CsaV3_1G014190.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014190.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Late embryogenesis abundant protein
Location	chr1 : 9638263 .. 9639696 (+)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCCGAGACAATGAAAAGGCATAACCCAACAATCTTGAACTACAAGTAAACATAAAACACAATTGTTAAATAGTGGCATATTCCTGTACTCCTTCATTAAGCAAGCCAAAAATCACACACAGACGCACTTCTTATGCTTCTCATCAATAACCCTTCACTTTACACAATAAGAGAACAAATATCCATCCCCCAAAGAAGTAAAGATTTGGTGATCGAAGAAGAAGAATGAGAAGCAGCACTACTACTACTACTACTACACAAGGAGAAGCCTCCTCCTCATCCATTATTAGGGCCCCAAAAAGAGGAGCCTATAGGCAACATGGGATAGCAAAACGCACAAGGGTTATAAGAATCATAGGAAGAAGCTTGTTGTGTGCAATAATGCTTTTGGGTATTGCAATCCTCACATGTTGGTTTGTTGTCATCCCCAGAACCCCACAGCTCATGGTGGAAAGTGGCCAAGTCACAGGCTATCATTCAACTATTAGAAAGCTCAATGCCACCATAGTTTTCAATATCAGGAGCTACAACCCTAACAAAAGAGCCTCCATTTACGTGGATTCTATGAAGATGACAGTCAAAAACTATATGAGCGTACCATTTCACTCTGACATCCCCAACTTCACGATGACACCTCGAAACATGACTGTCTTGACCCCCACCATCCTTGTCAACTGCATATATCCGTTTGGGCGTCCGTTGCATGCAGGTTGGATACATATTGAGCTTAGCTTCTCAGCTAAAGTCAGGTATAAACAGAGATGATATATAAAATATACAAAAGTTGTTAGGTTTTGTTGATGTAAAAAAAACTTCAACTTCAAAATTATATATTTTCGATCAAATTCAAAGAATGAAATTTGTCCGATTTACCTTCATTTAAACTAATAGCTATTTTATTTTTTTGTTTTTAGATTTTGAAAATTAATGTTACGTATGCTATTAAAAAAAATAAGTTTTATTTTCCTTTCATTATCTATGCTCTCATGGGTTTCTTTCAAAATAAAAGTCAAACTTTGTCTCTATAAAAACTTATGGCTCTGTTTGTATCAGTTACATTTTCAACAGATGGGCATCAAAACCTCGGTTGATGGAGATCTATTGTAATCACTTCTGGTTTAAGATCGATGATTCTATGCCTAATTTTGACAACATCAAATGCCAAGTGGATCTTTGAGAGGTTTGATCTAAGACCATGTTTACATGGAATAAAAAGTAATCCACCAATGGTAATACAAGGAGTGGGCCTTAGTCGATTACTTTACTTTTGTTGTTATTTACTTGCTTTTTGTAATTATATATTGCTTTTTGTAATTATAATGTGATGCAACACCCACCTTCAAATTACAATGGCAAATCTAACTTTTTGTAATTACATTGCCTTTTGTAATTACAATGTGATGCAAGACTCACCTTCAAATTACAATGGCAA

mRNA sequence

ATGAGAAGCAGCACTACTACTACTACTACTACACAAGGAGAAGCCTCCTCCTCATCCATTATTAGGGCCCCAAAAAGAGGAGCCTATAGGCAACATGGGATAGCAAAACGCACAAGGGTTATAAGAATCATAGGAAGAAGCTTGTTGTGTGCAATAATGCTTTTGGGTATTGCAATCCTCACATGTTGGTTTGTTGTCATCCCCAGAACCCCACAGCTCATGGTGGAAAGTGGCCAAGTCACAGGCTATCATTCAACTATTAGAAAGCTCAATGCCACCATAGTTTTCAATATCAGGAGCTACAACCCTAACAAAAGAGCCTCCATTTACGTGGATTCTATGAAGATGACAGTCAAAAACTATATGAGCGTACCATTTCACTCTGACATCCCCAACTTCACGATGACACCTCGAAACATGACTGTCTTGACCCCCACCATCCTTGTCAACTGCATATATCCGTTTGGGCGTCCGTTGCATGCAGGTTGGATACATATTGAGCTTAGCTTCTCAGCTAAAGTCAGTTACATTTTCAACAGATGGGCATCAAAACCTCGGTTGATGGAGATCTATTGTAATCACTTCTGGTTTAAGATCGATGATTCTATGCCTAATTTTGACAACATCAAATGCCAAGTGGATCTTTGA

