CsaV3_2G002630.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G002630.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	SH3 and FCH domain-containing protein DDB_G0271676
Location	chr2 : 1142675 .. 1145277 (-)
Sequence length	231

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGAGCCCAAATGCTGCTTCCCTTATTGGATCACTACAAAATTTTGGTATACACAAAGTTTAGACATTTTTTTTCTTTTGGAATTTGGGTTAGACGTAGATCTCCTATTTCATTTATTTACCTTTGTAGATAAACTGTGTTCAACCTACACTTACTTTTACTTTTACCTTTACCTTTATACATATGGTTCCTATAACTACATACGAAAATGTGACAACTAAGTAAAATTTATATAAAAGAAAATTCAATGACAAAGTTGGTTTAAACTTTTACTGAACCGTTGGTTCGTATGTTGGGTTTGGTTTGGTTGGGTGAACCCACGGTTTTAGAAGTGAATTAGGTTCGAGACAGAGAGGGGTCGTGAATGAAACGAAACTAATTACCACTTTTTTCCATTCCCGCGGGCTGAAGCTGAAAGTTGTTTTCCCAAAAGCCGCTGGTTCCACCTCCGCCATGGCCCCGCCGCCCGTCGATCCCAGTTCTCGGTCAGTCTTTCAATTACTCTTCTCTGTTTCTTCATAGATGTCCTCGATTCATTTTCATTCTCGTTTGTTTCCATTTTCTGAATCTCCCCATGTGAAAATTCTCTCCTTCTTTTCTTCTGAAAAGGGAGGCTTTTCCGAGGAAGCAATCGGCCCCATACAAGTTCTTGGTTCCTCTCGTTTACGCCCCTGTTCTTCCTCTCAGTAAGTTCAATTTTCTGAGGTTTTCGTTTTTTTTTTTTTTTCTTTTTTTGAGCATTTCTGGTTTTTTTTTTCATCTGAGTTTTGTTCGAACGAGATTCTAAATTTGTGGGACTATTTTGTTTTGTTTTTTCAGTTAGAATTGCGCTGCGGAAAAACCCTGTTGTGAGGGATCGGCTGTTCACGGCGGTTTTGGCTGGTGCTTTTGCCCATGGCTTTTACTTGGTGTATCCTCTTGACCCTTATATTTGCTTTTATCATTGCCCCTATCATATTGAATTCACATTCTTGAATCTTGCGATTTCCATGTTTCTCTGTTCATTTGTTGATGATATCAATATGCATCCGCTGTTCTGTAAATTTATCTTCTTATCTAAGAATTTTTATGTTTGGTCCACCATTGGTTGCTATGTATTGTAGAACCGAATTGGTCACGAAGAAAAGGGGATTTGGCTACATTTTGGTGGGGTATTTAGACTAATGTGGAGTTGGAAATTAACGTAGTCTAAGTTCAAAAGTTTTCAGAGTTTTTGATTGATCCTATTAACTACAAAAGTATTGCAGAAATTGTTGATTTTGATTTCTCTGAGAAATGTGATTTCTCATCATTCTTAGAGTCCGTGAGTATTATGGGCCCTTGGAAAAGGCACAGATGTAAATTACTACTTGATTAACGTCTAGCCGATTAGTCATACAAGTGAAAATCTGAGGAGGAATGAAATCACTATGACTTGGCCTACTCGTCAAAAAGAGCCATACAAATAATAAAGAGCTTAGAGGGAATAAGATCAAGTCACCTTAGTCACCTACCTAATATTTTATACCCGACAAGTTACCTTTTCATGGAACCAAATGTAGTTGGGTTAAACAGTTGACTTGTAAGAATAGTCCAAATAAGCGCAAGCTAGCTTGGACTCTCATGTATGTGTGTGTGTATTCATAAGGTAGGAGGTTAGAGTTTAATTTCGGGGAATTATGTGCTACTTCATAAGGGACGTTCATAGGTTGCTCTGTCAATTTGCTGGGTTTCTAAATAGGTTGCTCTGTCAATTTGCTGGGTTTCTAAATGTTGTTTAGCAATTGACCATGTGATCAAGACTTGGACACAAGTGATGTCCCTTGAGATTTGCTGCTCGTTTTAAAGATAAGCTAGCAATTTCCGAGGTTATTGCTTATTGTCAAAGAGTAACATTATGGGCTCAAGTTTGAAGTCCTCTTTACCGTAGAAAATTGAGTTGTGTTCTTAGCCAAAACTTGTCCACGTTGGTATTCTCACGTTCAATTCCTGCCTGTAACTTAGAAATCCCTCACACTTGAGATCTAGAAAAGTATTATTTGAAGCCTTGTACGTTTGGTCCTTACAAACTCATTGGCCAACAAGTTCTATGGGAATGCTCGTAAATATTCGGGCATTTGTCCTTGCTTGCAATGAAACTTTTCCCAATGACATAATGTAGAAGGTAATAGTATGTATTATGTGATTGATGTTCTCCTTGCTATTGCTTGATTGAATTCCTCTTCACTTTATCCATGTTGGAGCTTAAACTTTCCTCAAACATGAGGTGGATTTTTTTTTAATGGTTTTAAAATTTTAAAATATAATTAAATTGTTCAATTACAAAATTGAGTTGTGTTCCTTGATGAGTATGATCAGAACTGATATCTACGATGCTGAGAGCAAGTAAGCTCATTTTTCCCACCATCACCTGATGTTTGCTGAGAGATCATTATTTACTCCTTTTTCTTTTTCTTTTACTCAATAATTCATCCTATCATTTTTCTTCACTTGTTATTATCACTGGAACAATGGATTAAACTTTACCTGAGGATTTCTGACGGCTAGTTAAGACTTTAGAGTTGTGTTGGAAATAATTACTCAAACCACACATCAAGTTTTGGGGTCCCATTACAAGTTGTTA

