CsaV3_1G039240.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G039240.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 24709265 .. 24709762 (+)
Sequence length243
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGATCCTAGCTCAAGCATTATTTCTTGATATGTGTATGACTAAAATAATAGAAAATGGCCAACTACATAGTCACCATAAACAACATTATGAAAAAGGATAAAAAGCCTCACTGAAACCGACATTTCATAAGATTAATAAACAATCTCCAATTAATTTAAACGAGTGAGATAAAGAGAGGCTACAAAGATTTCCACAATGACTCAACTAGAACCAATAAAACAACTAAATCCAAAAGTTACTACAAAGACAAAGGAGATTGATTCTACCTATTTTGCGATTCGACGGCAGCAAGACTGGAGGCGTATGGACGACGGCGGCAGGCAGGCAGGAGGGTCGGGCGGCTGGAGCTGTGGGCAGCACGATGGCTGACGTGAAGAAGCTTCCTACAGGGCTGAGTGTCTTATCGTGGAGAACTTCGTGAGAAGGATTGGAGTAGAGGGAGAGATGGAGAAAATGGAAGAATTTCTAGAAAAGGGGAAATTGGGAGAAATCTAG

mRNA sequence

ATGACTCAACTAGAACCAATAAAACAACTAAATCCAAAAGTTACTACAAAGACAAAGGAGATTGATTCTACCTATTTTGCGATTCGACGGCAGCAAGACTGGAGGCGTATGGACGACGGCGGCAGGCAGGCAGGAGGGGCTGAGTGTCTTATCGTGGAGAACTTCGTGAGAAGGATTGGAGTAGAGGGAGAGATGGAGAAAATGGAAGAATTTCTAGAAAAGGGGAAATTGGGAGAAATCTAG

Coding sequence (CDS)

ATGACTCAACTAGAACCAATAAAACAACTAAATCCAAAAGTTACTACAAAGACAAAGGAGATTGATTCTACCTATTTTGCGATTCGACGGCAGCAAGACTGGAGGCGTATGGACGACGGCGGCAGGCAGGCAGGAGGGGCTGAGTGTCTTATCGTGGAGAACTTCGTGAGAAGGATTGGAGTAGAGGGAGAGATGGAGAAAATGGAAGAATTTCTAGAAAAGGGGAAATTGGGAGAAATCTAG

Protein sequence

MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIGVEGEMEKMEEFLEKGKLGEI
Homology
[Close]
BLAST of CsaV3_1G039240.1 vs. NCBI nr
Match: KGN66108.1 (hypothetical protein Csa_1G571800 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 2.6e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIG 60
          MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIG
Sbjct: 1  MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIG 60

Query: 61 VEGEMEKMEEFLEKGKLGEI 81
          VEGEMEKMEEFLEKGKLGEI
Sbjct: 61 VEGEMEKMEEFLEKGKLGEI 80

[Close]
BLAST of CsaV3_1G039240.1 vs. TrEMBL
Match: tr|A0A0A0LWH9|A0A0A0LWH9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G571800 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIG 60
          MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIG
Sbjct: 1  MTQLEPIKQLNPKVTTKTKEIDSTYFAIRRQQDWRRMDDGGRQAGGAECLIVENFVRRIG 60

Query: 61 VEGEMEKMEEFLEKGKLGEI 81
          VEGEMEKMEEFLEKGKLGEI
Sbjct: 61 VEGEMEKMEEFLEKGKLGEI 80

The following BLAST results are available for this feature:
BLAST of CsaV3_1G039240.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66108.12.6e-37100.00hypothetical protein Csa_1G571800 [Cucumis sativus][more]
BLAST of CsaV3_1G039240.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G039240.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G039240.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWH9|A0A0A0LWH9_CUCSA1.7e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G571800 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G039240CsaV3_1G039240gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G039240.1.exon1CsaV3_1G039240.1.exon1exon
CsaV3_1G039240.1.exon2CsaV3_1G039240.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G039240.1.cds1CsaV3_1G039240.1.cds1CDS
CsaV3_1G039240.1.cds2CsaV3_1G039240.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G039240.1CsaV3_1G039240.1-proteinpolypeptide