CsaV3_1G005560.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005560.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3616888 .. 3617726 (+)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATTAGGGCACAAGAATCTCCTCTCCTACATTTTGTTCTTCATTTTCTTTTTGGAGAATCATCGATTCCATTGTTTTATTGATTTTTGGCTCTCCCGCCCTATTTCTGCACCGGGAGATCCTTCTCAGGTTTTCCCATCTGCATTCCACCGGTTCCTTAACTAATTGTTTTCTGTAAAGCTACTCGTTTTCTCAGAAATAGATTAATCTTCTTGCTTGATCATCAAATTCGATTTGTGGAAATGTATATTTCTCTCTGTTAATTGATCGGGTCTGGTTAATTTATGGAAGGGATCTGTCCTTCCTGATTGCTGGGAGTTATTTTTTTAGTATGATGATGTGACTACAACAAACTCAATCTGCTCTTGTTGTAAGATTTAATTTTCAAATTTCTTCAATCCTTCCTTTGTCTTGTAATTCTTATTGGGTGTTTTTTTCTTTTGGCGAGTTATTCAAGCGAGTTTCACTTATTGTATTATCATTTTTTCCTTTTTGTTTTTGTTCATGAACACTGTATTTCTCCACTGTCATTGTTTCTGAAGCAATTTGCATGTTTTGGTTACTTTGACTCTCTGGGTGTTACAAAGTTTGCCTCGTTATATTACATTGTCCATTGTTTTATATCATTCCATCCGTGCCTTGTAGTATCTCGGAGACGGCTGATATTCATCTCCATTCTAACTGTTTCCTTGATGTTAGAATCATATTCGTTTTTATTTTTATTTTTGAAGCATGACGTGAAAGTGATAATAATGCTTCTTTGTGGTGCAGGGAGTTATTTCAACTTAATTGAAGTCAACTTCTTTTTCGGAAGTAGGAGAAGAAAAGGGAGCTGA

mRNA sequence

ATGCAATTAGGGCACAAGAATCTCCTCTCCTACATTTTGTTCTTCATTTTCTTTTTGGAGAATCATCGATTCCATTGTTTTATTGATTTTTGGCTCTCCCGCCCTATTTCTGCACCGGGAGATCCTTCTCAGTATGATGATGTGACTACAACAAACTCAATCTGCTCTTGTTGGAGTTATTTCAACTTAATTGAAGTCAACTTCTTTTTCGGAAGTAGGAGAAGAAAAGGGAGCTGA

Coding sequence (CDS)

ATGCAATTAGGGCACAAGAATCTCCTCTCCTACATTTTGTTCTTCATTTTCTTTTTGGAGAATCATCGATTCCATTGTTTTATTGATTTTTGGCTCTCCCGCCCTATTTCTGCACCGGGAGATCCTTCTCAGTATGATGATGTGACTACAACAAACTCAATCTGCTCTTGTTGGAGTTATTTCAACTTAATTGAAGTCAACTTCTTTTTCGGAAGTAGGAGAAGAAAAGGGAGCTGA

Protein sequence

MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSYFNLIEVNFFFGSRRRKGS
Homology
[Close]
BLAST of CsaV3_1G005560.1 vs. NCBI nr
Match: KGN64008.1 (hypothetical protein Csa_1G033270 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.7e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60
          MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY
Sbjct: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60

Query: 61 FNLIEVNFFFGSRRRKGS 79
          FNLIEVNFFFGSRRRKGS
Sbjct: 61 FNLIEVNFFFGSRRRKGS 78

[Close]
BLAST of CsaV3_1G005560.1 vs. TrEMBL
Match: tr|A0A0A0LQI4|A0A0A0LQI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033270 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60
          MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY
Sbjct: 1  MQLGHKNLLSYILFFIFFLENHRFHCFIDFWLSRPISAPGDPSQYDDVTTTNSICSCWSY 60

Query: 61 FNLIEVNFFFGSRRRKGS 79
          FNLIEVNFFFGSRRRKGS
Sbjct: 61 FNLIEVNFFFGSRRRKGS 78

The following BLAST results are available for this feature:
BLAST of CsaV3_1G005560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64008.12.7e-39100.00hypothetical protein Csa_1G033270 [Cucumis sativus][more]
BLAST of CsaV3_1G005560.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005560.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005560.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQI4|A0A0A0LQI4_CUCSA1.8e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033270 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G005560CsaV3_1G005560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G005560.1CsaV3_1G005560.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G005560.1.exon1CsaV3_1G005560.1.exon1exon
CsaV3_1G005560.1.exon2CsaV3_1G005560.1.exon2exon
CsaV3_1G005560.1.exon3CsaV3_1G005560.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G005560.1.cds1CsaV3_1G005560.1.cds1CDS
CsaV3_1G005560.1.cds2CsaV3_1G005560.1.cds2CDS
CsaV3_1G005560.1.cds3CsaV3_1G005560.1.cds3CDS