Csa6G489900.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G489900.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mitochondrial pyruvate carrier 1; contains IPR005336 (Uncharacterised protein family UPF0041)
Location	Chr6 : 23109557 .. 23112013 (-)
Sequence length	324

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGTTAATTTTACAATTGAGTATCTAAACGGTGTTTCAACCTAACTAACCCAACCCAAGCAAAAAAAATTGGTACAAAAGGAAGAGAGAGAAAAAGAAAAAGAAAAATAGCCTGCTATCGTTCTTCATCTTCTGCTTTTGGGTGGTTTCAAAGTCAAAATTCTCTAGCGGTTCTCCATTATCTCTTGGCCAGATCTCCATCGAATTGCTGACTGTCCTCCGACGTTCGTCTTCTCCAGGTATGGTGGACTATGGAGATATAATCTGTTCTTTGTAATGTGAAATTATGGATTCAGTTTTGTACTCTGAAACTGGGTAAGGAAAGGATTTTCACCTGATTGTAAAATGCCATCTTCTTGAATGATTCATTTTTTATTTGGTTTTGGAAGTGTTTTTTAGGTCTTTCACTTCCCTCCTTTTAGGTATTTCCAGGTACTTAAGGGGAAACTGGATTCTGGGTCTATCTTAGTTCTCCTTTTGATTCTGTGGAAGGTGTGGGAAATTTTGGTGAATTTTGTTTTTGCTGTAAAATTAAACTTCAACGAAGATCAAGAATAGCTCCGTCGTAATCAAACCCCCCAACCTGGTGCGCTTCTGTTTGTAGAAATGCCACAGTCGAATAACAGTTATATAGATACTGAAAAAAGAAAATAGTGGATATACATAAACTTCCCCGAGTAAGATATTCTCAATTTCTCACAAATCTAATTATCTTCCTTCGATATTTCTGTCCAAAATTAGGCCACAAACGGACAGATTCACCAAAAGCAAACATCAATACGTATAAAAATACAATTAGATTATATATAATTTTGTGGATAGATGAAAAAGACATACTTGAAAGACTTTTAGTATAAAAATAGAGTAACCTGGAGAAAGAAATAAGTGGAAGAATTTTCTGAATATATTCATGTAAGAAAAAATATGGAGGAATTTATATGATTTTTATTGCTTGTAAGAATAAAAATCTTCAAATTCATATGTTACTTGATTGAGTTTCCTTTCACTTGCCACGTTTCTAAAGCTTTCAAACAAGTGTATCTCATGCAATATTTTGTTGCTCTGCATTATTAAAAAAGAGTTATAGCCAACAGTTTTCATGTATTGATAGGCTTTTGACCGAAATGGTTGATAATGGGAGTTCAAATGATGTATCATTTACATATTCGGTTAAAGATTTTAGAGGCAGAAATGTGTTGGATGGTGAATTATTCCTTGGTTGGTCATAATCGTAAATGTGTTTCTCTATCCATTGTTTTTGTCTCACCATAACATGATGTTTCATGAATTTTGAATTCTATGGTCTATTAATCTGTTCTTATTTATTTTTGTAGAAATCAGAGAATGGCTTCATTCCGAGCATTCTTGAACAGCCCTGTTGGTCCAAAAACTACTCATTTTTGGGGACCTGTTGCCAACTGGGGATTCGTGGCTGCTGTATGTTTGACTTCAATTTAAGTATCTGTCTTACCATGCTTTCTATGTTGCTTATCATTTAATTGTTTTTCTTAGTTCTCAATTGTCTTGATCATGTTGGTGGACTCAAACAGGGGTTAGCAGACATGAACAAGCCACCAGAAATGATTTCTGGCAACATGACAGCAGGTTGAGTGTATCTATGTTGAAACTCATTTATCTAGCTTGTCTTTTAGTTTGGTCTAAGTGGGAACATCTGCCCTTGTCACTGCAGCAATGTGCGTCTATTCAGCACTGTTCATGAGATTTGCGTGGATGGTACAACCCCGCAATTACCTACTTCTTGCTTGTCATGCCTCAAATGAGACTGTACAGTTGTATCAATTCTCACGTTGGGCAAAGGCTCAAGGGTAAATAACGAACTAATCAACTTCATTCAATTTTATTCTTGATAACCCCACTGACGTCTCCCTAGCTGGGAAGGTCTTTGGCCAAAATAAGTTATCATATGGCATTGGTTGTTGGCAAAACAGTATCTGGCTGTTGTTTTGTATCATGTTTTTGGACGAGAATTTATCAAAACATTTGTTTTTTGTCACACTGAAGATTCGTTTTTTTAACACTATCAAGACTATTTAGTATTTTTTTTAACCAAGACTTCAGTATTAGCATGTGCATTAACATGTTACGTCCCAGCTTAACTGTGTGAGTATGTCCACGTTAATTGTGGCTGTGCAGTTGTTTCGTTTCTTTTGGCAAAGCAATAAGCCTTTTTTTTTTGACATAAGTTACATTCCAATAGGTACTTGTCAGAGAAGAAAGACGAAGCTGGATCTCAGTAGCTTGATGCTGTATTCCCACATCCTGTTGTCTTTATGACATTATTTTCTACGGGTTGTAATTTGACTCATTGATAATTGTTGTGTATGTTATTTGAAAATATGTCAGAGGAAACTACTTCAGTAACACCAGAATGGAATTGGGAATTTTTCTCCCAAGAAGCAATAAAAATATTTCATATTTGCCAATTCTGAGGAAA

