CsaV3_1G028040.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028040.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Zinc finger, RING-type
Location	chr1 : 14969812 .. 14973203 (-)
Sequence length	615

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAAAGTACATAGTTGTTAGCTAATGTTATGTAACGTTATACATGTTTTATAAATTACATGATTACATGCTTATGGACCTTTACAATGATTGTTACATGTTTCAGACTATGGTGTCTGTTAATTTTGGCTATTAAGCCGTGCATCTACATGTATCGTGTCGCTCATAATCACTACTGACGGAGTGTTTGACTGAACCAACTAGTGTTGTTGAGAGAGAATTATATATTTTTTTTAAAATAAAAAAATAAAAAAAATAAAAAAGAGAAAAAAGAAAGAAAAAGAAAGAACAAAAGTAATTGGGATTTCGATTTAGGAAGGGCATCGGTCAAAAAGGAAAAGGGAATAATATGAAAGGAAGAGGAAGAGGGTTAGAAGAAGTCGAATAAATCATACATACAACAAATCAATTGTTCATCTCTTCTTTACTCATTTTCTTGAACCGTAAATCCCCAGCAATTACAATTATATCAAATCCACCTTTCTGTTTCTGCTCCCAAAAGGCCCCAAACAAAACAAAGAAACCATTCTTTCAATCCATTTCAAAGCATCATCGCCTAAATTTAACCTCCAAATTATATCAATCATCACTCTCTTCGCTTCATTTACAATCTTAATTACTATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATATGCTCTTTCTTTCTCCGATCATATAATCATGCCCGCTTTCTATTTGATAAAATGTCTCAAAGGGACGATTCATTTGTATACGTACACGGTTTTTCTTGTGTGGGGTGTCTCTCGATACGGCGAATCTTATTTTTCTTGAGCTTTGAGAATCAATGGGGTGTATGGGTTTTCTAAGTAATTGGCATTTTTGGATTTCTTTTGAAGAATGAAAATTTTGGATGGCTGGGGGAAATAAAGAATGAAGGGTAGTTTTTCTTTCCCTTTTTAAGTAATATTGGGGTTGGTTTGGGCCTCTTTAAGGATGCATTCTGATTTAGAGATGTAGTTTGATGACTAATCTAAGTCATTTGGCTACTTCATTACCTTTTGGTATGAGCTTTGGCTGGATGCATTTGGGTTGTGTTTCATTTGATTATATCAAGATCAAGATGTGTTGTTCTAGATATCAAGGTGGGGTTGAGTTAATTTTACGCTTTACAACTGATAATTAAGTGAACTCTATGTATGTTTTGTAGTTGGGGTTTCACAAGGTGGGGTTGATGGAATTCCAATTATCCTTTATTTTGAATAATGAAATGTAACATGATTTGTATGTATGTTGTAGGTATGGTTCCTTTTTCTAATCAGACGGATGTGCGGTCGGAAGAGGTCTGTACTCTTTTGTTTGCTTAAGTGAGTAGACAAAAGAATATTTTAATGTTTTCCCTTAGTAGAGAGCATTGAAGTCAGTTTTTTTTTTTTCTTTCTTTTTCCTGCTAGTGGACCACATTCTATTAAACTTACACTGCATTGAATCAACAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACCATAGCCATCAATATTGTTGGCGAGGTTCAACCAGTCAAGCAAATGCATCTGCGTCCCGTGAAAACCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTTAAATTTGCTGCTCATTACAACTCAGAGTTTCCAGACCGTATAGGTACCCTTTTTGAATGAGAGTACTTCTCACGATGGCATGCTAAGTACTTGTTCTTTAAATGTTATAAAGATATTTGAAAATTCATACCCTATATATTATTATGTGCCTCTCTCTAATCAGATGAGAAGACCTGAAAACCTAAATAATGCTAGACATAGGTGTTATGTAAATGTACACCACATCTCAAGTTAATTAAATTTCAACGTTTCTTCTAGTTGGATGATCAGACACCTTGCTTTCAAATATGTTTTGACTGTGTTTGGAGTGACTTGTGACTTATAAAAAATGTGCTTTTAAGCATTTAGAAAATCATTCCACATGGGCAATTCACATTCTTTTTTATGTAAATATATTAGATATCAGTTGCCTGTTTTTTTCTCTCATTTATTTGTAGTTTTGGTGATTTTGGTTCTTGAATTTTGAATAAAGAACAGTCAATTGTTTGGCACGAAACACTTATTTTATGAAGGAAGACGTCCTAAATAAACACATCTTAGGTATTAGAGACCTGAGCCAAATTAAATCCTAATGATCATCTACAAAATGATTAATGAAGATGAAGTATATAACAATATATTAGCCTGTCATCCCACACCATTTGAAGCTCTCGCTCCAGTGGGTGAAGATAGTTGCTTCTTCTACATTGATAATGTTGTTCTTCTGTATTAACTAAATTTTTGCTTCAATTTTAGAGAGCATTGAGAGCACCTTTAGGGAGCCAGAAAGGATAAGGTACAATTCCTTGGGGAAGGATGCTTTTTCATCTCATGTAATGAGAATGATATGTGGTATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACAAAACCGCCTCCTGAAGTCGATGATTCAAAAAGAGGAGAACAAGAATGAGTGGAGTTGTACATATGTTATCACATAGCACCAACATAGGAAATAGAGAACTTGGTTCTGACTTGAATGGGCATATCAAAAAGTGGAGTTTTTGCATCCTCGATTGATTTTCCAAACTAATCAATCACTGTTTTCTCTGGATGGCTGTGATTTAGAAACAGAAAATAGTAACTTTGAATCACAACCATTCAGAAAATAGCGATAATGGGTCGAAAGGTAACAAGGATTTGCCCTCCTTAGATTTCTTTTTGTGTAGAGCTAGATTGACATATGGAAGTCCTTTGGTACCTTATGGAAACATTGTTATCTTGCATAGCAGCAGAGGATTTTAGTCGAGACATCTTCATGGTATTTTGTACTTTTTATATCAATGTCTAAAATAGTATATTTTAGAAAGTATCGATGTTAGCAAAGTTATAATGGAAGTAGATTTTTGTGTTTTCCTTGTAGAAAAAATGATGGTAATGAGTAATCTATTTCAAAGGTTGTGTTTGTTTGATTTGGCACTGACATAAAAGTCTGTAGGTGAAGCAGTGATTGAAAATTAGGAGAGATTCAAGAAATGTATAATCAACACGAGCTTCATAAGTTTACCATGGATATACTTTTGTTTTTTTTAGTATTTGTATTCCGTTGGAGTTAATTTTAATTTTAATCTTACTAACGAAGAGTGTTTGAAAGACCTTGAATTAAATTAAAAA