mRNA sequence

ATGGCCCCGCCGCCCGTCGATCCCAGTTCTCGGGAGGCTTTTCCGAGGAAGCAATCGGCCCCATACAAGTTCTTGGTTCCTCTCGTTTACGCCCCTGTTCTTCCTCTCATTAGAATTGCGCTGCGGAAAAACCCTGTTGTGAGGGATCGGCTGTTCACGGCGGTTTTGGCTGGTGCTTTTGCCCATGGCTTTTACTTGGTAACTGATATCTACGATGCTGAGAGCAAGTAA

Coding sequence (CDS)

ATGGCCCCGCCGCCCGTCGATCCCAGTTCTCGGGAGGCTTTTCCGAGGAAGCAATCGGCCCCATACAAGTTCTTGGTTCCTCTCGTTTACGCCCCTGTTCTTCCTCTCATTAGAATTGCGCTGCGGAAAAACCCTGTTGTGAGGGATCGGCTGTTCACGGCGGTTTTGGCTGGTGCTTTTGCCCATGGCTTTTACTTGGTAACTGATATCTACGATGCTGAGAGCAAGTAA

Protein sequence

MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVTDIYDAESK

Homology

[Close]

BLAST of CsaV3_2G002630.1 vs. NCBI nr
Match: XP_004139325.2 (PREDICTED: uncharacterized protein LOC101204118 [Cucumis sativus] >KGN60655.1 hypothetical protein Csa_2G006000 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60
          MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF
Sbjct: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60

Query: 61 AHGFYLVTDIYDAESK 77
          AHGFYLVTDIYDAESK
Sbjct: 61 AHGFYLVTDIYDAESK 76

[Close]

BLAST of CsaV3_2G002630.1 vs. NCBI nr
Match: XP_008457941.1 (PREDICTED: uncharacterized protein LOC103497503 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-32
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60
          MA PPVDPSSREAFPRKQSAP+KFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF
Sbjct: 1  MASPPVDPSSREAFPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60

