CsaV3_1G028010.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028010.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	EamA-like transporter family
Location	chr1 : 14940602 .. 14940934 (+)
Sequence length	222

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTGTTTGGACAAGTCCACTTGTAGCTGCTTTAGGTGCATCTCTAACTATACCACTTGCCATGGTAGGAGATATGGTCCTCCATGGTCGTCATTATTCTTTGGTTTACATTTTTGGATCCATTCAAGTGAGTAATAATATTTTTTTTTAGAGATCGATGTTTTCATTACTTATACACACTATCCTTATCAATTTAGTCAATTTATGAAGTGATAATATGTAATAATTGTGCTTTTAGGTATTTTTGGGATTTATAATTGCAAACCTTTCGGATTGGATATCTCCAAAGTTGAAGTTGAGGAAAAAGTTCTTGAATGAAGGGAAGTAA

mRNA sequence

ATGGGTGTTGTTTGGACAAGTCCACTTGTAGCTGCTTTAGGTGCATCTCTAACTATACCACTTGCCATGGTAGGAGATATGGTCCTCCATGGTCGTCATTATTCTTTGGTTTACATTTTTGGATCCATTCAAGTATTTTTGGGATTTATAATTGCAAACCTTTCGGATTGGATATCTCCAAAGTTGAAGTTGAGGAAAAAGTTCTTGAATGAAGGGAAGTAA

Coding sequence (CDS)

ATGGGTGTTGTTTGGACAAGTCCACTTGTAGCTGCTTTAGGTGCATCTCTAACTATACCACTTGCCATGGTAGGAGATATGGTCCTCCATGGTCGTCATTATTCTTTGGTTTACATTTTTGGATCCATTCAAGTATTTTTGGGATTTATAATTGCAAACCTTTCGGATTGGATATCTCCAAAGTTGAAGTTGAGGAAAAAGTTCTTGAATGAAGGGAAGTAA

Protein sequence

MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISPKLKLRKKFLNEGK

Homology

[Close]

BLAST of CsaV3_1G028010.1 vs. NCBI nr
Match: KGN65102.1 (hypothetical protein Csa_1G220860 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP
Sbjct: 183 MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 242

Query: 61  KLKLRKKFLNEGK 74
           KLKLRKKFLNEGK
Sbjct: 243 KLKLRKKFLNEGK 255

[Close]

BLAST of CsaV3_1G028010.1 vs. NCBI nr
Match: XP_011648470.1 (PREDICTED: uncharacterized vacuolar membrane protein YML018C-like [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP
Sbjct: 203 MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 262

Query: 61  KLKLRKKFLNEGK 74
           KLKLRKKFLNEGK
Sbjct: 263 KLKLRKKFLNEGK 275

[Close]

BLAST of CsaV3_1G028010.1 vs. NCBI nr
Match: XP_008444043.1 (PREDICTED: uncharacterized transporter C405.03c-like [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 9.1e-29
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASLTIPLAMVGDM+LHGRHYSLVYIFGSIQVFLGFIIAN SDWISP
Sbjct: 345 MGVVWTSPLVAALGASLTIPLAMVGDMILHGRHYSLVYIFGSIQVFLGFIIANFSDWISP 404

Query: 61  KLKLRKKFLNEGK 74
           KL LRKKF N  K
Sbjct: 405 KLILRKKFFNRAK 417

[Close]

BLAST of CsaV3_1G028010.1 vs. NCBI nr
Match: XP_022134812.1 (uncharacterized transporter C405.03c-like [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 9.1e-29
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASLTIPLAM+GDMVLHGRHYSLVYIFGS+QVFLGF+IANLSDWISP
Sbjct: 341 MGVVWTSPLVAALGASLTIPLAMLGDMVLHGRHYSLVYIFGSLQVFLGFMIANLSDWISP 400

Query: 61  KLKLRKKFLNEG 73
           KLKLR +F N+G
Sbjct: 401 KLKLRSRFFNDG 412

[Close]