mRNA sequence

ATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATGGTTCCTTTTTCTAATCAGACGGATGTGCGGTCGGAAGAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACCATAGCCATCAATATTGTTGGCGAGGTTCAACCAGTCAAGCAAATGCATCTGCGTCCCGTGAAAACCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTTAAATTTGCTGCTCATTACAACTCAGAGTTTCCAGACCGTATAGAGAGCATTGAGAGCACCTTTAGGGAGCCAGAAAGGATAAGGTACAATTCCTTGGGGAAGGATGCTTTTTCATCTCATGTAATGAGAATGATATGTGGTATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACAAAACCGCCTCCTGAAGTCGATGATTCAAAAAGAGGAGAACAAGAATGA

Coding sequence (CDS)

ATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATGGTTCCTTTTTCTAATCAGACGGATGTGCGGTCGGAAGAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACCATAGCCATCAATATTGTTGGCGAGGTTCAACCAGTCAAGCAAATGCATCTGCGTCCCGTGAAAACCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTTAAATTTGCTGCTCATTACAACTCAGAGTTTCCAGACCGTATAGAGAGCATTGAGAGCACCTTTAGGGAGCCAGAAAGGATAAGGTACAATTCCTTGGGGAAGGATGCTTTTTCATCTCATGTAATGAGAATGATATGTGGTATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACAAAACCGCCTCCTGAAGTCGATGATTCAAAAAGAGGAGAACAAGAATGA

Protein sequence

MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQE

Homology

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BLAST of CsaV3_1G028040.1 vs. NCBI nr
Match: XP_004150507.1 (PREDICTED: uncharacterized protein LOC101222911 [Cucumis sativus] >KGN65100.1 hypothetical protein Csa_1G217850 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 7.9e-115
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD
Sbjct: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTKPPPEVDDSKRGEQE
Sbjct: 181 SDPPCPLCTKPPPEVDDSKRGEQE 204

[Close]

BLAST of CsaV3_1G028040.1 vs. NCBI nr
Match: XP_008443927.1 (PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo])