Query: 61 AHGFYLVTDIYDAESK 77
          AHGFYLVTDIYDAESK
Sbjct: 61 AHGFYLVTDIYDAESK 76

[Close]

BLAST of CsaV3_2G002630.1 vs. NCBI nr
Match: XP_022938302.1 (uncharacterized protein LOC111444436 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 66/72 (91.67%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 5   PVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 64
           P DP+SREAFP+K+SAP+KFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF
Sbjct: 82  PYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 141

Query: 65  YLVTDIYDAESK 77
           YLVTDIYDAESK
Sbjct: 142 YLVTDIYDAESK 153

[Close]

BLAST of CsaV3_2G002630.1 vs. NCBI nr
Match: XP_022966034.1 (uncharacterized protein LOC111465738 [Cucurbita maxima] >XP_023536899.1 uncharacterized protein LOC111798144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 66/72 (91.67%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 5  PVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 64
          P DP+SREAFP+K+SAP+KFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF
Sbjct: 4  PYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 63

Query: 65 YLVTDIYDAESK 77
          YLVTDIYDAESK
Sbjct: 64 YLVTDIYDAESK 75

[Close]

BLAST of CsaV3_2G002630.1 vs. NCBI nr
Match: XP_022143221.1 (uncharacterized protein LOC111013138 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 8.9e-27
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 5  PVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 64
          P DP++REA  +KQ AP KFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF
Sbjct: 4  PYDPATREAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 63

Query: 65 YLVTDIYDAESK 77
          YLVTDIYDAESK
Sbjct: 64 YLVTDIYDAESK 75

[Close]

BLAST of CsaV3_2G002630.1 vs. TAIR10
Match: AT1G68680.1 (unknown protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-22
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 7  DPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYL 66
          DPS      +K+ AP KFLVPL+YAP LPLIR++LR  PV+RDRLF  VL GAFAHGFYL
Sbjct: 6  DPSKPVMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGAFAHGFYL 65

Query: 67 VTDIYDAESK 77
          VTDIYDAESK
Sbjct: 66 VTDIYDAESK 75

[Close]

BLAST of CsaV3_2G002630.1 vs. TrEMBL
Match: tr|A0A0A0LF45|A0A0A0LF45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006000 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.8e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60
          MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF
Sbjct: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60

Query: 61 AHGFYLVTDIYDAESK 77
          AHGFYLVTDIYDAESK
Sbjct: 61 AHGFYLVTDIYDAESK 76

[Close]

BLAST of CsaV3_2G002630.1 vs. TrEMBL
Match: tr|A0A1S3C7Y6|A0A1S3C7Y6_CUCME (uncharacterized protein LOC103497503 OS=Cucumis melo OX=3656 GN=LOC103497503 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-33
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60
          MA PPVDPSSREAFPRKQSAP+KFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF
Sbjct: 1  MASPPVDPSSREAFPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60

Query: 61 AHGFYLVTDIYDAESK 77
          AHGFYLVTDIYDAESK
Sbjct: 61 AHGFYLVTDIYDAESK 76

[Close]

BLAST of CsaV3_2G002630.1 vs. TrEMBL
Match: tr|A0A022QI52|A0A022QI52_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017412mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-25
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1  MAPPPVDPSSREAFPRKQSAPYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAF 60
          MAPPP+DPS++E   RK+SAP KFLVPL+YAPVLPLIR+ LR  PV+RDRLFTAVLAGAF
Sbjct: 1  MAPPPLDPSNQEFIRRKKSAPIKFLVPLIYAPVLPLIRLTLRHRPVLRDRLFTAVLAGAF 60

Query: 61 AHGFYLVTDIYDAESK 77
          AHG YLV+DIYDAESK
Sbjct: 61 AHGMYLVSDIYDAESK 76

[Close]

