CsaV3_1G045870.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G045870.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 31711302 .. 31711829 (-)
Sequence length528
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTTAGACTTATCATCGTACAAATTCCATCTTCCTCTGCAGTCTTAGAGAGTTATCAATTACTGCTAGTGAAAATCTTGTTTAAGCCTAATATTCATAGGGAGTATTCCAAGTCTGTGACTATTGAAACCAAGCCTGCGGTCGACCCTGTTAGGACCAAGGTCGAGGCTATGGGTGTTGGAGAGCCAGATTTTCCCATGATCAGAACTACCAAAGATAAAGCTGATCCTTCTAGGGTCGAGGCTGAGGCTGCGATTATAGACATTAAAGTCAAATTTTCCAAAGCAGTTGAAGCCAAGTTCGAAGCCAACCCTACTAGAGTTATGGATGTTATTGAAGAGTTGCATCTTTCCAAATTCAAGTATGTTGAAGCCAAATTCGAGGTCATCCCTATTACGATCGAGATCGTGGCTAAACCATCTAGAAACAGACTCGAGACTGGGTCGAAAGAAATAGATGATGATGGAAGAAATGTAACTAGGATGGATCTGGCAATCAAAATTTTTAAAAAAATGACGAGTTAA

mRNA sequence

ATGCGGTTTAGACTTATCATCGTACAAATTCCATCTTCCTCTGCAGTCTTAGAGAGTTATCAATTACTGCTAGTGAAAATCTTGTTTAAGCCTAATATTCATAGGGAGTATTCCAAGTCTGTGACTATTGAAACCAAGCCTGCGGTCGACCCTGTTAGGACCAAGGTCGAGGCTATGGGTGTTGGAGAGCCAGATTTTCCCATGATCAGAACTACCAAAGATAAAGCTGATCCTTCTAGGGTCGAGGCTGAGGCTGCGATTATAGACATTAAAGTCAAATTTTCCAAAGCAGTTGAAGCCAAGTTCGAAGCCAACCCTACTAGAGTTATGGATGTTATTGAAGAGTTGCATCTTTCCAAATTCAAGTATGTTGAAGCCAAATTCGAGGTCATCCCTATTACGATCGAGATCGTGGCTAAACCATCTAGAAACAGACTCGAGACTGGGTCGAAAGAAATAGATGATGATGGAAGAAATGTAACTAGGATGGATCTGGCAATCAAAATTTTTAAAAAAATGACGAGTTAA

Coding sequence (CDS)

ATGCGGTTTAGACTTATCATCGTACAAATTCCATCTTCCTCTGCAGTCTTAGAGAGTTATCAATTACTGCTAGTGAAAATCTTGTTTAAGCCTAATATTCATAGGGAGTATTCCAAGTCTGTGACTATTGAAACCAAGCCTGCGGTCGACCCTGTTAGGACCAAGGTCGAGGCTATGGGTGTTGGAGAGCCAGATTTTCCCATGATCAGAACTACCAAAGATAAAGCTGATCCTTCTAGGGTCGAGGCTGAGGCTGCGATTATAGACATTAAAGTCAAATTTTCCAAAGCAGTTGAAGCCAAGTTCGAAGCCAACCCTACTAGAGTTATGGATGTTATTGAAGAGTTGCATCTTTCCAAATTCAAGTATGTTGAAGCCAAATTCGAGGTCATCCCTATTACGATCGAGATCGTGGCTAAACCATCTAGAAACAGACTCGAGACTGGGTCGAAAGAAATAGATGATGATGGAAGAAATGTAACTAGGATGGATCTGGCAATCAAAATTTTTAAAAAAATGACGAGTTAA

Protein sequence

MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMGVGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSKFKYVEAKFEVIPITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS
Homology
[Close]
BLAST of CsaV3_1G045870.1 vs. NCBI nr
Match: KGN66825.1 (hypothetical protein Csa_1G699050 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 4.2e-80
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60
           MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG
Sbjct: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60

Query: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120
           VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK
Sbjct: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120

Query: 121 FXXXXXXXXXXXITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 176
           FXXXXXXXXXXXITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS
Sbjct: 121 FXXXXXXXXXXXITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 175

[Close]
BLAST of CsaV3_1G045870.1 vs. TrEMBL
Match: tr|A0A0A0LY75|A0A0A0LY75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699050 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.8e-80
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60
           MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG
Sbjct: 1   MRFRLIIVQIPSSSAVLESYQLLLVKILFKPNIHREYSKSVTIETKPAVDPVRTKVEAMG 60

Query: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120
           VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK
Sbjct: 61  VGEPDFPMIRTTKDKADPSRVEAEAAIIDIKVKFSKAVEAKFEANPTRVMDVIEELHLSK 120

Query: 121 FXXXXXXXXXXXITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 176
           FXXXXXXXXXXXITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS
Sbjct: 121 FXXXXXXXXXXXITIEIVAKPSRNRLETGSKEIDDDGRNVTRMDLAIKIFKKMTS 175

The following BLAST results are available for this feature:
BLAST of CsaV3_1G045870.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66825.14.2e-80100.00hypothetical protein Csa_1G699050 [Cucumis sativus][more]
BLAST of CsaV3_1G045870.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045870.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G045870.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LY75|A0A0A0LY75_CUCSA2.8e-80100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699050 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G045870CsaV3_1G045870gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G045870.1.cds1CsaV3_1G045870.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G045870.1.exon1CsaV3_1G045870.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G045870.1CsaV3_1G045870.1-proteinpolypeptide