CsaV3_1G037500.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G037500.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 23429878 .. 23430042 (+)
Sequence length	165

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCAGCAAAATTTACAAAACATATCAGATGTGTCTATCCCAATGCAAAATGTCATGTCGGGAAGAGCGTTGACAATGTTGCGTCATGGTAGGCCAAAGCTTTTGCCCGATGGGGTCTACGTCGACCGGCGATCGACGTCGGAGAAGCATTGTCCGGTGTGA

mRNA sequence

ATGCATCAGCAAAATTTACAAAACATATCAGATGTGTCTATCCCAATGCAAAATGTCATGTCGGGAAGAGCGTTGACAATGTTGCGTCATGGTAGGCCAAAGCTTTTGCCCGATGGGGTCTACGTCGACCGGCGATCGACGTCGGAGAAGCATTGTCCGGTGTGA

Coding sequence (CDS)

ATGCATCAGCAAAATTTACAAAACATATCAGATGTGTCTATCCCAATGCAAAATGTCATGTCGGGAAGAGCGTTGACAATGTTGCGTCATGGTAGGCCAAAGCTTTTGCCCGATGGGGTCTACGTCGACCGGCGATCGACGTCGGAGAAGCATTGTCCGGTGTGA

Protein sequence

MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV

Homology

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BLAST of CsaV3_1G037500.1 vs. NCBI nr
Match: KGN65941.1 (hypothetical protein Csa_1G540360 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV 55
          MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV
Sbjct: 1  MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV 54

[Close]

BLAST of CsaV3_1G037500.1 vs. TrEMBL
Match: tr|A0A0A0M172|A0A0A0M172_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G540360 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.8e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV 55
          MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV
Sbjct: 1  MHQQNLQNISDVSIPMQNVMSGRALTMLRHGRPKLLPDGVYVDRRSTSEKHCPV 54

The following BLAST results are available for this feature:

BLAST of CsaV3_1G037500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65941.1	7.3e-23	100.00	hypothetical protein Csa_1G540360 [Cucumis sativus]	[more]

BLAST of CsaV3_1G037500.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G037500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G037500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M172\|A0A0A0M172_CUCSA	4.8e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G540360 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G037500	CsaV3_1G037500	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G037500.1.exon1	CsaV3_1G037500.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G037500.1.cds1	CsaV3_1G037500.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G037500.1	CsaV3_1G037500.1-protein	polypeptide