HSP 1 Score: 396.7 bits (1018), Expect = 4.7e-107
Identity = 194/204 (95.10%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHH+SHQYC RG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANAS SRENRVRTVLEERPAFKFAAH NSEFPDRIESIESTFR PERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           A SSH+MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTK PPEVDDSK GEQE
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of CsaV3_1G028040.1 vs. NCBI nr
Match: XP_016899782.1 (PREDICTED: uncharacterized protein LOC103487402 isoform X1 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 4.5e-94
Identity = 174/184 (94.57%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 21  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLE 80
           GMVPFSNQTDVRSEEDTSLARPIFMKRSRHH+SHQYC RGSTSQANAS SRENRVRTVLE
Sbjct: 22  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLE 81

Query: 81  ERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRR 140
           ERPAFKFAAH NSEFPDRIESIESTFR PERIRYNSLGKDA SSH+MRM+CGICQKLMRR
Sbjct: 82  ERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRR 141

Query: 141 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKR 200
           KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTK PPEVDDSK 
Sbjct: 142 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKG 201

Query: 201 GEQE 205
           GEQE
Sbjct: 202 GEQE 205

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BLAST of CsaV3_1G028040.1 vs. NCBI nr
Match: XP_022134599.1 (uncharacterized protein LOC111006826 [Momordica charantia])

HSP 1 Score: 341.3 bits (874), Expect = 2.3e-90
Identity = 169/203 (83.25%), Postives = 182/203 (89.66%), Query Frame = 0


Query: 1   MGKRKR-GSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWR 60
           MGKRKR  SD TH DPPLHLSG+VPFSNQ DV SEED SLARP+FMKRSRH +SHQYC R
Sbjct: 1   MGKRKRASSDHTHPDPPLHLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSTSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGK 120
           GSTSQANAS SRENRVRTVLEERPAFKFAAH NSEFP+ IESIE+TF  PERIRY+SLGK
Sbjct: 61  GSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGK 120

Query: 121 DAFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVED 180
           DA SSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLE RS VED
Sbjct: 121 DAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVED 180

Query: 181 RSDPPCPLCTKPPPEVDDSKRGE 203
           RSDPPCPLCT+P  ++DDSK G+
Sbjct: 181 RSDPPCPLCTEPSTKIDDSKGGQ 203

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BLAST of CsaV3_1G028040.1 vs. NCBI nr
Match: XP_022961020.1 (uncharacterized protein LOC111461650 isoform X2 [Cucurbita moschata])

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 165/202 (81.68%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRK GSDQTHHD P HLSG+VPFSNQ DVRSEED SLARPIFMKRSRH +SHQYC RG
Sbjct: 7   MGKRKPGSDQTHHDRPHHLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRG 66

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STS+ANAS SRENRVRT+LE+RPAFKFAAH NSEFPD IES ESTF  PERIRYNSLGKD
Sbjct: 67  STSEANASTSRENRVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKD 126

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
             SSH  +++CGICQKLMRRKLCFLGNTLSSSELP+AAVLVCGHVYHA+CLEN S+VEDR
Sbjct: 127 TISSHGRKIVCGICQKLMRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDR 186

Query: 181 SDPPCPLCTKPPPEVDDSKRGE 203
           SDP CPLC +PP +VDDS   E
Sbjct: 187 SDPGCPLCMEPPAKVDDSTEQE 208

[Close]

BLAST of CsaV3_1G028040.1 vs. TAIR10
Match: AT1G75400.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 118 GKDAFS---SHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENR 177
           G   FS   S V + +CG C KL+  +     +++++ ELP+AAVL CGHVYHAECLE  
Sbjct: 265 GSSRFSFSPSVVDQQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETM 324

Query: 178 SSVEDRSDPPCPLCT 190
           ++  ++ DP CP+CT
Sbjct: 325 TTDIEKYDPACPICT 334

[Close]

BLAST of CsaV3_1G028040.1 vs. TAIR10
Match: AT1G19680.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-11
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 123 SSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSD 182
           S  V +  CG C KL+  +     + ++  +LP+ AVL CGHVYHA CLE  ++  ++ D
Sbjct: 265 SPSVDQQTCGRCSKLLTER-----SPVARFDLPIPAVLACGHVYHAACLETMTNETEKYD 324