mRNA sequence

ATGGCTTCATTCCGAGCATTCTTGAACAGCCCTGTTGGTCCAAAAACTACTCATTTTTGGGGACCTGTTGCCAACTGGGGATTCGTGGCTGCTGGGTTAGCAGACATGAACAAGCCACCAGAAATGATTTCTGGCAACATGACAGCAGCAATGTGCGTCTATTCAGCACTGTTCATGAGATTTGCGTGGATGGTACAACCCCGCAATTACCTACTTCTTGCTTGTCATGCCTCAAATGAGACTGTACAGTTGTATCAATTCTCACGTTGGGCAAAGGCTCAAGGGTACTTGTCAGAGAAGAAAGACGAAGCTGGATCTCAGTAG

Coding sequence (CDS)

ATGGCTTCATTCCGAGCATTCTTGAACAGCCCTGTTGGTCCAAAAACTACTCATTTTTGGGGACCTGTTGCCAACTGGGGATTCGTGGCTGCTGGGTTAGCAGACATGAACAAGCCACCAGAAATGATTTCTGGCAACATGACAGCAGCAATGTGCGTCTATTCAGCACTGTTCATGAGATTTGCGTGGATGGTACAACCCCGCAATTACCTACTTCTTGCTTGTCATGCCTCAAATGAGACTGTACAGTTGTATCAATTCTCACGTTGGGCAAAGGCTCAAGGGTACTTGTCAGAGAAGAAAGACGAAGCTGGATCTCAGTAG

Protein sequence

MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ*

Homology

[Close]

BLAST of Csa6G489900.1 vs. Swiss-Prot
Match: MPC1_ARATH (Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana GN=MPC1 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.2e-50
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 4   FRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAW 63
           F+AFLNSP+GPKTTHFWGP+ANWGFVAAGL DM KPPEMISGNM++AMCVYSALFMRFAW
Sbjct: 6   FQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRFAW 65

Query: 64  MVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDE 104
           MVQPRNYLLLACHASNETVQLYQ SRWA+AQGYLS KK+E
Sbjct: 66  MVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEE 105

[Close]

BLAST of Csa6G489900.1 vs. Swiss-Prot
Match: MPC1_HUMAN (Mitochondrial pyruvate carrier 1 OS=Homo sapiens GN=MPC1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.6e-23
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 16  TTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAWMVQPRNYLLLAC 75
           +THFWGPVANWG   A + DM K PE+ISG MT A+C YS  FMRFA+ VQPRN+LL AC
Sbjct: 24  STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76  HASNETVQLYQFSRWAK 93
           HA+NE  QL Q  R  K
Sbjct: 84  HATNEVAQLIQGGRLIK 100

[Close]

