CsaV3_1G009870.1 (mRNA) Cucumber (Chinese Long) v3

NameCsaV3_1G009870.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 6147825 .. 6148040 (+)
Sequence length216
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGGGGCCAAAGGCCATAGGGGGTTGCCTCCAGTGGACCCTGGCCCCATTTTTTGGCCGCAACCACCGCCCTCTCTCTAACCCACTGGTCCCTCCCCGGTTGCCCATTACTAAATACGGTGGTCGTGATCGTAGTGGTAACAATGACGACAACTACGGCGATCATCCTTTTCTCCTGCCTTGTCGTTTGTCGATCCTCTCACTTGCTTGA

mRNA sequence

ATGGTTGAGGGGCCAAAGGCCATAGGGGGTTGCCTCCAGTGGACCCTGGCCCCATTTTTTGGCCGCAACCACCGCCCTCTCTCTAACCCACTGGTCCCTCCCCGGTTGCCCATTACTAAATACGGTGGTCGTGATCGTAGTGGTAACAATGACGACAACTACGGCGATCATCCTTTTCTCCTGCCTTGTCGTTTGTCGATCCTCTCACTTGCTTGA

Coding sequence (CDS)

ATGGTTGAGGGGCCAAAGGCCATAGGGGGTTGCCTCCAGTGGACCCTGGCCCCATTTTTTGGCCGCAACCACCGCCCTCTCTCTAACCCACTGGTCCCTCCCCGGTTGCCCATTACTAAATACGGTGGTCGTGATCGTAGTGGTAACAATGACGACAACTACGGCGATCATCCTTTTCTCCTGCCTTGTCGTTTGTCGATCCTCTCACTTGCTTGA

Protein sequence

MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFLLPCRLSILSLA
BLAST of CsaV3_1G009870.1 vs. NCBI nr
Match: KGN64436.1 (hypothetical protein Csa_1G051735 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 5.2e-37
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60
          MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL
Sbjct: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60

Query: 61 LPCRLSILSLA 72
          LPCRLSILSLA
Sbjct: 61 LPCRLSILSLA 71

BLAST of CsaV3_1G009870.1 vs. TrEMBL
Match: tr|A0A0A0LWS2|A0A0A0LWS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051735 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.4e-37
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60
          MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL
Sbjct: 1  MVEGPKAIGGCLQWTLAPFFGRNHRPLSNPLVPPRLPITKYGGRDRSGNNDDNYGDHPFL 60

Query: 61 LPCRLSILSLA 72
          LPCRLSILSLA
Sbjct: 61 LPCRLSILSLA 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN64436.15.2e-37100.00hypothetical protein Csa_1G051735 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LWS2|A0A0A0LWS2_CUCSA3.4e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051735 PE=4 SV=1[more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G009870CsaV3_1G009870gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G009870.1.exon1CsaV3_1G009870.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G009870.1.cds1CsaV3_1G009870.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G009870.1CsaV3_1G009870.1-proteinpolypeptide


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..57