Coding sequence (CDS)

ATGAGAAGCAGCACTACTACTACTACTACTACACAAGGAGAAGCCTCCTCCTCATCCATTATTAGGGCCCCAAAAAGAGGAGCCTATAGGCAACATGGGATAGCAAAACGCACAAGGGTTATAAGAATCATAGGAAGAAGCTTGTTGTGTGCAATAATGCTTTTGGGTATTGCAATCCTCACATGTTGGTTTGTTGTCATCCCCAGAACCCCACAGCTCATGGTGGAAAGTGGCCAAGTCACAGGCTATCATTCAACTATTAGAAAGCTCAATGCCACCATAGTTTTCAATATCAGGAGCTACAACCCTAACAAAAGAGCCTCCATTTACGTGGATTCTATGAAGATGACAGTCAAAAACTATATGAGCGTACCATTTCACTCTGACATCCCCAACTTCACGATGACACCTCGAAACATGACTGTCTTGACCCCCACCATCCTTGTCAACTGCATATATCCGTTTGGGCGTCCGTTGCATGCAGGTTGGATACATATTGAGCTTAGCTTCTCAGCTAAAGTCAGTTACATTTTCAACAGATGGGCATCAAAACCTCGGTTGATGGAGATCTATTGTAATCACTTCTGGTTTAAGATCGATGATTCTATGCCTAATTTTGACAACATCAAATGCCAAGTGGATCTTTGA

Protein sequence

MRSSTTTTTTTQGEASSSSIIRAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL

Homology

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BLAST of CsaV3_1G014190.1 vs. NCBI nr
Match: XP_011654120.1 (PREDICTED: uncharacterized protein LOC105435303 [Cucumis sativus] >KGN64864.1 hypothetical protein Csa_1G132740 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 1.5e-108
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 22  RAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT 81
           RAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT
Sbjct: 22  RAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT 81

Query: 82  GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT 141
           GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT
Sbjct: 82  GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT 141

Query: 142 VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD 201
           VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD
Sbjct: 142 VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD 201

Query: 202 SMPNFDNIKCQVDL 216
           SMPNFDNIKCQVDL
Sbjct: 202 SMPNFDNIKCQVDL 215

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BLAST of CsaV3_1G014190.1 vs. NCBI nr
Match: XP_008462366.2 (PREDICTED: uncharacterized protein LOC103500736 [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 53  MLLGIAILTCWFVVIPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVD 112
           MLLGIAILTCWFVVIPRTP+LMVESG+VTGYHST RKLNATIV NIRSYNPNKRASIY+D
Sbjct: 1   MLLGIAILTCWFVVIPRTPRLMVESGKVTGYHSTNRKLNATIVLNIRSYNPNKRASIYMD 60

Query: 113 SMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILVNCIYPFGRPLHAGWIHIELSFSA 172
           SMKMTVKN MSVPFHSDIPNFTMTP+N+TVL PTILVN IYPFG PLHAGWIHIELSFSA
Sbjct: 61  SMKMTVKNSMSVPFHSDIPNFTMTPQNVTVLNPTILVNFIYPFGLPLHAGWIHIELSFSA 120

Query: 173 KVSYIFNRWASKPRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL 216
           KVSY+ NRWASKPR MEIYCNHF FKI DSMPNF NI+C VDL
Sbjct: 121 KVSYLLNRWASKPRWMEIYCNHFRFKIGDSMPNFQNIECLVDL 163

[Close]

BLAST of CsaV3_1G014190.1 vs. NCBI nr
Match: XP_008462391.1 (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 135/194 (69.59%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 23  APKRGAYRQ-HGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT 82
           APKR  YRQ H   KRTR+IRIIGRSLLC I+ L +AI+TCW VV PRTP+LMVE+ +VT
Sbjct: 18  APKRSFYRQRHETTKRTRIIRIIGRSLLCVIIFLSVAIITCWLVVFPRTPRLMVETSKVT 77

