CsaV3_1G013800.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013800.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 9088602 .. 9089073 (+)
Sequence length204
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATATATATATATAATTATCAGGGTTGCCTTGTTTTGCATGCAAGTATTAAGAAAAAGAAATCAAATTAAATGTAATTTTTCCTTTCTTCTTCCATTCGATCACATGCGACCCCTCTTCACTTTCTTTGGTTGGCCACCGGCTAGCCGATGACCGCATGCAGGCTTCCGTCTGCCCTAACCCCCGTCGACGACTGACAGACGCTGTAAGCCTTTGCGATCGTGCTGTTCTCCGAGAGCTGCCGTTGGTCTGCGCTGTCGCTTCTAGAGCCGTTCTCCCATTATTTCTTAGAAATATAAGTGTCACATGTCGCCTTAAAAACAAGGAACACCACTTAATAAAACAATTGAACTTGAATTAGTGTAAGATTCAACTACTCATAGAAACATTAGTCAATAATTGCTTAGACCTCCTATATCGAACAAGTGTAGATTTTTGTTCATGTGTAACTCATGTTTTGATATGATGCAG

mRNA sequence

ATGCAGGCTTCCGTCTGCCCTAACCCCCGTCGACGACTGACAGACGCTGTAAGCCTTTGCGATCGTGCTGTTCTCCGAGAGCTGCCGTTGGTCTGCGCTGTCGCTTCTAGAGCCGTTCTCCCATTATTTCTTAGAAATATAAGTGTCACATGTCGCCTTAAAAACAAGGAACACCACTTAATAAAACAATTGAACTTGAATTAG

Coding sequence (CDS)

ATGCAGGCTTCCGTCTGCCCTAACCCCCGTCGACGACTGACAGACGCTGTAAGCCTTTGCGATCGTGCTGTTCTCCGAGAGCTGCCGTTGGTCTGCGCTGTCGCTTCTAGAGCCGTTCTCCCATTATTTCTTAGAAATATAAGTGTCACATGTCGCCTTAAAAACAAGGAACACCACTTAATAAAACAATTGAACTTGAATTAG

Protein sequence

MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHLIKQLNLN
Homology
[Close]
BLAST of CsaV3_1G013800.1 vs. NCBI nr
Match: KGN64822.1 (hypothetical protein Csa_1G119890 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHL 60
          MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHL
Sbjct: 1  MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHL 60

Query: 61 IKQLNLN 68
          IKQLNLN
Sbjct: 61 IKQLNLN 67

[Close]
BLAST of CsaV3_1G013800.1 vs. TrEMBL
Match: tr|A0A0A0LVG7|A0A0A0LVG7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119890 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHL 60
          MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHL
Sbjct: 1  MQASVCPNPRRRLTDAVSLCDRAVLRELPLVCAVASRAVLPLFLRNISVTCRLKNKEHHL 60

Query: 61 IKQLNLN 68
          IKQLNLN
Sbjct: 61 IKQLNLN 67

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64822.12.4e-28100.00hypothetical protein Csa_1G119890 [Cucumis sativus][more]
BLAST of CsaV3_1G013800.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013800.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013800.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVG7|A0A0A0LVG7_CUCSA1.6e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119890 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G013800CsaV3_1G013800gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G013800.1.exon1CsaV3_1G013800.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G013800.1.cds1CsaV3_1G013800.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G013800.1CsaV3_1G013800.1-proteinpolypeptide