BLAST of Csa6G489900.1 vs. Swiss-Prot
Match: MPC1_BOVIN (Mitochondrial pyruvate carrier 1 OS=Bos taurus GN=MPC1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 48/74 (64.86%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 16 TTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAWMVQPRNYLLLAC 75
          +THFWGPVANWG   A + DM K PE+ISG MT A+C YS  FMRFA+ VQPRN+LL AC
Sbjct: 24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76 HASNETVQLYQFSR 90
          HA+NE  QL Q  R
Sbjct: 84 HATNEVAQLIQGGR 97

[Close]

BLAST of Csa6G489900.1 vs. Swiss-Prot
Match: MPC1_MOUSE (Mitochondrial pyruvate carrier 1 OS=Mus musculus GN=Mpc1 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-22
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 16 TTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAWMVQPRNYLLLAC 75
          +THFWGPVANWG   A + DM K PE+ISG MT A+C YS  FMRFA+ VQPRN+LL AC
Sbjct: 24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76 HASNETVQLYQFSR 90
          H +NE  QL Q  R
Sbjct: 84 HVTNEVAQLIQGGR 97

[Close]

BLAST of Csa6G489900.1 vs. Swiss-Prot
Match: MPC1_RAT (Mitochondrial pyruvate carrier 1 OS=Rattus norvegicus GN=Mpc1 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-22
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 16 TTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAWMVQPRNYLLLAC 75
          +THFWGPVANWG   A + DM K PE+ISG MT A+C YS  FMRFA+ VQPRN+LL AC
Sbjct: 24 STHFWGPVANWGLPIAAINDMKKSPEIISGRMTFALCCYSLTFMRFAYKVQPRNWLLFAC 83

Query: 76 HASNETVQLYQFSR 90
          H +NE  QL Q  R
Sbjct: 84 HVTNEVAQLIQGGR 97

[Close]

BLAST of Csa6G489900.1 vs. TrEMBL
Match: A0A0A0KI44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489900 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 107

[Close]

BLAST of Csa6G489900.1 vs. TrEMBL
Match: A5AH05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01780 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-53
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFRAFLNSPVGPKTTHFWGP+ANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRAFLNSPVGPKTTHFWGPIANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGS 107
           FAWMVQPRNYLLLACHASNETVQLYQ SRWAK QGYL EKKDEA S
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQLSRWAKGQGYLQEKKDEAAS 106

[Close]

BLAST of Csa6G489900.1 vs. TrEMBL
Match: A0A022RSV3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016783mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52
Identity = 99/107 (92.52%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFR FLNSPVGPKTTHFWGPVANWGFV AGL DM KPPE+ISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRTFLNSPVGPKTTHFWGPVANWGFVIAGLVDMQKPPELISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLLLACHASNETVQLYQFSRWAK QGYL+EKKDEA SQ
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKGQGYLTEKKDEASSQ 107

[Close]

BLAST of Csa6G489900.1 vs. TrEMBL
Match: A0A0D2PMF2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G060500 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-52
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 2   ASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRF 61
           +SFRAFLNSPVGPKTTHFWGPVANWGFV AGL DMNKPPEMISGNMT+AMCVYSALFMRF
Sbjct: 3   SSFRAFLNSPVGPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTSAMCVYSALFMRF 62

Query: 62  AWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           AWMVQPRNYLLLACHASNETVQLYQ SRWA+AQGYLSEKK+EA SQ
Sbjct: 63  AWMVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSEKKEEASSQ 108

[Close]

BLAST of Csa6G489900.1 vs. TrEMBL
Match: I1LF33_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G280800 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.8e-52
Identity = 98/107 (91.59%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFRAF NSPVGPKTTHFWGP+ANWGFVAAGLAD+NKPPEMISGNMT AMCVYSALFMR
Sbjct: 1   MASFRAFWNSPVGPKTTHFWGPIANWGFVAAGLADLNKPPEMISGNMTGAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLL ACHASNETVQLY FSRWAKAQG LSEKK+EA SQ
Sbjct: 61  FAWMVQPRNYLLFACHASNETVQLYHFSRWAKAQGLLSEKKEEASSQ 107

[Close]