BLAST of CsaV3_1G028010.1 vs. NCBI nr
Match: XP_008444044.1 (PREDICTED: uncharacterized transporter C405.03c-like [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASL+IPLAM+GDMVLHGRHYSLVYIFGSIQVFLGFIIAN SDWIS 
Sbjct: 281 MGVVWTSPLVAALGASLSIPLAMIGDMVLHGRHYSLVYIFGSIQVFLGFIIANFSDWISL 340

Query: 61  KLKLRKKFLNEGK 74
           KLKLRKKF NE K
Sbjct: 341 KLKLRKKFFNEAK 353

[Close]

BLAST of CsaV3_1G028010.1 vs. TAIR10
Match: AT4G32140.1 (EamA-like transporter family)

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-20
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           + VVWT+PLVA LG SLTIPLAMV DM++HGRHYS +YI GS QVF GF+IAN+SD  S 
Sbjct: 331 LSVVWTTPLVATLGMSLTIPLAMVADMMIHGRHYSAIYILGSTQVFAGFVIANISDLFSK 390

Query: 61  KLKL 65
           KL L
Sbjct: 391 KLGL 394

[Close]

BLAST of CsaV3_1G028010.1 vs. Swiss-Prot
Match: sp|O94654|YGF3_SCHPO (Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC405.03c PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIAN 54
           + ++ TSPL+  +G SL+IPLA+  D++L G + +   I GS+ VF GFI+ N
Sbjct: 282 IAMLMTSPLLVTVGMSLSIPLALFFDILLKGHYLNFSLILGSLLVFAGFIVVN 334

[Close]

BLAST of CsaV3_1G028010.1 vs. Swiss-Prot
Match: sp|Q03730|YMB8_YEAST (Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YML018C PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.3e-04
Identity = 22/50 (44.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 6   TSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLS 56
           TSPL   +G S+TIPLAM GD++   +  S +Y+FG+  +   F I N S
Sbjct: 319 TSPLTVTVGLSITIPLAMFGDVIFKHKTMSALYLFGATLILGSFFIINKS 368

[Close]

BLAST of CsaV3_1G028010.1 vs. TrEMBL
Match: tr|A0A0A0LWA1|A0A0A0LWA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G220860 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.4e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP
Sbjct: 183 MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 242

Query: 61  KLKLRKKFLNEGK 74
           KLKLRKKFLNEGK
Sbjct: 243 KLKLRKKFLNEGK 255

[Close]

BLAST of CsaV3_1G028010.1 vs. TrEMBL
Match: tr|A0A1S3B906|A0A1S3B906_CUCME (uncharacterized transporter C405.03c-like OS=Cucumis melo OX=3656 GN=LOC103487494 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-29
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASLTIPLAMVGDM+LHGRHYSLVYIFGSIQVFLGFIIAN SDWISP
Sbjct: 345 MGVVWTSPLVAALGASLTIPLAMVGDMILHGRHYSLVYIFGSIQVFLGFIIANFSDWISP 404

Query: 61  KLKLRKKFLNEGK 74
           KL LRKKF N  K
Sbjct: 405 KLILRKKFFNRAK 417

[Close]

BLAST of CsaV3_1G028010.1 vs. TrEMBL
Match: tr|A0A1S3B9F8|A0A1S3B9F8_CUCME (uncharacterized transporter C405.03c-like OS=Cucumis melo OX=3656 GN=LOC103487495 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.9e-29
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           MGVVWTSPLVAALGASL+IPLAM+GDMVLHGRHYSLVYIFGSIQVFLGFIIAN SDWIS 
Sbjct: 281 MGVVWTSPLVAALGASLSIPLAMIGDMVLHGRHYSLVYIFGSIQVFLGFIIANFSDWISL 340

Query: 61  KLKLRKKFLNEGK 74
           KLKLRKKF NE K
Sbjct: 341 KLKLRKKFFNEAK 353

[Close]