Query: 83  GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT 142
            + ST RKLNATIVF I+SYNPNK+ASIY+DSMKM VK+YM +PFHS IP FT+ PRN T
Sbjct: 78  AHGSTNRKLNATIVFYIKSYNPNKKASIYMDSMKMIVKDYMGLPFHSAIPTFTLMPRNET 137

Query: 143 VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD 202
           V   T+ VN IYPFGRP+H+ WIH+EL FSAKVSYI NRW SKPRL+EIYC+H W KI+D
Sbjct: 138 VFNSTVRVNLIYPFGRPVHSDWIHLELRFSAKVSYIVNRWKSKPRLLEIYCDHLWLKIND 197

Query: 203 SMPNFDNIKCQVDL 216
           S PNFD  KC+VD+
Sbjct: 198 STPNFDRTKCKVDI 211

[Close]

BLAST of CsaV3_1G014190.1 vs. NCBI nr
Match: KGN64863.1 (hypothetical protein Csa_1G132730 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 7.7e-68
Identity = 124/193 (64.25%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 23  APKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTG 82
           APKR   RQ    KRTR+IRIIGRSLL  I+ L +AI+TCW VV PRTP+LMVE+ +VT 
Sbjct: 18  APKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTA 77

Query: 83  YHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTV 142
           + ST R LNATIVF I+SYNPNK+ASI++DS+KM V +YM +PFHS IP FT+ PRN  V
Sbjct: 78  HGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMV 137

Query: 143 LTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDS 202
              T+ VN +YPFGRP+H+ W+H+EL FSA+VSYI NRW SKPRL+EIYC+H W +I+DS
Sbjct: 138 FNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDS 197

Query: 203 MPNFDNIKCQVDL 216
            PNFD  KC+VDL
Sbjct: 198 TPNFDKTKCRVDL 210

[Close]

BLAST of CsaV3_1G014190.1 vs. NCBI nr
Match: XP_008462348.1 (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 9.4e-50
Identity = 107/184 (58.15%), Postives = 135/184 (73.37%), Query Frame = 0


Query: 32  HGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTGYHSTIRKLN 91
           HGI KRTR+IR++GRSLL  I L+ + ++ CW VVIP+TP+L+VE+G+V  + STI  LN
Sbjct: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLN 69

Query: 92  ATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILVNC 151
           ATI F ++SYNPNKRASI++D M+M V N M V F S IP+FT+TPRN TVL   + VN 
Sbjct: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDN-MGVRFSSAIPSFTLTPRNQTVLWSAVQVNF 129

Query: 152 IYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDSMPNFDNIKC 211
            YPFG   +   I+ EL FSA+VSY   +W SKPRL+EIYCNH   KI+DS   FDN KC
Sbjct: 130 EYPFG---YTEEINPELQFSAEVSYSVEKWMSKPRLLEIYCNHLLLKINDS-TTFDNTKC 188

Query: 212 QVDL 216
           +VDL
Sbjct: 190 KVDL 188

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BLAST of CsaV3_1G014190.1 vs. TAIR10
Match: AT5G22870.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 52/193 (26.94%), Postives = 87/193 (45.08%), Query Frame = 0


Query: 36  KRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTGYHST-IRKLNATI 95
           +R  +I  I   +L  I +  +  L  W    P+  +  VE+  V  ++ T    ++AT 
Sbjct: 21  RRPSLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATF 80

Query: 96  VFNIRSYNPNKRASIYVDSMKMTVK------NYMSV-PFHSDIPNFTMTPRNMTVLTPTI 155
            F I+S+NPN R S+Y  S+++ VK       + +V PFH   P   +   + T++   +
Sbjct: 81  QFTIQSHNPNHRISVYYSSVEIFVKFKDQTLAFDTVEPFHQ--PRMNVKQIDETLIAENV 140

