Csa7G452110.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G452110.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 18927340 .. 18931187 (+)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATATCCAATAAAAAGAACAGGGAAGTGTTTTCATTCTTTTTATTTAAGTGGAACTAAAATTTTCAGTAGAACTTGGAATGTGATGCACGTGTTTCAAATCTTTGCTAGATGTTAAAAGCAAACGTTACCAGAAAGGCGCTGTGCTAAAGTTCCATTGGCCATGTACTCATAAATGAGGCCGAGATGAGTTCCTTCGTTCAAATACCCTACAAGGTTTGTCAAGTTTCGGTGGTGAACTTTAAGGAGAATGGTAACCTGTATGAAAGGGCATCTTTTTAGTCTGATAAGCAAGTGTGAGCTAAATATTTTTTATTAGAATATCGAAATATGAGATACTATATACAAATACATTCCTCTTCTTTAAATTGATCGTGGCCTTGTATTGCTGATGGTGCTAGCATCTTCACAGCCACTTGAATATCATCAATCAACCCATGGTAAACTGCTCCAAAACTACCTCTACCAAGAATCTGGTCAAAATTGTTGGTCATTGTCACAACTTCAGAGTAAGTGAACTGCCGCCTTCTCGTTTTCAAAGAACTGCTTCCAATGCTCGGGTTGGTTTGCGGACGATCCACCTCCAAGACCTCTTTACCTTTTTCTTTCCTTTTTCTTCTTGCAATACAAAAGAAAATCCCTGCAATTGTGGAAATAGCAAGTAGGCCACCAACCGATGCTACTACTGGAATCACAAACTTATTCTTTTTTTTCTGCTTCTCCCCTTTCTGTTCCTCAGTGCAATCACTTAAAGGATGTGCTTCAAGATTTGGATTACCTTTCACGCTGTCATCAATAAATTTTCATTAGTAGGCATGTTAGACGTAGAACTTGAAATTGAAATATTACTTACAAGTCCAGCTATTCTAAGAAAGATACCTCAGTGATAGTGAATTATCATTGAATCTTCTTAAGAGTACAGGTGGAATTGGACACGAGAGATTGTTGTTCTCCAAGTTTCTGTAAATAGAGAGAATACGTTTTCAGTTATCCTACAAACTACCTGGTCCTTGACTTTTTTTATTTATTTTTTCATTTTCATTGTAAGTAACTTACAGGACTTTGAGATTTGACAATTTGGACAGAGAATCAGGCAGTTTTCCTGTTAAGCCATTGTTTGACAAGTCCCTGAAATTAAAACTCTATTTACTATAATTGCTTTTAAGATTAAATTGGAGATCCTAGTTTAGATATTGTTTAAAGTAAAGATACTTACAGGGTTTCTAGGGCTGCTAGATTGGATAGATCTGGAGATATGTCTCCTGTCAGACCACTTGACGACAAGTTCCTGTAAGTTTTTTATTAGTGTTTTTTTTATCTCAATGCATATGTTTGGCTGGGAAACTTGGATGATTTATTTTCTAAGTAAAAAGCATGCATATACTTACAATGATATGATTCTTGGGATTGACTCATTGGTACAACCTACACCATTCCAAGGATATGCTTTGGGGATGCATGGATCTCCTTGCCAATCTTTGATGACTCCGTAAGTTGACTTTAATTTTCTCATTGTGTCCACTGATTTTCAGTGTATTGCATTCATGAAATCAATACTCAAGATTAAATTATTTGCCATCAGAATGTAAAAGCCGAAAATAAGAATCTAACAATGGAAAGTCAAGTCATCGTACCATCTTCCTGATCTGATTCTAGTTCTGAGATCTCAATTCTGAAATATACTTCTAAAGCATTGATGATTGGAGGAAGTGTTGAATTGTCAGTTCGAAAAAATGAAAGGTTGTGTTGTTTTTGTGGGAATTCCAATGGTTTGGTTTTATAATAGCTGCTTGGATACAAGTAATCGGGAATAATAGGTCCATCCCAATATTTCCCGTTATGACTGATGTTGAACCCTCGGAATTGCTTACGTGGAAGCTTTATCAACTCTGCAAAGTGAAAGTATATATAATACTGGATATTTTCATCATCTGACTTCCACCAAAGATTAATAGATGAACTCGTGTTTTTTGGTGCTATAGCAGTTTCCATGACTATGGCTGCTGGATGGTACTTGTTGTGGCCGTCAACATTTACAGTAAGAGAGGTGTTTAATTGAATGAAATAATCGTCATCATGGAAAGGATACCAAATTCGATCGAAAACATCATAAGGGTACCTGAAACAAAGGGGCACACGCACAAGAAATATTCCTTTTAACCATATTAGAAATTTCTTGCTGTGATATACAATAACGCATGGCAAAGTTGATGTATCAATAATAACTTACCTGTATTTTTCATTTGATCCCGACCCCATATTCAGTCGATCAAAAGTTGACAAGGATCCAAATTGAATTGGGTAAGTATCTTCTGGTAAAGGTCTAAATTCCAATGCAGAGATGAAAGGTATTCCAGTTCCCGTATTTATTAGACAGATTTGAACTCTATTTACTGATGGAATATGTATGATTTCTTTGTAGACCTCACTTGCTGTGTACTCAATCATCACTTTATCCCACAGGCTATCTCCAAAGTAGAGATCAAATGTTGGTAAGTTATTTAACCCATCATAATTTCCATACACAAAGCTTGCTCGAATTAAATATTTCTTTTGACTGATAATATTGCTTATGTTGTAACAGTTTCTGGTTTCTTGACGAAAGCTTCTAAGGGACTGTAGTTGTCTTTGATAGAAGCTCTTGAAGTTTGCGTTTATGGTTTTGCTTTCGCCACTGTTTATATATGCTGCATCTGAAATGTAGTCAATGCTTGTTGTTGGCTCCTTGTATGTTGAATTTTCCGGTAATCCACAATCCAAGCTTATAAAACCTGAGATAATTTTAGTCACATACAATTTGATGAATGTTTATGTAGAAATATACAAATGATGATAACAATTTTTACCTGATTGATCTTGAGCTTGAACAGCAAGTACAAGAGCTAGACCAACCAGAAAAGATCTCGTTGTTGCGTTCATTATCATGCCTTGGGAATTTCTCTCAGATTTGCTGCAGATAAGAATTCAAGTCAGTTATCTTGGCTTGCTAGGCCTTCCAAGTAATGTTCTTATATGTCTAATTCGTATTTGTGCCTTGACATTGAACATTTCATTTCTTCTCATCATTATTATATTATACTTCCCCTATACTTTTGATGTATAGACTTTTAAAATATATTTTGAAGACGTGACTTATATTGGTGACATTTAAGATTTAGAAGTTCATTTACTTTATTATAAAAGACACTATCTTCATATGATAATTCAACTGATTATCTTAAAGAATATAGTTTTGATGTATAGACTTTTAAAATGTGATATGCTCATTAAATTTGGCAAAATAACAGAAACTGGAGATCTAGCATTGCAAAGAAAGATTCATATTGTTAGATCTAAATGTTTTGCAGGTTATAGATCTTGGTCATAGATATTAAATTCATAGAACCTACAAGATATCTTCTAAACATTCCACTAATTCAACCAAATAAGGAATATCTTTTTCTTCTTTAAATCAAGCAGTTCTAATTTGTGATGTTGCTGCTCATGTTTGCAAGTTGACTTGAACTTGGTCTATCATTTTTTTAAAAAATAAATTTTCTGAGTTCAAGAATGTACTGATTTGTTTGTTTGTTTGTTTTTTTTATTTTTATGGCAGGACTTGGTCATCTATTAGAATACAAACAGTTGGACAGAGAGAATTTCAGCCCAATCATTGGCATCATGCTTTCCTTAGCAACGTTATTATTTAGACTTTACAAGCCCTTTATTTTATGCCCTACTTTCCCCTTAGCAGTACTAGAATTGATATGACATTTCTCTTAAAGGTTCTATTTTTCATTTCCATGGTTATTGTAATAAACAAAGGAAATTTGAAACTTGGTGAGCACCAATTATTTGAATGATAATGGC

