CsaV3_1G028160.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G028160.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 15265930 .. 15266359 (-)
Sequence length238
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAAAAGAAATTTCAGTTTTCATAGCTTATTACCAAACGTTTCAGATTTCCCTACATATCTAACCTCCTTAGTCCTTCTTTCTCCCACACAAACCAAACAGGACTATTGATCCTTAGAGAGTAATTAAGAACCTTCTTATTCAATCCTTCTCTTTCACCTAATTGATCATGCTCAATTTTAGTACCAACAAATGGCAACATCAGCAACCAAGTTACCACTAGTACTTCTAGTCTGTCTTGCCATGTTAGCATCATTGGTAACGGCCCGTCCAACAACAGTAGCAGCAACAACACCATCGTCGGAGGATTTCTCTTTGTTCCCATGCATATCATTTGTTCCTAAGGCAACAAAATGTGTGATTGATGTGCTTAAGAATGCAGTTGCTCCTCATCCTTCTTGTTGTGAAGCCATCTCTAAACTTTATGATT

mRNA sequence

ATGGCAACATCAGCAACCAAGTTACCACTAGTACTTCTAGTCTGTCTTGCCATGTTAGCATCATTGGTAACGGCCCGTCCAACAACAGTAGCAGCAACAACACCATCGTCGGAGGATTTCTCTTTGTTCCCATGCATATCATTTGTTCCTAAGGCAACAAAATGTGTGATTGATGTGCTTAAGAATGCAGTTGCTCCTCATCCTTCTTGTTGTGAAGCCATCTCTAAACTTTATGATT

Coding sequence (CDS)

ATGGCAACATCAGCAACCAAGTTACCACTAGTACTTCTAGTCTGTCTTGCCATGTTAGCATCATTGGTAACGGCCCGTCCAACAACAGTAGCAGCAACAACACCATCGTCGGAGGATTTCTCTTTGTTCCCATGCATATCATTTGTTCCTAAGGCAACAAAATGTGTGATTGATGTGCTTAAGAATGCAGTTGCTCCTCATCCTTCTTGTTGTGAAGCCATCTCTAAACTTTATGATT

Protein sequence

MATSATKLPLVLLVCLAMLASLVTARPTTVAATTPSSEDFSLFPCISFVPKATKCVIDVLKNAVAPHPSCCEAISKLYDX
Homology
[Close]
BLAST of CsaV3_1G028160.1 vs. NCBI nr
Match: KGN65096.1 (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.5e-10
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 1  MATSATKLPLVLLVCLAMLASLVTARPTTVAATTPS---SEDFSLFPCISFVPKATKCVI 60
          + T   KL LV + C A+ A    A    +A T P    +ED S FPC SFVP+ATKC+I
Sbjct: 6  LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61 DVLKNAVAPHPSCCEAISKL 78
          DV K+ +A HP+CC+AISKL
Sbjct: 66 DVFKHPIAAHPTCCKAISKL 85

[Close]
BLAST of CsaV3_1G028160.1 vs. NCBI nr
Match: KGN65195.1 (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 4  SATKLPLVLLVCLAMLASLVTARPTTVAATTPSSEDFSLFPCISFVPKATKCVIDVLKNA 63
          ++ KLP++ LVC+A+LA  V  R TT      S++D +   C  F  +ATKC+IDV+KN+
Sbjct: 3  ASLKLPIIFLVCIAILALPVMTR-TTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 62

Query: 64 VAPHPSCCEAISKLYD 80
          + PHPSCC AI KL D
Sbjct: 63 MPPHPSCCRAILKLND 77

[Close]
BLAST of CsaV3_1G028160.1 vs. NCBI nr
Match: KGN65190.1 (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 0 

Query: 2  ATSATKLPLVLLVCLAMLASLVTARPTTVAATTP-----SSEDFSLFPCISFVPKATKCV 61
          + S  +L +V LVC+ +LA  VTAR T   A +P       +D S   C  F+ +AT CV
Sbjct: 8  SASTIRLAIVFLVCIVILAPSVTAR-TMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCV 67

Query: 62 IDVLKNAVAPHPSCCEAISKLYD 80
          +DV+K  VA HPSCC+AIS L D
Sbjct: 68 VDVIKLPVASHPSCCKAISDLND 89

[Close]
BLAST of CsaV3_1G028160.1 vs. TrEMBL
Match: tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0 

Query: 1  MATSATKLPLVLLVCLAMLASLVTARPTTVAATTPS---SEDFSLFPCISFVPKATKCVI 60
          + T   KL LV + C A+ A    A    +A T P    +ED S FPC SFVP+ATKC+I
Sbjct: 6  LKTPTMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMI 65

Query: 61 DVLKNAVAPHPSCCEAISKL 78
          DV K+ +A HP+CC+AISKL
Sbjct: 66 DVFKHPIAAHPTCCKAISKL 85

[Close]
BLAST of CsaV3_1G028160.1 vs. TrEMBL
Match: tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 4  SATKLPLVLLVCLAMLASLVTARPTTVAATTPSSEDFSLFPCISFVPKATKCVIDVLKNA 63
          ++ KLP++ LVC+A+LA  V  R TT      S++D +   C  F  +ATKC+IDV+KN+
Sbjct: 3  ASLKLPIIFLVCIAILALPVMTR-TTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNS 62

Query: 64 VAPHPSCCEAISKLYD 80
          + PHPSCC AI KL D
Sbjct: 63 MPPHPSCCRAILKLND 77

[Close]
BLAST of CsaV3_1G028160.1 vs. TrEMBL
Match: tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 0 

Query: 2  ATSATKLPLVLLVCLAMLASLVTARPTTVAATTP-----SSEDFSLFPCISFVPKATKCV 61
          + S  +L +V LVC+ +LA  VTAR T   A +P       +D S   C  F+ +AT CV
Sbjct: 8  SASTIRLAIVFLVCIVILAPSVTAR-TMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCV 67

Query: 62 IDVLKNAVAPHPSCCEAISKLYD 80
          +DV+K  VA HPSCC+AIS L D
Sbjct: 68 VDVIKLPVASHPSCCKAISDLND 89

The following BLAST results are available for this feature:
BLAST of CsaV3_1G028160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65096.13.5e-1050.00hypothetical protein Csa_1G212820 [Cucumis sativus][more]
KGN65195.14.3e-0848.68hypothetical protein Csa_1G263980 [Cucumis sativus][more]
KGN65190.12.4e-0645.78hypothetical protein Csa_1G263450 [Cucumis sativus][more]
BLAST of CsaV3_1G028160.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028160.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G028160.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYQ3|A0A0A0LYQ3_CUCSA2.3e-1050.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G212820 PE=4 SV=1[more]
tr|A0A0A0LTE1|A0A0A0LTE1_CUCSA2.8e-0848.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263980 PE=4 SV=1[more]
tr|A0A0A0LTD6|A0A0A0LTD6_CUCSA1.6e-0645.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G028160CsaV3_1G028160gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028160.1.cds1CsaV3_1G028160.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G028160.1.exon1CsaV3_1G028160.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G028160.1CsaV3_1G028160.1-proteinpolypeptide