CsaV3_1G033520.1 (mRNA) Cucumber (Chinese Long) v3

NameCsaV3_1G033520.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 20622405 .. 20622686 (+)
Sequence length282
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAAGGGAAGAAAGCCGTTGAAAAACGAAAAACGAACTTTGACCGTCGATCAAAGGCGGCGGAAATCTAAACCGTCCGATCTTCCGTCAGAAGCGCGTGACTCATTTTTCTCCCGCGCCCGAGCCTTCGTTTCCCTTTCCTCGCATTTACTCTTCACTCTCTCTCCATTTCCCCCTTTGACAATTCTTATAAATATTGATCCAAATTCTTTAATTCTTCTTCAAACTCTTGGTCTTGGTCTTCATCTTCATCTTCATTCTGGGGTTTCGTTTTCTTGA

mRNA sequence

ATGACGAAGGGAAGAAAGCCGTTGAAAAACGAAAAACGAACTTTGACCGTCGATCAAAGGCGGCGGAAATCTAAACCGTCCGATCTTCCGTCAGAAGCGCGTGACTCATTTTTCTCCCGCGCCCGAGCCTTCGTTTCCCTTTCCTCGCATTTACTCTTCACTCTCTCTCCATTTCCCCCTTTGACAATTCTTATAAATATTGATCCAAATTCTTTAATTCTTCTTCAAACTCTTGGTCTTGGTCTTCATCTTCATCTTCATTCTGGGGTTTCGTTTTCTTGA

Coding sequence (CDS)

ATGACGAAGGGAAGAAAGCCGTTGAAAAACGAAAAACGAACTTTGACCGTCGATCAAAGGCGGCGGAAATCTAAACCGTCCGATCTTCCGTCAGAAGCGCGTGACTCATTTTTCTCCCGCGCCCGAGCCTTCGTTTCCCTTTCCTCGCATTTACTCTTCACTCTCTCTCCATTTCCCCCTTTGACAATTCTTATAAATATTGATCCAAATTCTTTAATTCTTCTTCAAACTCTTGGTCTTGGTCTTCATCTTCATCTTCATTCTGGGGTTTCGTTTTCTTGA

Protein sequence

MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPPLTILINIDPNSLILLQTLGLGLHLHLHSGVSFS
BLAST of CsaV3_1G033520.1 vs. NCBI nr
Match: KGN65656.1 (hypothetical protein Csa_1G479620 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPP 60
          MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPP
Sbjct: 1  MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPP 60

Query: 61 LTILINIDPNSLILLQTXXXXXXXXXXSGVSFS 94
          LTILINIDPNSLILLQTXXXXXXXXXXSGVSFS
Sbjct: 61 LTILINIDPNSLILLQTXXXXXXXXXXSGVSFS 93

BLAST of CsaV3_1G033520.1 vs. TrEMBL
Match: tr|A0A0A0M0B1|A0A0A0M0B1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479620 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-34
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0

Query: 1  MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPP 60
          MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPP
Sbjct: 1  MTKGRKPLKNEKRTLTVDQRRRKSKPSDLPSEARDSFFSRARAFVSLSSHLLFTLSPFPP 60

Query: 61 LTILINIDPNSLILLQTXXXXXXXXXXSGVSFS 94
          LTILINIDPNSLILLQTXXXXXXXXXXSGVSFS
Sbjct: 61 LTILINIDPNSLILLQTXXXXXXXXXXSGVSFS 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65656.11.2e-33100.00hypothetical protein Csa_1G479620 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0M0B1|A0A0A0M0B1_CUCSA7.9e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479620 PE=4 SV=1[more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G033520CsaV3_1G033520gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G033520.1.exon1CsaV3_1G033520.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G033520.1.cds1CsaV3_1G033520.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G033520.1CsaV3_1G033520.1-proteinpolypeptide


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33