Query: 156 LVNCIYPFGRPLHA----GWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDSM 215
            V+     G+ L +    G I  E+   A+V +    W S  R  +I C+H    +  S 
Sbjct: 141 AVS--KSNGKDLRSQNSLGKIGFEVFVKARVRFKVGIWKSSHRTAKIKCSHVTVSL--SQ 200

[Close]

BLAST of CsaV3_1G014190.1 vs. TAIR10
Match: AT1G08160.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-06
Identity = 35/134 (26.12%), Postives = 63/134 (47.01%), Query Frame = 0


Query: 90  LNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILV 149
           +NA   + I+SYNP K  S+   SM+++  ++     H +I  F   P+N T +   ++ 
Sbjct: 88  INAKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVS 147

Query: 150 N--CIYPF-GRPLHA----GWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKI-DD 209
           +   +  F  R L A    G I +E+  +A+VSY    + S+ R ++  C      +   
Sbjct: 148 HNVALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSS 207

Query: 210 SMPNFDNIKCQVDL 216
           S+  F  + C+  L
Sbjct: 208 SLDGFQRVLCKTRL 221

[Close]

BLAST of CsaV3_1G014190.1 vs. TAIR10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 48.9 bits (115), Expect = 4.5e-06
Identity = 50/171 (29.24%), Postives = 77/171 (45.03%), Query Frame = 0


Query: 23  APKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTG 82
           APK    R HG      ++ +  + ++  I++LG+A L  W +V PR  +  V    +T 
Sbjct: 20  APKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTR 79

Query: 83  YHST----IRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTP- 142
           +  T    I + N  +   +R  NPNKR  +Y D  ++    Y      S I   T+TP 
Sbjct: 80  FDHTSPDNILRYNLALTVPVR--NPNKRIGLYYD--RIEAHAYYEGKRFSTI---TLTPF 139

Query: 143 ----RNMTVLTPTILVNCIYPF----GRPLHA----GWIHIELSFSAKVSY 177
               +N TVLTPT     +  F     R L+A    G  +IE+ F  +V +
Sbjct: 140 YQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRF 183

[Close]

BLAST of CsaV3_1G014190.1 vs. Swiss-Prot
Match: sp|Q8VZ13|Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.3e-05
Identity = 35/134 (26.12%), Postives = 63/134 (47.01%), Query Frame = 0


Query: 90  LNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILV 149
           +NA   + I+SYNP K  S+   SM+++  ++     H +I  F   P+N T +   ++ 
Sbjct: 88  INAKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVS 147

Query: 150 N--CIYPF-GRPLHA----GWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKI-DD 209
           +   +  F  R L A    G I +E+  +A+VSY    + S+ R ++  C      +   
Sbjct: 148 HNVALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSS 207

Query: 210 SMPNFDNIKCQVDL 216
           S+  F  + C+  L
Sbjct: 208 SLDGFQRVLCKTRL 221

[Close]

BLAST of CsaV3_1G014190.1 vs. Swiss-Prot
Match: sp|Q9SJ52|NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.2e-05
Identity = 50/171 (29.24%), Postives = 77/171 (45.03%), Query Frame = 0


Query: 23  APKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTG 82
           APK    R HG      ++ +  + ++  I++LG+A L  W +V PR  +  V    +T 
Sbjct: 20  APKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTR 79

Query: 83  YHST----IRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTP- 142
           +  T    I + N  +   +R  NPNKR  +Y D  ++    Y      S I   T+TP 
Sbjct: 80  FDHTSPDNILRYNLALTVPVR--NPNKRIGLYYD--RIEAHAYYEGKRFSTI---TLTPF 139

Query: 143 ----RNMTVLTPTILVNCIYPF----GRPLHA----GWIHIELSFSAKVSY 177
               +N TVLTPT     +  F     R L+A    G  +IE+ F  +V +
Sbjct: 140 YQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRF 183

[Close]

BLAST of CsaV3_1G014190.1 vs. TrEMBL
Match: tr|A0A0A0LV68|A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.0e-108
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 22  RAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT 81
           RAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT
Sbjct: 22  RAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT 81

Query: 82  GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT 141
           GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT
Sbjct: 82  GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT 141

Query: 142 VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD 201
           VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD
Sbjct: 142 VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD 201

