CsaV3_1G015120.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015120.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10748113 .. 10748422 (+)
Sequence length310
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

mRNA sequence

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Coding sequence (CDS)

ATGGGGATGACCAATAAGGTAAGATTTAAGACGGAAGAAGAGGGAGTCCTCGTCAAACAACTCTACAAGTTGCTTACAACGTGGATGAATCCAAAACTCCACCGTTATTTCCCTCCAACACAGAAGCTTGTCGCCATTGCAATGGCGCCAACAGAGCCATCAATTTCCGATCAGACTGTCCAGATATGCCTGACAACATACACGTTTTTTCCGCCGCCTAATTCAACCCCCCACGCGTCATCCACATTCTTCAATCCTTCAAAATGCCTCAACCAAATCCCCCCCGACTTCAAACCCACGAACAAGATGA

Protein sequence

MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTVQICLTTYTFFPPPNSTPHASSTFFNPSKCLNQIPPDFKPTNKMX
Homology
[Close]
BLAST of CsaV3_1G015120.1 vs. NCBI nr
Match: KGN64960.1 (hypothetical protein Csa_1G168860 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 6.6e-33
Identity = 75/84 (89.29%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
          MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1  MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61 QICLTTYTFF----PPPNSTPHAS 81
          QICLTTYTFF     PP   PH+S
Sbjct: 61 QICLTTYTFFRRLIQPPTRHPHSS 84

[Close]
BLAST of CsaV3_1G015120.1 vs. TrEMBL
Match: tr|A0A0A0LSS3|A0A0A0LSS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168860 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-33
Identity = 75/84 (89.29%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60
          MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV
Sbjct: 1  MGMTNKVRFKTEEEGVLVKQLYKLLTTWMNPKLHRYFPPTQKLVAIAMAPTEPSISDQTV 60

Query: 61 QICLTTYTFF----PPPNSTPHAS 81
          QICLTTYTFF     PP   PH+S
Sbjct: 61 QICLTTYTFFRRLIQPPTRHPHSS 84

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015120.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64960.16.6e-3389.29hypothetical protein Csa_1G168860 [Cucumis sativus][more]
BLAST of CsaV3_1G015120.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015120.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015120.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSS3|A0A0A0LSS3_CUCSA4.3e-3389.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G168860 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G015120CsaV3_1G015120gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G015120.1.exon1CsaV3_1G015120.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G015120.1.cds1CsaV3_1G015120.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G015120.1CsaV3_1G015120.1-proteinpolypeptide