CsaV3_1G028320.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028320.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 15370231 .. 15371089 (+)
Sequence length	312

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACACACAGCTTCCCCCCATATCTAATTCAAATCCTTCTCTTAACCATCAATTGAAATCATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGATCGAATTCTTATGCTAAAGGTTGTTTAATTGAGTTAATTGGATCGTAATGAATAAGAGAAAATTATCATTTTGTTACTTACATTAGTAGTATTTTATAAATTTAAGGAAGAGTGGATTTTGTTTCCATTTGAAATATGAGAACTAGTATTTGTTTTTCTTTTTACTTTTGTCAAAAGGCCATTTAATTTTGATCTTTATTTTTCTTGTTGTCTCTGCTTGTAAGGGAGAGGCAAATTTCATCCACATTTACAAAGACCATTACCATGGCCTTCTTAAGATTTTACTGTTTGGGTTACAACGTTTGATTACCCACATGTTCTTCGCGAATGATAATCTAAAAGAGTTAACTGAGGAATTTTGGATTTTAATTAAGCAATATTGCGAGGAAATTATATGAGTTTGGTTTCAGGGTAAAATGTAACTTTGAAGAAATCAAGTTTGGGTGCTGGCCGGTATTTTAATGACACAGGTGGTGATGTCTTTTG

mRNA sequence

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Protein sequence

MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA

Homology

[Close]

BLAST of CsaV3_1G028320.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 2.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]

BLAST of CsaV3_1G028320.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

[Close]

BLAST of CsaV3_1G028320.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

[Close]

BLAST of CsaV3_1G028320.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]

BLAST of CsaV3_1G028320.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

[Close]

BLAST of CsaV3_1G028320.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65195.1	2.0e-50	100.00	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
KGN65190.1	1.2e-13	45.63	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]
KGN65096.1	2.6e-13	40.38	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]

BLAST of CsaV3_1G028320.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTE1\|A0A0A0LTE1_CUCSA	1.3e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1	[more]
tr\|A0A0A0LTD6\|A0A0A0LTD6_CUCSA	7.7e-14	45.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
tr\|A0A0A0LYQ3\|A0A0A0LYQ3_CUCSA	1.7e-13	40.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G028320	CsaV3_1G028320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028320.1.exon1	CsaV3_1G028320.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028320.1.cds1	CsaV3_1G028320.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028320.1	CsaV3_1G028320.1-protein	polypeptide