Query: 202 SMPNFDNIKCQVDL 216
           SMPNFDNIKCQVDL
Sbjct: 202 SMPNFDNIKCQVDL 215

[Close]

BLAST of CsaV3_1G014190.1 vs. TrEMBL
Match: tr|A0A1S3CGV1|A0A1S3CGV1_CUCME (uncharacterized protein LOC103500736 OS=Cucumis melo OX=3656 GN=LOC103500736 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 7.0e-78
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 53  MLLGIAILTCWFVVIPRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVD 112
           MLLGIAILTCWFVVIPRTP+LMVESG+VTGYHST RKLNATIV NIRSYNPNKRASIY+D
Sbjct: 1   MLLGIAILTCWFVVIPRTPRLMVESGKVTGYHSTNRKLNATIVLNIRSYNPNKRASIYMD 60

Query: 113 SMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILVNCIYPFGRPLHAGWIHIELSFSA 172
           SMKMTVKN MSVPFHSDIPNFTMTP+N+TVL PTILVN IYPFG PLHAGWIHIELSFSA
Sbjct: 61  SMKMTVKNSMSVPFHSDIPNFTMTPQNVTVLNPTILVNFIYPFGLPLHAGWIHIELSFSA 120

Query: 173 KVSYIFNRWASKPRLMEIYCNHFWFKIDDSMPNFDNIKCQVDL 216
           KVSY+ NRWASKPR MEIYCNHF FKI DSMPNF NI+C VDL
Sbjct: 121 KVSYLLNRWASKPRWMEIYCNHFRFKIGDSMPNFQNIECLVDL 163

[Close]

BLAST of CsaV3_1G014190.1 vs. TrEMBL
Match: tr|A0A1S3CGU2|A0A1S3CGU2_CUCME (uncharacterized protein At1g08160-like OS=Cucumis melo OX=3656 GN=LOC103500758 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 8.1e-74
Identity = 135/194 (69.59%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 23  APKRGAYRQ-HGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVT 82
           APKR  YRQ H   KRTR+IRIIGRSLLC I+ L +AI+TCW VV PRTP+LMVE+ +VT
Sbjct: 18  APKRSFYRQRHETTKRTRIIRIIGRSLLCVIIFLSVAIITCWLVVFPRTPRLMVETSKVT 77

Query: 83  GYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMT 142
            + ST RKLNATIVF I+SYNPNK+ASIY+DSMKM VK+YM +PFHS IP FT+ PRN T
Sbjct: 78  AHGSTNRKLNATIVFYIKSYNPNKKASIYMDSMKMIVKDYMGLPFHSAIPTFTLMPRNET 137

Query: 143 VLTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDD 202
           V   T+ VN IYPFGRP+H+ WIH+EL FSAKVSYI NRW SKPRL+EIYC+H W KI+D
Sbjct: 138 VFNSTVRVNLIYPFGRPVHSDWIHLELRFSAKVSYIVNRWKSKPRLLEIYCDHLWLKIND 197

Query: 203 SMPNFDNIKCQVDL 216
           S PNFD  KC+VD+
Sbjct: 198 STPNFDRTKCKVDI 211

[Close]

BLAST of CsaV3_1G014190.1 vs. TrEMBL
Match: tr|A0A0A0LSU5|A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.1e-68
Identity = 124/193 (64.25%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 23  APKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTG 82
           APKR   RQ    KRTR+IRIIGRSLL  I+ L +AI+TCW VV PRTP+LMVE+ +VT 
Sbjct: 18  APKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLVVFPRTPRLMVETSKVTA 77

Query: 83  YHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTV 142
           + ST R LNATIVF I+SYNPNK+ASI++DS+KM V +YM +PFHS IP FT+ PRN  V
Sbjct: 78  HGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLPFHSTIPTFTLMPRNEMV 137

Query: 143 LTPTILVNCIYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDS 202
              T+ VN +YPFGRP+H+ W+H+EL FSA+VSYI NRW SKPRL+EIYC+H W +I+DS
Sbjct: 138 FNSTVRVNFMYPFGRPVHSDWVHLELRFSAQVSYIVNRWRSKPRLLEIYCDHLWLRINDS 197

