CsaV3_1G009740.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G009740.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 6022185 .. 6022594 (-)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAGTAATCCGAACAGAACCGGCGCCCAGTCCAACATTGCTTCGCTTCGGTTCCGGCTCCGATGCCGGCGACGATGAGTTTAATAAGGTTAAAGAAGGAGGTGGGTGGTTTATAATTTTGCATCGTATTTATAGAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

mRNA sequence

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Coding sequence (CDS)

ATGAAGGGGAGGGAGGAACAGAAGAGTCATTTCCAGAACTCAGCCGGTGAAGATATGAATATCGACGGCCAAAATGAGAATGGTGAAGACACCGAAAAAGAGAATGGTATGGACAATAATGGCCTTGCCGTTAGTGGTGAAGCTTCCGAATTCAACCATACGAGAATTTCCGGGCAACTGGAAAAGCAGGCCCGGCGAGAGGAGAATGAAGAGAAAGTTCCTGTTGAGACTTGGATTGATTTTAAAATTTCCACCGCCGTGGCTCTGTCTCTCTGTTAA

Protein sequence

MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQLEKQARREENEEKVPVETWIDFKISTAVALSLC

Homology

[Close]

BLAST of CsaV3_1G009740.1 vs. NCBI nr
Match: KGN64419.1 (hypothetical protein Csa_1G050580 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.9e-29
Identity = 91/127 (71.65%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEE-----------------------------------KVPVETWIDFKIST 93
           EKQARREENEE                                   +VPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

[Close]

BLAST of CsaV3_1G009740.1 vs. TrEMBL
Match: tr|A0A0A0LTW0|A0A0A0LTW0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-29
Identity = 91/127 (71.65%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60
           MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL
Sbjct: 1   MKGREEQKSHFQNSAGEDMNIDGQNENXXXXXXXXXXXNNGLAVSGEASEFNHTRISGQL 60

Query: 61  EKQARREENEE-----------------------------------KVPVETWIDFKIST 93
           EKQARREENEE                                   +VPVETWIDFKIST
Sbjct: 61  EKQARREENEENPTLLRFGSGSDAGDDEFNKVKEGGGWFIILHRIYRVPVETWIDFKIST 120

The following BLAST results are available for this feature:

BLAST of CsaV3_1G009740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64419.1	3.9e-29	71.65	hypothetical protein Csa_1G050580 [Cucumis sativus]	[more]

BLAST of CsaV3_1G009740.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G009740.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G009740.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTW0\|A0A0A0LTW0_CUCSA	2.6e-29	71.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G009740	CsaV3_1G009740	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G009740.1.cds2	CsaV3_1G009740.1.cds2	CDS
CsaV3_1G009740.1.cds1	CsaV3_1G009740.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G009740.1.exon2	CsaV3_1G009740.1.exon2	exon
CsaV3_1G009740.1.exon1	CsaV3_1G009740.1.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G009740.1	CsaV3_1G009740.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..74