Csa7G239580.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G239580.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 8814648 .. 8815552 (+)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATTCATCTTCGGCATGCCTTGATTGCGTCAATGGGTTTCAGTTTTTTTTTCTTTTTTTATTTTAGTTTCGTTGATATTTCTGATCCAAGTGTTCACTGATTCAATACATTTGTTTCATTTGTCAATGGCAGTGATGACGAATTCATATACCATCAAACTATGAAAACTTTGCCTTCTTTGTAGGGTGAGTTTATTGATGTGAACATGAATATCTTTCTGAGCCTCTCAGTCTCTTCTTGATAAGGATTAACTCACATTTTTCAACATATAGCTTTTCACTTAATTACTTTGTTTATACATATATATATGTGTGTGTGTTTTATTTCAGAGCTGATGTGCTCGTAATGTATCGAATATGAAATTGCATTAAGGCAATAAATTAGAGTCTCTGAGGCGCTCTTTTCCGTAGCGTCTTCAGCGCTGTACGTTGCCAACAAGAATTTGGGGCCGAGATTCTGGCACTTTCCTTAACCTCCTAAGGCTTGTGCATTCAGGTGCTCCTAAATTTTGAATATATCGCAATTTTGATATTCCTAAATTACCATCTTTTTAGGTCCATTGCTTCATTTAAGCGGACTACGCTTTGCCCTTCTTTTCTTTTTTATTTACTACAATCATTTTCTTGAACAGATTGGTGTTTGGAATATATGATTTTTCGAATGTTCTTCCTTTTATTAGTTCACTCTCAACCCAGGTAGAGACCATCCTTGTTCTAATGGTTGGAGTATTGTTAATACATGGATTTTTAGTCATATTCCAGTTTTAAAATATGTTAATACGTCGGTAGAGGATTAATCGACCACTTGGCCTTGATAATTTGATTACAATTATTTTTTAATTGCAGAAATAGCGGCTGGCAGAATTTGGAGGACTCTTTTGCAACTGCGTGCAGTGATTAA

mRNA sequence

ATGTTTATTCATCTTCGGCATGCCTTGATTGCGTCAATGGGTTTCAGTTTTTTTTTCTTTTTTTATTTTAGTTTCGTTGATATTTCTGATCCAAGTCGTCTTCAGCGCTGTACGTTGCCAACAAGAATTTGGGGCCGAGATTCTGGCACTTTCCTTAACCTCCTAAGGCTTGTGCATTCAGATTGGTGTTTGGAATATATGATTTTTCGAATGTTCTTCCTTTTATTAGTTCACTCTCAACCCAGAAATAGCGGCTGGCAGAATTTGGAGGACTCTTTTGCAACTGCGTGCAGTGATTAA

Coding sequence (CDS)

ATGTTTATTCATCTTCGGCATGCCTTGATTGCGTCAATGGGTTTCAGTTTTTTTTTCTTTTTTTATTTTAGTTTCGTTGATATTTCTGATCCAAGTCGTCTTCAGCGCTGTACGTTGCCAACAAGAATTTGGGGCCGAGATTCTGGCACTTTCCTTAACCTCCTAAGGCTTGTGCATTCAGATTGGTGTTTGGAATATATGATTTTTCGAATGTTCTTCCTTTTATTAGTTCACTCTCAACCCAGAAATAGCGGCTGGCAGAATTTGGAGGACTCTTTTGCAACTGCGTGCAGTGATTAA

Protein sequence

MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHSDWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD*
Homology
[Close]
BLAST of Csa7G239580.1 vs. TrEMBL
Match: A0A0A0K918_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G239580 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHS 60
           MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHS
Sbjct: 1   MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHS 60

Query: 61  DWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD 100
           DWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD
Sbjct: 61  DWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD 99

[Close]
BLAST of Csa7G239580.1 vs. NCBI nr
Match: gi|700189063|gb|KGN44296.1| (hypothetical protein Csa_7G239580 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 5.3e-52
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHS 60
           MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHS
Sbjct: 1   MFIHLRHALIASMGFSFFFFFYFSFVDISDPSRLQRCTLPTRIWGRDSGTFLNLLRLVHS 60

Query: 61  DWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD 100
           DWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD
Sbjct: 61  DWCLEYMIFRMFFLLLVHSQPRNSGWQNLEDSFATACSD 99

The following BLAST results are available for this feature:
BLAST of Csa7G239580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K918_CUCSA3.7e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G239580 PE=4 SV=1[more]
BLAST of Csa7G239580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189063|gb|KGN44296.1|5.3e-52100.00hypothetical protein Csa_7G239580 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G239580Csa7G239580gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G239580.1Csa7G239580.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G239580.1.cds1Csa7G239580.1.cds1CDS
Csa7G239580.1.cds2Csa7G239580.1.cds2CDS
Csa7G239580.1.cds3Csa7G239580.1.cds3CDS
Csa7G239580.1.cds4Csa7G239580.1.cds4CDS