Csa6G446390.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G446390.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 20920746 .. 20921734 (+)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATTTTTGGAAACAAGCATTAAAACTCCGGGCAAAAGGTGCAATAAGCCCTAACCTCTACTGCATCTTACACTTAGATACTCAGTGGTTTTCTATAAATTTCAAGAAGATTATTTTTTTCAATAACTCCGTCTGCAGTTTATTATACGAACAAAGAATTCGAGGGAAGATTCCAGAACATTCATACTGATTTCAATGATTGGACTTCAATCTTTTCAATTTGTAACCACAGAAACTCGGTCTGTTCTGCTCTGGATCTTATTTACAATTTTATATAAAATAGATCAATAAAATTTATTAACAGGTCTCTTCCTCTTGCACTTTATTGTGACCCTTGCTTTGTGCTTTGCTGCACAAACTTGGACTTACCTTATTATAGTTCCATTCCTAATACATAGTTTTTCTAAATGCAGCATTTTTGCATCTTATTCTTCTGCGTTTCTGAACATAATTATATGAACTAGCCGCATATTAGCTACCATTTCTATGACCGTTTAGATAATTATATTAGATATGTACCTTAGGAATACAACTTACAAATCCTTCCAGCTTCATAGCTCTTTCAAGAATTGTAAATTTCGTCTATGCTGCATCAGTTCTGATTGACTCCACCATCTTGATATTGTATGCTCTTCCATTTTCTTCCTGTTCTCCATCCATTGGTAAGGATTGTTTTCATTCGAGTATTAGTACACTTTACTTCAATTGTATACTTCTATCTCTCTTTGTTGACCAAAGCCAGCAACAGAATAACATAACAAAAGTGGTATTCCCTAAAGGATTTGGTTCTTTCTTTCATAAGGATGGAAGATTATCTTCACAGAAAGTATTTGATGTTTAAAATCTCAACCCATCCTGATCTGAAAAGTTCCTTTCTTTTACAGTTTTTTAATTATTTTAGTTGACAAAGTAAATAATTATTATATTTTAATTTCCAATCCTAGGAATGTTCCTGATTCTGTCCCCAATTCCATACCCCACTGA

mRNA sequence

ATGGTGGATTTTTGGAAACAAGCATTAAAACTCCGGGCAAAAGTTTATTATACGAACAAAGAATTCGAGGGAAGATTCCAGAACATTCATACTGATTTCAATGATTGGACTTCAATCTTTTCAATTTGTAACCACAGAAACTCGATATGTACCTTAGGAATACAACTTACAAATCCTTCCAGCTTCATAGCTCTTTCAAGAATTGTAAATTTCGTCTATGCTGCATCAGTTCTGATTGACTCCACCATCTTGATATTGAATGTTCCTGATTCTGTCCCCAATTCCATACCCCACTGA

Coding sequence (CDS)

ATGGTGGATTTTTGGAAACAAGCATTAAAACTCCGGGCAAAAGTTTATTATACGAACAAAGAATTCGAGGGAAGATTCCAGAACATTCATACTGATTTCAATGATTGGACTTCAATCTTTTCAATTTGTAACCACAGAAACTCGATATGTACCTTAGGAATACAACTTACAAATCCTTCCAGCTTCATAGCTCTTTCAAGAATTGTAAATTTCGTCTATGCTGCATCAGTTCTGATTGACTCCACCATCTTGATATTGAATGTTCCTGATTCTGTCCCCAATTCCATACCCCACTGA

Protein sequence

MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPSSFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH*
Homology
[Close]
BLAST of Csa6G446390.1 vs. TrEMBL
Match: A0A0A0KF47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446390 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPS 60
          MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPS
Sbjct: 1  MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPS 60

Query: 61 SFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH 99
          SFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH
Sbjct: 61 SFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH 98

[Close]
BLAST of Csa6G446390.1 vs. NCBI nr
Match: gi|700192974|gb|KGN48178.1| (hypothetical protein Csa_6G446390 [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPS 60
          MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPS
Sbjct: 1  MVDFWKQALKLRAKVYYTNKEFEGRFQNIHTDFNDWTSIFSICNHRNSICTLGIQLTNPS 60

Query: 61 SFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH 99
          SFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH
Sbjct: 61 SFIALSRIVNFVYAASVLIDSTILILNVPDSVPNSIPH 98

The following BLAST results are available for this feature:
BLAST of Csa6G446390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF47_CUCSA1.7e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446390 PE=4 SV=1[more]
BLAST of Csa6G446390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192974|gb|KGN48178.1|2.4e-49100.00hypothetical protein Csa_6G446390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G446390Csa6G446390gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G446390.1Csa6G446390.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G446390.1.cds1Csa6G446390.1.cds1CDS
Csa6G446390.1.cds2Csa6G446390.1.cds2CDS
Csa6G446390.1.cds3Csa6G446390.1.cds3CDS
Csa6G446390.1.cds4Csa6G446390.1.cds4CDS