BLAST of Csa6G489900.1 vs. TAIR10
Match: AT5G20090.1 (AT5G20090.1 Uncharacterised protein family (UPF0041))

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-51
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 4   FRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRFAW 63
           F+AFLNSP+GPKTTHFWGP+ANWGFVAAGL DM KPPEMISGNM++AMCVYSALFMRFAW
Sbjct: 6   FQAFLNSPIGPKTTHFWGPIANWGFVAAGLVDMQKPPEMISGNMSSAMCVYSALFMRFAW 65

Query: 64  MVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDE 104
           MVQPRNYLLLACHASNETVQLYQ SRWA+AQGYLS KK+E
Sbjct: 66  MVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSKKEE 105

[Close]

BLAST of Csa6G489900.1 vs. TAIR10
Match: AT4G14695.1 (AT4G14695.1 Uncharacterised protein family (UPF0041))

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-12
Identity = 34/98 (34.69%), Postives = 49/98 (50.00%), Query Frame = 1


Query: 2   ASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMRF 61
           +  +A  N P GPKT HFW P   WG   A +AD  KPPE IS     A+     ++ R 
Sbjct: 4   SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPENISYLQQIAVTCTGMIWCRC 63

Query: 62  AWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSE 100
           + ++ P+N+ L + + +     +YQ +R  K   Y+SE
Sbjct: 64  STIITPKNWNLFSVNVAMAATGIYQLTRKIK-YDYVSE 100

[Close]

BLAST of Csa6G489900.1 vs. TAIR10
Match: AT4G05590.2 (AT4G05590.2 Uncharacterised protein family UPF0041 (InterPro:IPR005336))

HSP 1 Score: 53.5 bits (127), Expect = 9.2e-08
Identity = 21/43 (48.84%), Postives = 23/43 (53.49%), Query Frame = 1


Query: 2  ASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMIS 45
          +  +A  N P GPKT HFW P   WG   A +AD  KPPE +S
Sbjct: 4  SKLQALWNHPAGPKTIHFWAPTFKWGISIANIADFQKPPETLS 46

[Close]

BLAST of Csa6G489900.1 vs. NCBI nr
Match: gi|449448376|ref|XP_004141942.1| (PREDICTED: mitochondrial pyruvate carrier 1 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 107

[Close]

BLAST of Csa6G489900.1 vs. NCBI nr
Match: gi|659079322|ref|XP_008440195.1| (PREDICTED: mitochondrial pyruvate carrier 1-like [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 7.3e-55
Identity = 104/107 (97.20%), Postives = 104/107 (97.20%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           M SFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYS LFMR
Sbjct: 1   MVSFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSGLFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEA SQ
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAASQ 107

[Close]

BLAST of Csa6G489900.1 vs. NCBI nr
Match: gi|225456262|ref|XP_002283422.1| (PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera])

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFRAFLNSPVGPKTTHFWGP+ANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRAFLNSPVGPKTTHFWGPIANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGS 107
           FAWMVQPRNYLLLACHASNETVQLYQ SRWAK QGYL EKKDEA S
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQLSRWAKGQGYLQEKKDEAAS 106

[Close]

BLAST of Csa6G489900.1 vs. NCBI nr
Match: gi|848859372|ref|XP_012830587.1| (PREDICTED: mitochondrial pyruvate carrier 1-like [Erythranthe guttata])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 99/107 (92.52%), Postives = 101/107 (94.39%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFR FLNSPVGPKTTHFWGPVANWGFV AGL DM KPPE+ISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRTFLNSPVGPKTTHFWGPVANWGFVIAGLVDMQKPPELISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLLLACHASNETVQLYQFSRWAK QGYL+EKKDEA SQ
Sbjct: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKGQGYLTEKKDEASSQ 107

[Close]

BLAST of Csa6G489900.1 vs. NCBI nr
Match: gi|658000767|ref|XP_008392840.1| (PREDICTED: mitochondrial pyruvate carrier 1-like [Malus domestica])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-52
Identity = 99/107 (92.52%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60
           MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR
Sbjct: 1   MASFRAFLNSPVGPKTTHFWGPVANWGFVAAGLADMNKPPEMISGNMTAAMCVYSALFMR 60