BLAST of CsaV3_2G002630.1 vs. TrEMBL
Match: tr|A0A2P4LDX5|A0A2P4LDX5_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_52043 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.8e-23
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 7   DPSSREAFPRKQS--APYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 66
           +PSS+EA  R+Q+   PYKFLVPL+YAPVLPLIR++LR+NPV+RDRLFT VLAGAFAHGF
Sbjct: 431 NPSSQEAAIRRQNKGPPYKFLVPLIYAPVLPLIRLSLRRNPVLRDRLFTIVLAGAFAHGF 490

Query: 67  YLVTDIYDAESK 77
           YLVTDIYDAESK
Sbjct: 491 YLVTDIYDAESK 502

[Close]

BLAST of CsaV3_2G002630.1 vs. TrEMBL
Match: tr|A0A2C9VN89|A0A2C9VN89_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G052500 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.8e-23
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 7  DPSSREAFPRKQS--APYKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGF 66
          DPS REA  RKQ+   P+KFLVPLVYAPVLPLIRI+LR+NPVVRDRLF AVLAGAFAHGF
Sbjct: 6  DPSIREAGVRKQNNGPPFKFLVPLVYAPVLPLIRISLRRNPVVRDRLFMAVLAGAFAHGF 65

Query: 67 YLVTDIYDAESK 77
          YLVTD+YD ESK
Sbjct: 66 YLVTDLYDIESK 77

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139325.2	5.7e-34	100.00	PREDICTED: uncharacterized protein LOC101204118 [Cucumis sativus] >KGN60655.1 hy...	[more]
XP_008457941.1	1.4e-32	97.37	PREDICTED: uncharacterized protein LOC103497503 [Cucumis melo]	[more]
XP_022938302.1	2.5e-29	91.67	uncharacterized protein LOC111444436 [Cucurbita moschata]	[more]
XP_022966034.1	2.5e-29	91.67	uncharacterized protein LOC111465738 [Cucurbita maxima] >XP_023536899.1 uncharac...	[more]
XP_022143221.1	8.9e-27	88.89	uncharacterized protein LOC111013138 [Momordica charantia]	[more]

BLAST of CsaV3_2G002630.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68680.1	1.6e-22	71.43	unknown protein	[more]

BLAST of CsaV3_2G002630.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002630.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LF45\|A0A0A0LF45_CUCSA	3.8e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006000 PE=4 SV=1	[more]
tr\|A0A1S3C7Y6\|A0A1S3C7Y6_CUCME	9.4e-33	97.37	uncharacterized protein LOC103497503 OS=Cucumis melo OX=3656 GN=LOC103497503 PE=...	[more]
tr\|A0A022QI52\|A0A022QI52_ERYGU	1.9e-25	78.95	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017412mg PE...	[more]
tr\|A0A2P4LDX5\|A0A2P4LDX5_QUESU	8.8e-23	79.17	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_52043 PE=4 SV=1	[more]
tr\|A0A2C9VN89\|A0A2C9VN89_MANES	8.8e-23	81.94	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G052500 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G002630	CsaV3_2G002630	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002630.1	CsaV3_2G002630.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002630.1.cds4	CsaV3_2G002630.1.cds4	CDS
CsaV3_2G002630.1.cds3	CsaV3_2G002630.1.cds3	CDS
CsaV3_2G002630.1.cds2	CsaV3_2G002630.1.cds2	CDS
CsaV3_2G002630.1.cds1	CsaV3_2G002630.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002630.1.exon4	CsaV3_2G002630.1.exon4	exon
CsaV3_2G002630.1.exon3	CsaV3_2G002630.1.exon3	exon
CsaV3_2G002630.1.exon2	CsaV3_2G002630.1.exon2	exon
CsaV3_2G002630.1.exon1	CsaV3_2G002630.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37713	FAMILY NOT NAMED	coord: 7..75