CsaV3_1G027820.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G027820.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 14707418 .. 14707863 (-)
Sequence length	446

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGGCGCCTTACGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATCCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGCCGGCATGGCGGCAGTTGCGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTA

mRNA sequence

ATGAAAATGGCGCCTTACGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATCCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGCCGGCATGGCGGCAGTTGCGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTA

Coding sequence (CDS)

ATGAAAATGGCGCCTTACGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATCCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGCCGGCATGGCGGCAGTTGCGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTA

Protein sequence

MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYFSGTRRTRRHGGSCGGDWLWSFASNGVX

Homology

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BLAST of CsaV3_1G027820.1 vs. NCBI nr
Match: XP_011651408.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN57843.1 hypothetical protein Csa_3G346900 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 7.7e-35
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120
           XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 121 YFSGTRRTR 130
           YFSGTRRTR
Sbjct: 121 YFSGTRRTR 129

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BLAST of CsaV3_1G027820.1 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 90/125 (72.00%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXXXX 62
           MAP AAI LS SFL   L LANSQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q      
Sbjct: 1   MAPSAAIPLSLSFLFXXLHLANSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF----- 60

Query: 63  XXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYYF 122
             XXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXX  NLY+IDANN WYYF
Sbjct: 61  -PXXXXXXXXXCKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYF 117

Query: 123 SGTRR 128
           SGT R
Sbjct: 121 SGTTR 117

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BLAST of CsaV3_1G027820.1 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 91/129 (70.54%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKMAP AAI LS S     L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q  XX
Sbjct: 1   MKMAPSAAIPLSLSXXXXXLHLADSQPFSP--VDPQDPNSEIKCGSCPCSNPCVKQFPXX 60

Query: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120
           XXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXX  NLY+IDANN WY
Sbjct: 61  XXXXXXXN-----CKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWY 120

Query: 121 YFSGTRRTR 130
           YFSGT R R
Sbjct: 121 YFSGTTRNR 122

[Close]

BLAST of CsaV3_1G027820.1 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 53/123 (43.09%), Postives = 60/123 (48.78%), Query Frame = 0


Query: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGS-CPCSNPCIQQLSXXX 62
           MAP AAI LS       LLL+  QTS PI   P +PDAEI CGS  PCSNP ++QL    
Sbjct: 1   MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDAEINCGSTTPCSNPSVRQLQPSP 60

Query: 63  XXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYY 122
            XXXXXXXXXX   T+                               +LY+ D  N WYY
Sbjct: 61  PXXXXXXXXXXFVYTMG---------------------------VPSDLYQNDEKNRWYY 89

Query: 123 FSG 125
           FSG
Sbjct: 121 FSG 89

[Close]

BLAST of CsaV3_1G027820.1 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120
           XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 121 YFSGTRRTR 130
           YFSGTRRTR
Sbjct: 121 YFSGTRRTR 129

The following BLAST results are available for this feature:

BLAST of CsaV3_1G027820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651408.1	7.7e-35	100.00	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN578...	[more]
XP_022984145.1	2.2e-13	72.00	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023528316.1	2.8e-13	70.54	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_023525793.1	1.8e-04	43.09	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_1G027820.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G027820.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G027820.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	5.1e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G027820	CsaV3_1G027820	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G027820.1.cds1	CsaV3_1G027820.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G027820.1.exon1	CsaV3_1G027820.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G027820.1	CsaV3_1G027820.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..105
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 26..124
None	No IPR available	PANTHER	PTHR35094:SF2	SUBFAMILY NOT NAMED	coord: 26..124