Query: 183 PPCPLCTK 191
           P CP+CT+
Sbjct: 325 PTCPICTE 327

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BLAST of CsaV3_1G028040.1 vs. TAIR10
Match: AT2G21500.2 (RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 131 CGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCT 190
           CG C + L  + L       +++EL VAA+L CGHVYH+ECLE  +   D+ DP CP+CT
Sbjct: 251 CGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of CsaV3_1G028040.1 vs. TAIR10
Match: AT4G39140.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 117 LGKDAFSSHVMRM------ICGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAE 176
           L +D    H  RM       CG C + L  + L        ++EL V+A+L CGHVYH E
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 177 CLENRSSVEDRSDPPCPLCT 190
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of CsaV3_1G028040.1 vs. TAIR10
Match: AT1G14180.1 (RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08
Identity = 33/108 (30.56%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 88  AAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGN 147
           A  ++S  P  I+S++    EP     N+  K    +      CG+C + + +K  +   
Sbjct: 144 ACSWSSGTPSSIDSVD--VPEPVLDWNNNSTKAQQVAASSTFKCGLCNRYLSQKSPWGSR 203

Query: 148 TL-SSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPE 195
           ++  + ++PV  VL C HV+H ECL+  +    R+DP CP+CTK   E
Sbjct: 204 SIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICTKQEGE 249

[Close]

BLAST of CsaV3_1G028040.1 vs. TrEMBL
Match: tr|A0A0A0LT71|A0A0A0LT71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G217850 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 5.2e-115
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD
Sbjct: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTKPPPEVDDSKRGEQE
Sbjct: 181 SDPPCPLCTKPPPEVDDSKRGEQE 204

[Close]

BLAST of CsaV3_1G028040.1 vs. TrEMBL
Match: tr|A0A1S3B956|A0A1S3B956_CUCME (uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 3.1e-107
Identity = 194/204 (95.10%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHH+SHQYC RG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANAS SRENRVRTVLEERPAFKFAAH NSEFPDRIESIESTFR PERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           A SSH+MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTK PPEVDDSK GEQE
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of CsaV3_1G028040.1 vs. TrEMBL
Match: tr|A0A1S4DUW7|A0A1S4DUW7_CUCME (uncharacterized protein LOC103487402 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 3.0e-94
Identity = 174/184 (94.57%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 21  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLE 80
           GMVPFSNQTDVRSEEDTSLARPIFMKRSRHH+SHQYC RGSTSQANAS SRENRVRTVLE
Sbjct: 22  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLE 81

Query: 81  ERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRR 140
           ERPAFKFAAH NSEFPDRIESIESTFR PERIRYNSLGKDA SSH+MRM+CGICQKLMRR
Sbjct: 82  ERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRR 141

Query: 141 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKR 200
           KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTK PPEVDDSK 
Sbjct: 142 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKG 201

Query: 201 GEQE 205
           GEQE
Sbjct: 202 GEQE 205

[Close]

BLAST of CsaV3_1G028040.1 vs. TrEMBL
Match: tr|A0A2P4LY27|A0A2P4LY27_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15707 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 105/236 (44.49%), Postives = 133/236 (56.36%), Query Frame = 0


Query: 1   MGKRKRGSDQTHHDPPLHL----SGMVPFSNQTDVRSEEDT------------------- 60
           MGKRKR  D  +  PP       SGM   S +T + + + +                   
Sbjct: 1   MGKRKRIPDHINTQPPSDTMPCSSGMELMSEETPLHAVDSSALNPLSSVLDLTDSSMKLL 60

Query: 61  ----------SLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAFKF 120
                     +L R IF+KRSRHH+SHQY  R S + AN S SR  +V ++ +ER +FK 
Sbjct: 61  NAHPTAAHHQNLGRSIFLKRSRHHYSHQYSRRNSANHANPSTSR-GKVASLRDERLSFKL 120

Query: 121 AAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGN 180
           A   NS+     E  E+ F  PERIR +S+  DA SS V++M CG CQK +RRK  FLG+
Sbjct: 121 ATQCNSQIGHHSEFRENMFCRPERIRSSSMVMDAISSDVVKMECGTCQKQLRRKPYFLGS 180

Query: 181 TLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQ 204
           TLSS EL V AVLVCGHVYHAECLE R+ +ED+ DPPCPLC       DD  RG++
Sbjct: 181 TLSSGELSVVAVLVCGHVYHAECLEQRTCLEDKRDPPCPLCLNLFSN-DDESRGQK 234

[Close]

BLAST of CsaV3_1G028040.1 vs. TrEMBL
Match: tr|A0A2N9F746|A0A2N9F746_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14628 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 99/198 (50.00%), Postives = 119/198 (60.10%), Query Frame = 0