mRNA sequence

ATGCTTGTTGTTGGCTCCTTGTATGTTGAATTTTCCGCAAGTACAAGAGCTAGACCAACCAGAAAAGATCTCGTTGTTGCGTTCATTATCATGCCTTGGGAATTTCTCTCAGATTTGCTGCAGATAAGAATTCAAGTCAGTTATCTTGGCTTGCTAGGCCTTCCAAGACTTGGTCATCTATTAGAATACAAACAGTTGGACAGAGAGAATTTCAGCCCAATCATTGGCATCATGCTTTCCTTAGCAACGTTATTATTTAGACTTTACAAGCCCTTTATTTTATGCCCTACTTTCCCCTTAGCAGTACTAGAATTGATATGA

Coding sequence (CDS)

ATGCTTGTTGTTGGCTCCTTGTATGTTGAATTTTCCGCAAGTACAAGAGCTAGACCAACCAGAAAAGATCTCGTTGTTGCGTTCATTATCATGCCTTGGGAATTTCTCTCAGATTTGCTGCAGATAAGAATTCAAGTCAGTTATCTTGGCTTGCTAGGCCTTCCAAGACTTGGTCATCTATTAGAATACAAACAGTTGGACAGAGAGAATTTCAGCCCAATCATTGGCATCATGCTTTCCTTAGCAACGTTATTATTTAGACTTTACAAGCCCTTTATTTTATGCCCTACTTTCCCCTTAGCAGTACTAGAATTGATATGA

Protein sequence

MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHLLEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI*
Homology
[Close]
BLAST of Csa7G452110.1 vs. TrEMBL
Match: A0A0A0KCS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452110 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.4e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHL 60
           MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHL
Sbjct: 1   MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHL 60

Query: 61  LEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI 107
           LEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI
Sbjct: 61  LEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI 106

[Close]
BLAST of Csa7G452110.1 vs. NCBI nr
Match: gi|700190323|gb|KGN45556.1| (hypothetical protein Csa_7G452110 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHL 60
           MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHL
Sbjct: 1   MLVVGSLYVEFSASTRARPTRKDLVVAFIIMPWEFLSDLLQIRIQVSYLGLLGLPRLGHL 60

Query: 61  LEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI 107
           LEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI
Sbjct: 61  LEYKQLDRENFSPIIGIMLSLATLLFRLYKPFILCPTFPLAVLELI 106

The following BLAST results are available for this feature:
BLAST of Csa7G452110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCS0_CUCSA3.4e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G452110 PE=4 SV=1[more]
BLAST of Csa7G452110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190323|gb|KGN45556.1|4.8e-51100.00hypothetical protein Csa_7G452110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G452110Csa7G452110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G452110.1Csa7G452110.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G452110.1.utr5p1Csa7G452110.1.utr5p1five_prime_UTR
Csa7G452110.1.utr5p2Csa7G452110.1.utr5p2five_prime_UTR
Csa7G452110.1.utr5p3Csa7G452110.1.utr5p3five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G452110.1.cds3Csa7G452110.1.cds3CDS
Csa7G452110.1.cds4Csa7G452110.1.cds4CDS
Csa7G452110.1.cds5Csa7G452110.1.cds5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G452110.1.utr3p1Csa7G452110.1.utr3p1three_prime_UTR