Csa6G502010.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G502010.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 25239005 .. 25241548 (+)
Sequence length441
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGAAATCGTAAGTTTAAATCTCTCCCTCCAAATTATATTAAAAAATGTTTAATAATACATGAATTGATTTTGATATAGTTATATCGCTCTATTTTTCTAAGGAAAAATTAAAGAACTTAATGAAATTTCTTTACCCATCTAAATTGATAAAATTTTATAGTTAGAACCAAAATATTTAGAAATATAACAAAATTTTATTATAGGTAAAAAGATGACATTGGGTTATATTTGTAAATATTTTTGTTATTTTTTTTTAATTTTTTTCAATATTTTAAACCTAAATTGTAATAAGAAAAATTTATAGCCAAACCATTTAAGAAAGTTCTTACCGTAGTATTTTTTGTAAGCAAAATTATTTGAATTTAATGTGTATAAACACCGACATAAAAATAGTTGAATTTGGAATGTAAATAAATATTGTGATTAAGAGCGTTTAAGCATTAAAAGATATATTTGGCCACGCCTGTTATGTTAAATCAATTTTGTATCTATTTATTAGCCATCTCTCAATAGTCAATAGTACTCTTTTTTTTTATTATATATACAAAAAGCAATACACAATTTAAAACGACTCTTATGATAAGCTTTAGCATTAAGCAGATTTGATGGCTGCTGCCTGCTGGTGAAAACAGTATTTATATTCTAATAGTACACCACAATTTATTTATTACATATTTGTGGTTTCATTTCCTTGTTTTGATAATATAATAAATATCCAATGCTTAAAAAATAAAAAGAGAAAACAAATAAAATCACAGATATACGGTTTGACTTTTCTAGCCCTTATTTGTAAATTTCAAGTAAGCTTTGCTTTTCTCATTGGTCTTCAAAATATTCCTACCTTTTGCATAGTTATTTGTATTAATCTATTTTAAAAGCATTATTCCATTGTCCTAATTTAAACTAATTTCCATATGTTTTAAATCATTTCTGCAATTAAATTTTAACCTCTAAATGTCTCTTTTATTATTACGAATAAATACTTTTAAAAATATGAAATAGATGAGAAATAAATTAAGGTTATCCATTAGCTGTCATGATGAGTCACCGAAGTTTGGCTTCGTCACAAATCCGATCCAGTAAAACGTGGACAGCTGGAAGGATCTTTTTCGCACGTGTCAATTGGAGAAAACCCTAACCCCTAACCCGAAGCCGTCGATTAAACTTAACCCAGGTTATCCTATAACGACGCCGTCACACCCGATCCCTATCACTCCGTTTTACCACGCGCAGCCTTCTTCGTTGGCAGAGGCGGTTCCACTGCTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCCCTACCCTTCCCGCCTCCGCTGCCGGCTCACAACCGCCACACTCGCCTTCACACACACACTTAATTGGTTTTTGTGAAGCTCGTGGTTTCCTTTCTCAGCCGCAGATATTGGATTTGGATTTCGAGAGGTCCAGAATCCGCAATTCTCAACCGTTGATCTTCCAGTCAACTACCTACATACAGACACGCCTTCCACCTGGACTTCCACATCATTCATCTCAAACCTTCTTGCGCCATGGAAGCAGGTCTCTCTCTCTCTCTCTAGAGTTATAATTTCTTCCTACACAGACACGTAGTGTATTGGAACATTTGGTCCTATTTGGTTTTAATTTTTTGTTTCGTTTGCTAATGTCTTCTTATCTACTTGTCTTTTATATTCGAATTGAACTTGATTGTTCTTGGGATGCGAAATTATCTCGGCCGTCTTGTGGTTTCTGGACTCATTTCAACTTCTTTTTCTTACCAATCCAATTGTTTTTCGTTTCACTAATCCCTTCTTTACTTGATGACGACTTCAATTTCCCCCTTGATATGTGGCCATCAGGGTTTAATTCGACGATTTATGGAGTCCGCCGCTGGAATTTTATTACCTTTTTTACTTTTAAGGAAATTTTTTGTTTTGCTCGAATGATTTTACCCATATGTTTTGGGATTGCTGTAGATTGGAAGCTGTGTTCTTATAGGTAGGTGTAGGTATTATATTTTAGATTTCCGATTTGGGATGTAAATTACATATGTAGAAATATGATCGATCGCATTATTTTTCGGCGTTTGTCCTGGAACCTACGATTAGGGATTTGGAAGAATTGAGGCCTGAGACAGAATGGCATTAATTTCTATGATTAGAGAAATTTATTGATGATAAGGCGTCTACAGGGGTGAGTGAAACTATTGGAATGCTCACTAATTCCAGGAAGTAGATCCTTATTTAGAAATCTGGTGTCTAATATTATGATTCGATTTGCTGCAATCTAAATAGATGTTGTCTATTTTCACTCTCGCGTTGTAGAATGATCTTCATCCTATTGCATCTTATTGACTTTGTTGATTGGTTGTGTTCCAGTCCAACTACGAATTTGTTATTGCATGACGTACTTACGGAATGAAATTATTCTGTTGTTTCCTAAATTAACAACTCGGAGTGCGTCTCTCATTCATTGTAGTTTGTAACTGATTATCAGGTTGGTCATAGAAATCATCAGGACACGGGACTGCTACTTGATAATTGTTGAATTATAG

