CsaV3_1G039230.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AATCATTTCTATCAACATTTATTTTAATCTATGGTCACGTATTGGTGAGAAATATTTAATATTTGGAAGACGTGACTAAAACCTTCCTTTTTTTAAAAAAAATTATTCTTTACATTTGCCCTTTCCTAAAAGCCCTAGATTTCTCCCAATTTCCCCTTTTCTAGAAATTCTTCCATTTTCTCCATCTCTCCCTCTACTCCAATCCTTCTCACGAAGTTCTCCACGATAAGACACTCAGCCCTGTAGGAAGCTTCTTCACGTCAGCCATCGTGCTGCCCACAGCTCCAGCCGCCCGACCCTCCTGCCTGCCTGCCGCCGTCGTCCATACGCCTCCAGTCTTGCTGCCGTCGAATCGCAAAATAGGTAGAATCAATCTCCTTTGTCTTTGTAGTAACTTTTGGATTTAGTTGTTTTATTGGTTCTAGTTGAGTCATTGTGGAAATCTTTGTAGCCTCTCTTTATCTCACTCGTTTAAATTAATTGGAGATTGTTTATTAATCTTATGAAATGTCGGTTTCAGTGAGGCTTTTTATCCTTTTTCATAATGTTGTTTATGGTGACTATGTAGTTGGCCATTTTCTATTATTTTAGTCATACACATATCAAGAAATAATGCTTGAGCTAGGATCACTATATTTTCAAAACTTGTATTTAGTAAGCATCTTTAATTTGAGTTTGATAGACACAATGGTAATTTTTAGGGTGTTTTAATGGTCAAAGTGTGACAGAGTTGTAATTTGTAGCTGGTCATGAGTTTAAAAGTCACATTTAGGCACTTCTTGGATACTTCTAAGATTGGTTTGAGAGTAAGATGTACAACTTACACATTTGATTTGATTCACACTTTCATGTTGGTTGACTTTTGAAGTCATACTTCAGTATTTTTTTAAAAAAATTTAGAGTTAAAGTGTCACTTAGACTGTTTTAAGAGATTTTGTGGTTGATTTTGAGTTTGGTAGTCACAATTAATAATTTATAAGTTGTTTTGAGAGTTATGACACCTTTTAGGTGATTTTTAGTTTGAAAGTCACATTGACACTTTTTAACTTGTTTTGAGAGTTAAAGTGTCACATAGACACTTTTTAGAGATTTTGTGTTTGGTTTTGAGTTTGGAAGGGCATTTTAACATTTTGAAACTTGACAATTTTTAGGTGATTTAGTTAGTTTTTAGTTTGAAAGTCACGTTTAGGGAGTTTTAATTTGTAATAGGATTTAAAGCGTTACCTAGACATTTTTTAACTTGTTTTCAGAGTTATATTGATACTTTCACACTTTTAAGAAACCTTTTAGGTTGCCATTGATATTATGTGTGGATTTCCTTAAGCTACGATAGTTAATCATGCATATATTTCATATGTATTGTATGCTTGAGTTGTAATATGTTGTGGCTATCATGCCACTACGGTAGCCAATCATGCATATATTTCATACTTATTATACGCTTTAGTTGTAGTATGTTGTAGCTATCCTGCAGCTATGTTAGCCAATCATGCATATGTTTCATATTTATTGTATGGTTTAGTTGTAATATGTCGTGGCTATCTTACATATATTTTGTAGGCTTGAGTTTTAGTCATACTTAAGTAGTTTTAACTTGTTATGACAGTTAAAGTGTTACTTAGACACTTTTTAGATATTTTGTAGTTGGTTTTTAATTTGTAAGTCACACTTGAGTAGTTTTAACTTGTTTTGAGAGTTAAAATGCCACTTAGACAACTTTTTAAAGATTTTGGGATTGATTTTGAGTTAGGAAGGTACAAGTAGAGATTTGTAAGATATTTTGAGATTCAAGACATTTAAAAGGTGATTTTTAGTTGGTTAGTAGTTTCAAAGTCACAGTTGAGTAGTTTTAACTTGTTTTGAGGGTTAAAGTGCAAGGATTAAAGTGCTTGAGGTAGACACTCTTTAACTTGTTTTGACATTTAAAAGGCTACATAAACCCCTTTTTAACTTGTCTTTTTGAGTTAAGTGCTACATAGACACTTTTTTTTGAATATTTTGTGTTTGGTTTTGAGTTTGGAAGGCACACCTAGGCATTTTGAAAGAATTTGTGAGATTTAAGACTTTTAAGTTGATTTTAAGTTTGAAAGTCACACTTATTCATTTTTAACTATTTTTAACTTGTGTTGATAGTTTAAGTGTAAATGTTTTGTTTTAAGTTAGGAAGATACAATTACACATTTTATAAGTTTTGATATTTAAAAGATTAGTAGGTGACTTTTGGTTGTTTTTAGTTTCAAATTACACTTGAGTTGTCGGTGGCTATTAGTCTCTTGAGAATCCAATAAAAGTTAAAAAAATTTGATAAGTCAAACCTTCTATGTTTATTATTTGTTGACAAGCGCATATTTTCCCAATGCAGCTGCCCTAACCAACACAACTACTCACAATTGAGAACCAAACAAATGAAGGAAGAAGAAGTAAATCTCTGCCAAATTCAAGAATGGTATCCCAAATTCAAATCTTTCTCTATCAAAACCTTAATTCACCATCTTCCTGAATCCTTCGTCCATTACCTTCTCGATGACTCTTCCCCTTTCGTCCTTCCCCTTTCCATCTCCAACGATGATGCTCTTCCCAACAGAGTCTTTAATCCCGTAGACGAGCCGGATTTCCAGTTGAAACAAGAATCCGATGACGATTCCGACCAACCCACTTCCCCTCCTCCTTCCTTCCCTGACCTTGAATCCGATGTTAAACACTCCATTTCCTCTCTCGGAGGTTCCGTCTTCCCAAAATTGAACTGGAGCGCGCCTAAAGACTCTGCCTGGATTAGCCCTAATGGAACATTGAAGTGTTCTTCCTTCAGTGAGATTGCTCTCCTACTTCGATCCTCCGATTCTCTTGTTCACGATCTTTGTCATGCCTATGATTCCTGCACCGACAAATCTTCCTCCAGGCCATCCAAATTCTTCCTCGCCCTACGAAAGTGGTACCCATCCCTTCGGCCGGAGATGGAATTTCGTTGCTTTGTTAAGAATCGGAACCTGATTGGCATTTCTCAGCGTGAGGTTACAACGTTCTATCCTGCTTTAGTGGAGAAGAAGGAGAGGTTGAGAGAAGTCATACTGGAATTCTTCATCGACCATGTGAAAGCAAACTTCGAATTGGAGAATTACACGTTGGATGTGTATGTGACAAGAAATGAAAGTGTTAAGATAGTGGATTTTAATCCATGGGGTGCGTTTACACTTCCATTGTTGTTTGATTGGGAGGAACTGGAAGAAGCACAGAAGGAAGAGATTGATTTGAGAATTGTGGAGTGCCGGAGGGCAGTGAGACCAGGGTTGAAGACGGCGGTTCCATTTGATTATTTGGATATGAGTTCTGGAAGTGGTTGGGATCAGTTCTTGAAGAATGCAGATCAAGAATTTCAGCAGCAAACGAGAGATGACAATGATTGATTGATTTGAATTTCTTTCTACATTGCTATGAACATCAATGAGTTTGGACTTTCTGTCCCAACTCATAAGTGTATGGTGAGATTGAATCATTGAAATTATAAGCAAAAATTTGTCAATGTCAACTACTTGGATACCATATTTTTTACCAGCAATAGATTTTTTTAGCATCTTCAAATTGCTACCATTGGGAAGAATAATATGCAAGAGAAATTCACTTTTT ATGAAGGAAGAAGAAGTAAATCTCTGCCAAATTCAAGAATGGTATCCCAAATTCAAATCTTTCTCTATCAAAACCTTAATTCACCATCTTCCTGAATCCTTCGTCCATTACCTTCTCGATGACTCTTCCCCTTTCGTCCTTCCCCTTTCCATCTCCAACGATGATGCTCTTCCCAACAGAGTCTTTAATCCCGTAGACGAGCCGGATTTCCAGTTGAAACAAGAATCCGATGACGATTCCGACCAACCCACTTCCCCTCCTCCTTCCTTCCCTGACCTTGAATCCGATGTTAAACACTCCATTTCCTCTCTCGGAGGTTCCGTCTTCCCAAAATTGAACTGGAGCGCGCCTAAAGACTCTGCCTGGATTAGCCCTAATGGAACATTGAAGTGTTCTTCCTTCAGTGAGATTGCTCTCCTACTTCGATCCTCCGATTCTCTTGTTCACGATCTTTGTCATGCCTATGATTCCTGCACCGACAAATCTTCCTCCAGGCCATCCAAATTCTTCCTCGCCCTACGAAAGTGGTACCCATCCCTTCGGCCGGAGATGGAATTTCGTTGCTTTGTTAAGAATCGGAACCTGATTGGCATTTCTCAGCGTGAGGTTACAACGTTCTATCCTGCTTTAGTGGAGAAGAAGGAGAGGTTGAGAGAAGTCATACTGGAATTCTTCATCGACCATGTGAAAGCAAACTTCGAATTGGAGAATTACACGTTGGATGTGTATGTGACAAGAAATGAAAGTGTTAAGATAGTGGATTTTAATCCATGGGGTGCGTTTACACTTCCATTGTTGTTTGATTGGGAGGAACTGGAAGAAGCACAGAAGGAAGAGATTGATTTGAGAATTGTGGAGTGCCGGAGGGCAGTGAGACCAGGGTTGAAGACGGCGGTTCCATTTGATTATTTGGATATGAGTTCTGGAAGTGGTTGGGATCAGTTCTTGAAGAATGCAGATCAAGAATTTCAGCAGCAAACGAGAGATGACAATGATTGA ATGAAGGAAGAAGAAGTAAATCTCTGCCAAATTCAAGAATGGTATCCCAAATTCAAATCTTTCTCTATCAAAACCTTAATTCACCATCTTCCTGAATCCTTCGTCCATTACCTTCTCGATGACTCTTCCCCTTTCGTCCTTCCCCTTTCCATCTCCAACGATGATGCTCTTCCCAACAGAGTCTTTAATCCCGTAGACGAGCCGGATTTCCAGTTGAAACAAGAATCCGATGACGATTCCGACCAACCCACTTCCCCTCCTCCTTCCTTCCCTGACCTTGAATCCGATGTTAAACACTCCATTTCCTCTCTCGGAGGTTCCGTCTTCCCAAAATTGAACTGGAGCGCGCCTAAAGACTCTGCCTGGATTAGCCCTAATGGAACATTGAAGTGTTCTTCCTTCAGTGAGATTGCTCTCCTACTTCGATCCTCCGATTCTCTTGTTCACGATCTTTGTCATGCCTATGATTCCTGCACCGACAAATCTTCCTCCAGGCCATCCAAATTCTTCCTCGCCCTACGAAAGTGGTACCCATCCCTTCGGCCGGAGATGGAATTTCGTTGCTTTGTTAAGAATCGGAACCTGATTGGCATTTCTCAGCGTGAGGTTACAACGTTCTATCCTGCTTTAGTGGAGAAGAAGGAGAGGTTGAGAGAAGTCATACTGGAATTCTTCATCGACCATGTGAAAGCAAACTTCGAATTGGAGAATTACACGTTGGATGTGTATGTGACAAGAAATGAAAGTGTTAAGATAGTGGATTTTAATCCATGGGGTGCGTTTACACTTCCATTGTTGTTTGATTGGGAGGAACTGGAAGAAGCACAGAAGGAAGAGATTGATTTGAGAATTGTGGAGTGCCGGAGGGCAGTGAGACCAGGGTTGAAGACGGCGGTTCCATTTGATTATTTGGATATGAGTTCTGGAAGTGGTTGGGATCAGTTCTTGAAGAATGCAGATCAAGAATTTCAGCAGCAAACGAGAGATGACAATGATTGA MKEEEVNLCQIQEWYPKFKSFSIKTLIHHLPESFVHYLLDDSSPFVLPLSISNDDALPNRVFNPVDEPDFQLKQESDDDSDQPTSPPPSFPDLESDVKHSISSLGGSVFPKLNWSAPKDSAWISPNGTLKCSSFSEIALLLRSSDSLVHDLCHAYDSCTDKSSSRPSKFFLALRKWYPSLRPEMEFRCFVKNRNLIGISQREVTTFYPALVEKKERLREVILEFFIDHVKANFELENYTLDVYVTRNESVKIVDFNPWGAFTLPLLFDWEELEEAQKEEIDLRIVECRRAVRPGLKTAVPFDYLDMSSGSGWDQFLKNADQEFQQQTRDDND
BLAST of CsaV3_1G039230.1 vs. NCBI nr
Match: XP_004135634.1 (PREDICTED: cell division cycle protein 123 homolog [Cucumis sativus] >KGN66107.1 hypothetical protein Csa_1G571790 [Cucumis sativus]) HSP 1 Score: 676.0 bits (1743), Expect = 6.5e-191 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. NCBI nr
Match: XP_008450697.1 (PREDICTED: cell division cycle protein 123 homolog [Cucumis melo]) HSP 1 Score: 648.3 bits (1671), Expect = 1.4e-182 Identity = 321/332 (96.69%), Postives = 323/332 (97.29%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. NCBI nr
Match: XP_023520072.1 (cell division cycle protein 123 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 574.7 bits (1480), Expect = 2.0e-160 Identity = 286/332 (86.14%), Postives = 304/332 (91.57%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. NCBI nr
Match: XP_023001444.1 (cell division cycle protein 123 homolog [Cucurbita maxima]) HSP 1 Score: 568.5 bits (1464), Expect = 1.5e-158 Identity = 282/331 (85.20%), Postives = 302/331 (91.24%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. NCBI nr
Match: XP_022927184.1 (cell division cycle protein 123 homolog [Cucurbita moschata]) HSP 1 Score: 566.6 bits (1459), Expect = 5.5e-158 Identity = 282/331 (85.20%), Postives = 300/331 (90.63%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. TAIR10
Match: AT4G05440.1 (temperature sensing protein-related) HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-118 Identity = 203/334 (60.78%), Postives = 263/334 (78.74%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. Swiss-Prot
Match: sp|Q5BKN5|CD123_XENTR (Cell division cycle protein 123 homolog OS=Xenopus tropicalis OX=8364 GN=cdc123 PE=2 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 7.5e-58 Identity = 134/346 (38.73%), Postives = 194/346 (56.07%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. Swiss-Prot