Query: 61  FAWMVQPRNYLLLACHASNETVQLYQFSRWAKAQGYLSEKKDEAGSQ 108
           FAWMVQPRNYLLLACH SNETVQLYQ SRWA+ QGYL+ KKDEA S+
Sbjct: 61  FAWMVQPRNYLLLACHVSNETVQLYQLSRWARGQGYLAPKKDEAASE 107

The following BLAST results are available for this feature:

BLAST of Csa6G489900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MPC1_ARATH	3.2e-50	89.00	Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana GN=MPC1 PE=3 SV=1	[more]
MPC1_HUMAN	9.6e-23	63.64	Mitochondrial pyruvate carrier 1 OS=Homo sapiens GN=MPC1 PE=1 SV=1	[more]
MPC1_BOVIN	1.6e-22	64.86	Mitochondrial pyruvate carrier 1 OS=Bos taurus GN=MPC1 PE=1 SV=1	[more]
MPC1_MOUSE	4.7e-22	63.51	Mitochondrial pyruvate carrier 1 OS=Mus musculus GN=Mpc1 PE=1 SV=1	[more]
MPC1_RAT	4.7e-22	63.51	Mitochondrial pyruvate carrier 1 OS=Rattus norvegicus GN=Mpc1 PE=3 SV=1	[more]

BLAST of Csa6G489900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI44_CUCSA	1.2e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489900 PE=4 SV=1	[more]
A5AH05_VITVI	1.2e-53	95.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01780 PE=4 SV=...	[more]
A0A022RSV3_ERYGU	1.4e-52	92.52	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016783mg PE=4 SV=1	[more]
A0A0D2PMF2_GOSRA	4.0e-52	92.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G060500 PE=4 SV=1	[more]
I1LF33_SOYBN	6.8e-52	91.59	Uncharacterized protein OS=Glycine max GN=GLYMA_10G280800 PE=4 SV=1	[more]

BLAST of Csa6G489900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20090.1	1.8e-51	89.00	Uncharacterised protein family (UPF0041)	[more]
AT4G14695.1	2.8e-12	34.69	Uncharacterised protein family (UPF0041)	[more]
AT4G05590.2	9.2e-08	48.84	Uncharacterised protein family UPF0041 (InterPro:IPR005336)	[more]

BLAST of Csa6G489900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448376\|ref\|XP_004141942.1\|	1.7e-56	100.00	PREDICTED: mitochondrial pyruvate carrier 1 [Cucumis sativus]	[more]
gi\|659079322\|ref\|XP_008440195.1\|	7.3e-55	97.20	PREDICTED: mitochondrial pyruvate carrier 1-like [Cucumis melo]	[more]
gi\|225456262\|ref\|XP_002283422.1\|	1.8e-53	95.28	PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]	[more]
gi\|848859372\|ref\|XP_012830587.1\|	2.0e-52	92.52	PREDICTED: mitochondrial pyruvate carrier 1-like [Erythranthe guttata]	[more]
gi\|658000767\|ref\|XP_008392840.1\|	2.0e-52	92.52	PREDICTED: mitochondrial pyruvate carrier 1-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005336	MPC

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006850	mitochondrial pyruvate transport

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transport
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006301	postreplication repair
biological_process	GO:0046686	response to cadmium ion
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005774	vacuolar membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G489900	Csa6G489900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G489900.1	Csa6G489900.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G489900.1.utr3p1	Csa6G489900.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G489900.1.cds5	Csa6G489900.1.cds5	CDS
Csa6G489900.1.cds4	Csa6G489900.1.cds4	CDS
Csa6G489900.1.cds3	Csa6G489900.1.cds3	CDS
Csa6G489900.1.cds2	Csa6G489900.1.cds2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G489900.1.utr5p2	Csa6G489900.1.utr5p2	five_prime_UTR
Csa6G489900.1.utr5p1	Csa6G489900.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005336	Mitochondrial pyruvate carrier	PFAM	PF03650	MPC	coord: 4..102 score: 5.0
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 2..103 score: 5.0
None	No IPR available	PANTHER	PTHR14154:SF16	SUBFAMILY NOT NAMED	coord: 2..103 score: 5.0