mRNA sequence

ATGAACAGAAATCGTTATCCTATAACGACGCCGTCACACCCGATCCCTATCACTCCGTTTTACCACGCGCAGCCTTCTTCGTTGGCAGAGGCGGTTCCACTGCTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCCCTACCCTTCCCGCCTCCGCTGCCGGCTCACAACCGCCACACTCGCCTTCACACACACACTTAATTGGTTTTTGTGAAGCTCGTGGTTTCCTTTCTCAGCCGCAGATATTGGATTTGGATTTCGAGAGGTCCAGAATCCGCAATTCTCAACCGTTGATCTTCCAGTCAACTACCTACATACAGACACGCCTTCCACCTGGACTTCCACATCATTCATCTCAAACCTTCTTGCGCCATGGAAGCAGGTTGGTCATAGAAATCATCAGGACACGGGACTGCTACTTGATAATTGTTGAATTATAG

Coding sequence (CDS)

ATGAACAGAAATCGTTATCCTATAACGACGCCGTCACACCCGATCCCTATCACTCCGTTTTACCACGCGCAGCCTTCTTCGTTGGCAGAGGCGGTTCCACTGCTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCCCTACCCTTCCCGCCTCCGCTGCCGGCTCACAACCGCCACACTCGCCTTCACACACACACTTAATTGGTTTTTGTGAAGCTCGTGGTTTCCTTTCTCAGCCGCAGATATTGGATTTGGATTTCGAGAGGTCCAGAATCCGCAATTCTCAACCGTTGATCTTCCAGTCAACTACCTACATACAGACACGCCTTCCACCTGGACTTCCACATCATTCATCTCAAACCTTCTTGCGCCATGGAAGCAGGTTGGTCATAGAAATCATCAGGACACGGGACTGCTACTTGATAATTGTTGAATTATAG

Protein sequence

MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPHSPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQTFLRHGSRLVIEIIRTRDCYLIIVEL*
Homology
[Close]
BLAST of Csa6G502010.1 vs. TrEMBL
Match: A0A0A0KKB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502010 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 8.9e-79
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPH 60
           MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPH
Sbjct: 1   MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPH 60

Query: 61  SPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQ 120
           SPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQ
Sbjct: 61  SPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQ 120

Query: 121 TFLRHGSRLVIEIIRTRDCYLIIVEL 147
           TFLRHGSRLVIEIIRTRDCYLIIVEL
Sbjct: 121 TFLRHGSRLVIEIIRTRDCYLIIVEL 146

[Close]
BLAST of Csa6G502010.1 vs. NCBI nr
Match: gi|700193608|gb|KGN48812.1| (hypothetical protein Csa_6G502010 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 1.3e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPH 60
           MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPH
Sbjct: 1   MNRNRYPITTPSHPIPITPFYHAQPSSLAEAVPLLAPPSSSAVLCIPTLPASAAGSQPPH 60

Query: 61  SPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQ 120
           SPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQ
Sbjct: 61  SPSHTHLIGFCEARGFLSQPQILDLDFERSRIRNSQPLIFQSTTYIQTRLPPGLPHHSSQ 120

Query: 121 TFLRHGSRLVIEIIRTRDCYLIIVEL 147
           TFLRHGSRLVIEIIRTRDCYLIIVEL
Sbjct: 121 TFLRHGSRLVIEIIRTRDCYLIIVEL 146

The following BLAST results are available for this feature:
BLAST of Csa6G502010.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKB0_CUCSA8.9e-79100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G502010 PE=4 SV=1[more]
BLAST of Csa6G502010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193608|gb|KGN48812.1|1.3e-78100.00hypothetical protein Csa_6G502010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G502010Csa6G502010gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G502010.1Csa6G502010.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G502010.1.cds1Csa6G502010.1.cds1CDS
Csa6G502010.1.cds2Csa6G502010.1.cds2CDS
Csa6G502010.1.cds3Csa6G502010.1.cds3CDS