Match: sp|Q641C9|CD123_XENLA (Cell division cycle protein 123 homolog OS=Xenopus laevis OX=8355 GN=cdc123 PE=2 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 4.9e-57 Identity = 133/348 (38.22%), Postives = 192/348 (55.17%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. Swiss-Prot
Match: sp|A7RFT2|CD123_NEMVE (Cell division cycle protein 123 homolog OS=Nematostella vectensis OX=45351 GN=cdc123 PE=3 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 9.2e-56 Identity = 120/312 (38.46%), Postives = 182/312 (58.33%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. Swiss-Prot
Match: sp|Q8CII2|CD123_MOUSE (Cell division cycle protein 123 homolog OS=Mus musculus OX=10090 GN=Cdc123 PE=1 SV=2) HSP 1 Score: 217.2 bits (552), Expect = 2.7e-55 Identity = 126/324 (38.89%), Postives = 180/324 (55.56%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. Swiss-Prot
Match: sp|Q62834|CD123_RAT (Cell division cycle protein 123 homolog OS=Rattus norvegicus OX=10116 GN=Cdc123 PE=1 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 2.7e-55 Identity = 131/344 (38.08%), Postives = 185/344 (53.78%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. TrEMBL
Match: tr|A0A0A0LZ38|A0A0A0LZ38_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G571790 PE=4 SV=1) HSP 1 Score: 676.0 bits (1743), Expect = 4.3e-191 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. TrEMBL
Match: tr|A0A1S3BPR7|A0A1S3BPR7_CUCME (cell division cycle protein 123 homolog OS=Cucumis melo OX=3656 GN=LOC103492199 PE=4 SV=1) HSP 1 Score: 648.3 bits (1671), Expect = 9.5e-183 Identity = 321/332 (96.69%), Postives = 323/332 (97.29%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. TrEMBL
Match: tr|A0A2P6QFQ9|A0A2P6QFQ9_ROSCH (Putative Cell division cycle protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0052721 PE=4 SV=1) HSP 1 Score: 506.5 bits (1303), Expect = 4.5e-140 Identity = 241/331 (72.81%), Postives = 289/331 (87.31%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. TrEMBL
Match: tr|A0A2N9G1E1|A0A2N9G1E1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24468 PE=4 SV=1) HSP 1 Score: 505.8 bits (1301), Expect = 7.6e-140 Identity = 243/331 (73.41%), Postives = 281/331 (84.89%), Query Frame = 0
BLAST of CsaV3_1G039230.1 vs. TrEMBL
Match: tr|A0A2P4NBQ4|A0A2P4NBQ4_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_08521 PE=4 SV=1) HSP 1 Score: 504.6 bits (1298), Expect = 1.7e-139 Identity = 240/331 (72.51%), Postives = 285/331 (86.10%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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