BLAST of CsaV3_1G028010.1 vs. TrEMBL
Match: tr|A0A2P4LXY4|A0A2P4LXY4_QUESU (Putative vacuolar membrane protein OS=Quercus suber OX=58331 GN=CFP56_15713 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-21
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           +GVVWTSPLV ALGASLTIPLAM+ DMV+HGRHYS +YI GSI VFLGF+IANLSDW SP
Sbjct: 329 LGVVWTSPLVTALGASLTIPLAMLEDMVIHGRHYSAIYILGSILVFLGFVIANLSDWFSP 388

Query: 61  KLKLRKKFLNEGK 74
             KL  +FLN  K
Sbjct: 389 --KLGSQFLNSLK 399

[Close]

BLAST of CsaV3_1G028010.1 vs. TrEMBL
Match: tr|A0A2I4GSI5|A0A2I4GSI5_9ROSI (uncharacterized transporter C405.03c-like OS=Juglans regia OX=51240 GN=LOC109010461 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-20
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1   MGVVWTSPLVAALGASLTIPLAMVGDMVLHGRHYSLVYIFGSIQVFLGFIIANLSDWISP 60
           +GVVWT+PLVAALGASLTIPLAM+ DMV+HGRHYS++YI GS+QV LGF+IANLSDW SP
Sbjct: 334 LGVVWTTPLVAALGASLTIPLAMLEDMVIHGRHYSIIYILGSLQVLLGFVIANLSDWFSP 393

Query: 61  KLKL 65
            L L
Sbjct: 394 TLGL 397

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65102.1	5.2e-32	100.00	hypothetical protein Csa_1G220860 [Cucumis sativus]	[more]
XP_011648470.1	5.2e-32	100.00	PREDICTED: uncharacterized vacuolar membrane protein YML018C-like [Cucumis sativ...	[more]
XP_008444043.1	9.1e-29	91.78	PREDICTED: uncharacterized transporter C405.03c-like [Cucumis melo]	[more]
XP_022134812.1	9.1e-29	90.28	uncharacterized transporter C405.03c-like [Momordica charantia]	[more]
XP_008444044.1	1.2e-28	91.78	PREDICTED: uncharacterized transporter C405.03c-like [Cucumis melo]	[more]

BLAST of CsaV3_1G028010.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32140.1	7.2e-20	70.31	EamA-like transporter family	[more]

BLAST of CsaV3_1G028010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O94654\|YGF3_SCHPO	1.1e-04	43.40	Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe (strain 972 / ...	[more]
sp\|Q03730\|YMB8_YEAST	5.3e-04	44.00	Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (s...	[more]

BLAST of CsaV3_1G028010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWA1\|A0A0A0LWA1_CUCSA	3.4e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G220860 PE=4 SV=1	[more]
tr\|A0A1S3B906\|A0A1S3B906_CUCME	6.0e-29	91.78	uncharacterized transporter C405.03c-like OS=Cucumis melo OX=3656 GN=LOC10348749...	[more]
tr\|A0A1S3B9F8\|A0A1S3B9F8_CUCME	7.9e-29	91.78	uncharacterized transporter C405.03c-like OS=Cucumis melo OX=3656 GN=LOC10348749...	[more]
tr\|A0A2P4LXY4\|A0A2P4LXY4_QUESU	6.0e-21	75.34	Putative vacuolar membrane protein OS=Quercus suber OX=58331 GN=CFP56_15713 PE=4...	[more]
tr\|A0A2I4GSI5\|A0A2I4GSI5_9ROSI	2.3e-20	78.13	uncharacterized transporter C405.03c-like OS=Juglans regia OX=51240 GN=LOC109010...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G028010	CsaV3_1G028010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028010.1.exon1	CsaV3_1G028010.1.exon1	exon
CsaV3_1G028010.1.exon2	CsaV3_1G028010.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028010.1.cds1	CsaV3_1G028010.1.cds1	CDS
CsaV3_1G028010.1.cds2	CsaV3_1G028010.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G028010.1	CsaV3_1G028010.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23051:SF7	SUBFAMILY NOT NAMED	coord: 2..64
None	No IPR available	PANTHER	PTHR23051	SOLUTE CARRIER FAMILY 35, MEMBER F5	coord: 2..64