Query: 7   GSDQTHHDPPLHL---SGMVPFSNQTDV-------------RSEEDTSLARPIFMKRSRH 66
           G +    + PLH    S + P S+  D+              +    SL R IF+KRSRH
Sbjct: 6   GMEFLAEEKPLHAVDSSALNPLSSVLDITDSSIRLLNAHPTAAHHHQSLGRSIFLKRSRH 65

Query: 67  HHSHQYCWRGSTSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPE 126
           H+SHQY  R S +  NAS SR     T  +ER +FK A   NS+     E+ ES F  PE
Sbjct: 66  HYSHQYSRRNSANHPNASTSRGKGAST-RDERLSFKLATQCNSQTGHHSENRESVFCRPE 125

Query: 127 RIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAEC 186
           RIR +SL  DA SS V++M+CG CQK +RRK  FLG+TLSS EL V AVLVCGHVYHAEC
Sbjct: 126 RIRSSSLVMDAMSSDVVKMVCGTCQKPLRRKPYFLGSTLSSGELSVVAVLVCGHVYHAEC 185

Query: 187 LENRSSVEDRSDPPCPLC 189
           LE R+ VEDR DP CPLC
Sbjct: 186 LEQRTCVEDRRDPTCPLC 202

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150507.1	7.9e-115	100.00	PREDICTED: uncharacterized protein LOC101222911 [Cucumis sativus] >KGN65100.1 hy...	[more]
XP_008443927.1	4.7e-107	95.10	PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo]	[more]
XP_016899782.1	4.5e-94	94.57	PREDICTED: uncharacterized protein LOC103487402 isoform X1 [Cucumis melo]	[more]
XP_022134599.1	2.3e-90	83.25	uncharacterized protein LOC111006826 [Momordica charantia]	[more]
XP_022961020.1	1.2e-89	81.68	uncharacterized protein LOC111461650 isoform X2 [Cucurbita moschata]	[more]

BLAST of CsaV3_1G028040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75400.1	2.1e-13	45.33	RING/U-box superfamily protein	[more]
AT1G19680.1	7.6e-11	41.18	RING/U-box superfamily protein	[more]
AT2G21500.2	1.3e-10	46.67	RING/U-box superfamily protein	[more]
AT4G39140.1	2.2e-10	40.00	RING/U-box superfamily protein	[more]
AT1G14180.1	1.6e-08	30.56	RING/U-box superfamily protein	[more]

BLAST of CsaV3_1G028040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT71\|A0A0A0LT71_CUCSA	5.2e-115	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G217850 PE=4 SV=1	[more]
tr\|A0A1S3B956\|A0A1S3B956_CUCME	3.1e-107	95.10	uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DUW7\|A0A1S4DUW7_CUCME	3.0e-94	94.57	uncharacterized protein LOC103487402 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P4LY27\|A0A2P4LY27_QUESU	9.4e-40	44.49	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15707 PE=4 SV=1	[more]
tr\|A0A2N9F746\|A0A2N9F746_FAGSY	1.2e-39	50.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14628 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR027370	Znf-RING_LisH
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G028040	CsaV3_1G028040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028040.1	CsaV3_1G028040.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028040.1.cds4	CsaV3_1G028040.1.cds4	CDS
CsaV3_1G028040.1.cds3	CsaV3_1G028040.1.cds3	CDS
CsaV3_1G028040.1.cds2	CsaV3_1G028040.1.cds2	CDS
CsaV3_1G028040.1.cds1	CsaV3_1G028040.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028040.1.exon4	CsaV3_1G028040.1.exon4	exon
CsaV3_1G028040.1.exon3	CsaV3_1G028040.1.exon3	exon
CsaV3_1G028040.1.exon2	CsaV3_1G028040.1.exon2	exon
CsaV3_1G028040.1.exon1	CsaV3_1G028040.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 131..188 e-value: 1.9E-4 score: 30.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 131..189 score: 10.291
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 131..185 e-value: 1.1E-5 score: 25.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 118..202 e-value: 1.7E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..204
None	No IPR available	PANTHER	PTHR31150	FAMILY NOT NAMED	coord: 27..199
None	No IPR available	PANTHER	PTHR31150:SF6	SUBFAMILY NOT NAMED	coord: 27..199
None	No IPR available	CDD	cd16448	RING-H2	coord: 131..188 e-value: 2.21527E-4 score: 36.2759
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 130..193