Query: 203 MPNFDNIKCQVDL 216
            PNFD  KC+VDL
Sbjct: 198 TPNFDKTKCRVDL 210

[Close]

BLAST of CsaV3_1G014190.1 vs. TrEMBL
Match: tr|A0A1S3CGS4|A0A1S3CGS4_CUCME (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.2e-50
Identity = 107/184 (58.15%), Postives = 135/184 (73.37%), Query Frame = 0


Query: 32  HGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVIPRTPQLMVESGQVTGYHSTIRKLN 91
           HGI KRTR+IR++GRSLL  I L+ + ++ CW VVIP+TP+L+VE+G+V  + STI  LN
Sbjct: 10  HGITKRTRLIRLVGRSLLGVIFLVALGMIICWLVVIPKTPRLIVETGKVVVHSSTISMLN 69

Query: 92  ATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFHSDIPNFTMTPRNMTVLTPTILVNC 151
           ATI F ++SYNPNKRASI++D M+M V N M V F S IP+FT+TPRN TVL   + VN 
Sbjct: 70  ATIAFTVKSYNPNKRASIHMDYMRMIVDN-MGVRFSSAIPSFTLTPRNQTVLWSAVQVNF 129

Query: 152 IYPFGRPLHAGWIHIELSFSAKVSYIFNRWASKPRLMEIYCNHFWFKIDDSMPNFDNIKC 211
            YPFG   +   I+ EL FSA+VSY   +W SKPRL+EIYCNH   KI+DS   FDN KC
Sbjct: 130 EYPFG---YTEEINPELQFSAEVSYSVEKWMSKPRLLEIYCNHLLLKINDS-TTFDNTKC 188

Query: 212 QVDL 216
           +VDL
Sbjct: 190 KVDL 188

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654120.1	1.5e-108	100.00	PREDICTED: uncharacterized protein LOC105435303 [Cucumis sativus] >KGN64864.1 hy...	[more]
XP_008462366.2	1.1e-77	88.34	PREDICTED: uncharacterized protein LOC103500736 [Cucumis melo]	[more]
XP_008462391.1	1.2e-73	69.59	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
KGN64863.1	7.7e-68	64.25	hypothetical protein Csa_1G132730 [Cucumis sativus]	[more]
XP_008462348.1	9.4e-50	58.15	PREDICTED: protein YLS9-like [Cucumis melo]	[more]

BLAST of CsaV3_1G014190.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22870.1	2.2e-08	26.94	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G08160.1	3.5e-06	26.12	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G35980.1	4.5e-06	29.24	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of CsaV3_1G014190.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VZ13\|Y1816_ARATH	6.3e-05	26.12	Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 P...	[more]
sp\|Q9SJ52\|NHL10_ARATH	8.2e-05	29.24	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]

BLAST of CsaV3_1G014190.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV68\|A0A0A0LV68_CUCSA	1.0e-108	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132740 PE=4 SV=1	[more]
tr\|A0A1S3CGV1\|A0A1S3CGV1_CUCME	7.0e-78	88.34	uncharacterized protein LOC103500736 OS=Cucumis melo OX=3656 GN=LOC103500736 PE=...	[more]
tr\|A0A1S3CGU2\|A0A1S3CGU2_CUCME	8.1e-74	69.59	uncharacterized protein At1g08160-like OS=Cucumis melo OX=3656 GN=LOC103500758 P...	[more]
tr\|A0A0A0LSU5\|A0A0A0LSU5_CUCSA	5.1e-68	64.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G132730 PE=4 SV=1	[more]
tr\|A0A1S3CGS4\|A0A1S3CGS4_CUCME	6.2e-50	58.15	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103500718 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G014190	CsaV3_1G014190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G014190.1.exon1	CsaV3_1G014190.1.exon1	exon
CsaV3_1G014190.1.exon2	CsaV3_1G014190.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G014190.1.cds1	CsaV3_1G014190.1.cds1	CDS
CsaV3_1G014190.1.cds2	CsaV3_1G014190.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G014190.1	CsaV3_1G014190.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 36..215
None	No IPR available	PANTHER	PTHR31852:SF5	GB\|AAF18257.1	coord: 36..215