Csa7G394070.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G394070.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 15005663 .. 15006122 (-)
Sequence length291
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCATTTATCAAATCTTTAATTTCTGTAGCTCTTTTGGCTCTTCTTTTGCTCTCTCGATTTCCATCCACTTCTGCTGTCAATCACAACATGGCTCCTAATTCGCCTATTGGGATGTTTCAAATGACCGAGTATCAACAAGTTGTAGAGAACAAGAATGGATATCGATACTCTTTTGAACAAAAAATCGTCAAAAAACGAGCTCGACGATCCAAGAAGGAAGCTGAAGGTCCAAGTCCCTCAATGGCAAATCGAAGCCGAATGACGTGGTTTGACATCCAGTCTTTATTGTGTATGTGTATTGTTTTTGGCTTGTTGATGTGAAGTGAATAATAATGAGGTATTTACTCTACTAGAAAGTTTGAGCTCGGGTTTATTTGTTTGTTTGATGAAAAAAATTGAATTGTATTTTATCTTTAGTCTTGAAATTTGTTTTAGCTTCATTATTGGATTGTAA

mRNA sequence

ATGCCTCCATTTATCAAATCTTTAATTTCTGTAGCTCTTTTGGCTCTTCTTTTGCTCTCTCGATTTCCATCCACTTCTGCTGTCAATCACAACATGGCTCCTAATTCGCCTATTGGGATGTTTCAAATGACCGAGTATCAACAAGTTGTAGAGAACAAGAATGGATATCGATACTCTTTTGAACAAAAAATCGTCAAAAAACGAGCTCGACGATCCAAGAAGGAAGCTGAAGGTCCAAGTCCCTCAATGGCAAATCGAAGCCGAATGACGTGCTTCATTATTGGATTGTAA

Coding sequence (CDS)

ATGCCTCCATTTATCAAATCTTTAATTTCTGTAGCTCTTTTGGCTCTTCTTTTGCTCTCTCGATTTCCATCCACTTCTGCTGTCAATCACAACATGGCTCCTAATTCGCCTATTGGGATGTTTCAAATGACCGAGTATCAACAAGTTGTAGAGAACAAGAATGGATATCGATACTCTTTTGAACAAAAAATCGTCAAAAAACGAGCTCGACGATCCAAGAAGGAAGCTGAAGGTCCAAGTCCCTCAATGGCAAATCGAAGCCGAATGACGTGCTTCATTATTGGATTGTAA

Protein sequence

MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSFEQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL*
Homology
[Close]
BLAST of Csa7G394070.1 vs. TrEMBL
Match: A0A0A0K934_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394070 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSF 60
          MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSF
Sbjct: 1  MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSF 60

Query: 61 EQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL 97
          EQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL
Sbjct: 61 EQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL 96

[Close]
BLAST of Csa7G394070.1 vs. NCBI nr
Match: gi|700189654|gb|KGN44887.1| (hypothetical protein Csa_7G394070 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.2e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSF 60
          MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSF
Sbjct: 1  MPPFIKSLISVALLALLLLSRFPSTSAVNHNMAPNSPIGMFQMTEYQQVVENKNGYRYSF 60

Query: 61 EQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL 97
          EQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL
Sbjct: 61 EQKIVKKRARRSKKEAEGPSPSMANRSRMTCFIIGL 96

The following BLAST results are available for this feature:
BLAST of Csa7G394070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K934_CUCSA5.0e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394070 PE=4 SV=1[more]
BLAST of Csa7G394070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189654|gb|KGN44887.1|7.2e-46100.00hypothetical protein Csa_7G394070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G394070Csa7G394070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G394070.1Csa7G394070.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G394070.1.cds2Csa7G394070.1.cds2CDS
Csa7G394070.1.cds1Csa7G394070.1.cds1CDS