.00hypothetical protein Csa_2G008400 [Cucumis sativus][more]
KYP57339.14.9e-0653.97hypothetical protein KK1_003599 [Cajanus cajan][more]
KYP64161.11.6e-0450.77hypothetical protein KK1_018751 [Cajanus cajan][more]
KGN60725.14.6e-0450.00hypothetical protein Csa_2G008650 [Cucumis sativus][more]
BLAST of CsaV3_2G003330.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G003330.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G003330.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LI59|A0A0A0LI59_CUCSA1.4e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1[more]
tr|A0A151SRG3|A0A151SRG3_CAJCA3.2e-0653.97Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_003599 PE=4 SV=1[more]
tr|A0A151TAU6|A0A151TAU6_CAJCA1.0e-0450.77Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_018751 PE=4 SV=1[more]
tr|A0A0A0LFB1|A0A0A0LFB1_CUCSA3.0e-0450.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1[more]
tr|A0A2P5D5G0|A0A2P5D5G0_PARAD6.8e-0456.14Anaphase-promoting complex, subunit CDC OS=Parasponia andersonii OX=3476 GN=PanW... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G003330CsaV3_2G003330gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G003330.1.exon1CsaV3_2G003330.1.exon1exon
CsaV3_2G003330.1.exon2CsaV3_2G003330.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G003330.1.cds1CsaV3_2G003330.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G003330.1CsaV3_2G003330.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..56