CsaV3_1G023070.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G023070.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 13421203 .. 13422844 (-)
Sequence length345
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTGAACTATGTTCCGTTATATAATTACCTAAAATACTTTATTTCTTGTTTAAGTCAATTGAACTATGTTCCGTTATATAATTACCTAAAATGCTTTATTTCTTTATTGACCCTGCATTAGACGTCTATTGTATGTGCGTATAAACTTAATTTTTGCAGAAAGAGAGGTTAACACATGGAATATGCATATGCTTATGCTTGCTCATATAAATGTAGAGTGGTCGGACAGCATGATCAAACGCATCATATGCTTACTATTGCTCCTCTACGTTGTCATCAGCTGGGGTTACATTGTGGCTTTTTGAGTGATTAAATTGCAGCAAAGCAATTAATTGTCTTGATAAGATGTGTATTGAAGTAATTCATTTCTGGACTTTTAATCATGATAAAGATATCATGTGGAAGTATTGTTTATGTTCGTTGATTGAATACAATACATTTTGTTTTCTATCCTCTGCTATGTATTGGAAAGTATTAATGTACTGGATCTACTCGCATTTACAAGCCTTCTCTACAGGTCTTTAAATAGACTGATTATGCAGTGATAACCGGAGCTAACTTCCTAACCAACCAATGGTTAGTTGCTGTTTAAATAATAATAGAGGATCAGGAAAAGCAAAGTCCTCTACACTGTGCCTGTAAAATGAAGGATTCAACTGTGTGTAAATTGAATAAACAGTAAGAACCCGGCCAGTAGAATATTCTTGTTATTTAAATTAACCCATTCTTCAAAGACCATGTATAAATCTAGTTGTCTTCCAGAGTTTAATTCAATTGACACTTGTATAGACGGAGAACTAAGAGGTTCTAAGTTCAAATCCTCCACCCTAATTTTGTACGTAAATATATATACATATATATATCAACCCTGTTCATGCCTCTATGTTGAACAGTTGTATTCAAGAGTAACATTTTCTTTAGTCATTCCATAGGGTTGTCATGTATTGGTATATTAATATCAATTTATTCGTTTATTATAGCTATTGTTTATTTAGACAGCCCATTGGCCATAGCTTATTGAGATTTCATTTGTTTTCAGACGACAGGTATTTCAGCCACAAGACCTAGAGGCGGTTAGATGAACTTTTACAACCTTGCAAGTTTGCTAGTTGGAGATTTGGCAGGATACAGCTTAGCGAAATGTAATGGTATTATTGCTGGTGGTATAAAGTTGAGGTTGGGTATGGCTACTGAACTAGCAATTACACAGTCAAGGAATGGTGTGAAGACATTTTTTCATTTGCTTGCACTTGAAATTCTCCAGTCTCCATTCTCCATTCTCCATTCCCACATTTTTCAATTTGTGTACGAGTGCTTTTCTTATTTTCATGAGAGGAACTCGATTAATTTATTTCCCACGATGGAATTTAGAGGGGGAAAAGAAAAAGAATATCTATTTCAGACTTTCAGCGGCCTATTATAATTCATTTGGTGGTCTGCATCTTCTTTACAGCTTATATCTCGTAATTATTAAGTTACAGTGAAAACGATCAAGTATTTCCAAACTAGTCATGTTTATAAGCATAGGGATGTTTCATCTGGGGTTACATGCTCTGAAAACCCGACACTAAAATTCTTAATTATTATTGTCTGAGGAGGAATATCTTTCTCTTCTTTTCTAGTTCTTGGGGAAGTAAAAT

mRNA sequence

ATGAACTTTTACAACCTTGCAAGTTTGCTAGTTGGAGATTTGGCAGGATACAGCTTAGCGAAATGTAATGGTATTATTGCTGGTGGTATAAAGTTGAGGTTGGGTATGGCTACTGAACTAGCAATTACACAGTCAAGGAATGGTGTGAAGACATTTTTTCATTTGCTTGCACTTGAAATTCTCCAGTCTCCATTCTCCATTCTCCATTCCCACATTTTTCAATTTGTGTACGAGTGCTTTTCTTATTTTCATGAGAGGAACTCGATTAATTTATTTCCCACGATGGAATTTAGAGGGGGAAAAGAAAAAGAATATCTATTTCAGACTTTCAGCGGCCTATTATAA

Coding sequence (CDS)

ATGAACTTTTACAACCTTGCAAGTTTGCTAGTTGGAGATTTGGCAGGATACAGCTTAGCGAAATGTAATGGTATTATTGCTGGTGGTATAAAGTTGAGGTTGGGTATGGCTACTGAACTAGCAATTACACAGTCAAGGAATGGTGTGAAGACATTTTTTCATTTGCTTGCACTTGAAATTCTCCAGTCTCCATTCTCCATTCTCCATTCCCACATTTTTCAATTTGTGTACGAGTGCTTTTCTTATTTTCATGAGAGGAACTCGATTAATTTATTTCCCACGATGGAATTTAGAGGGGGAAAAGAAAAAGAATATCTATTTCAGACTTTCAGCGGCCTATTATAA

Protein sequence

MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEILQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL
Homology
[Close]
BLAST of CsaV3_1G023070.1 vs. NCBI nr
Match: KGN62184.1 (hypothetical protein Csa_2G317410 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 7.2e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60
           MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI
Sbjct: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60

Query: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 115
           LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL
Sbjct: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 114

[Close]
BLAST of CsaV3_1G023070.1 vs. TrEMBL
Match: tr|A0A0A0LMC0|A0A0A0LMC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G317410 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.8e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60
           MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI
Sbjct: 1   MNFYNLASLLVGDLAGYSLAKCNGIIAGGIKLRLGMATELAITQSRNGVKTFFHLLALEI 60

Query: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 115
           LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL
Sbjct: 61  LQSPFSILHSHIFQFVYECFSYFHERNSINLFPTMEFRGGKEKEYLFQTFSGLL 114

The following BLAST results are available for this feature:
BLAST of CsaV3_1G023070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62184.17.2e-57100.00hypothetical protein Csa_2G317410 [Cucumis sativus][more]
BLAST of CsaV3_1G023070.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G023070.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G023070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LMC0|A0A0A0LMC0_CUCSA4.8e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G317410 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G023070CsaV3_1G023070gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G023070.1.cds2CsaV3_1G023070.1.cds2CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G023070.1.exon2CsaV3_1G023070.1.exon2exon
CsaV3_1G023070.1.exon1CsaV3_1G023070.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G023070.1CsaV3_1G023070.1-proteinpolypeptide