Csa6G421590.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G421590.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 19408747 .. 19409134 (-)
Sequence length228
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCAAAATTTGGTGTATGTACTGTCTGATTAGAAATTTTATTTTGGAGTGGGTAATAATGATGGAGGGAGGGATAAAAGCATTTGAGAAAGGGAGGGAGGAAGGAATGACATTTTCCATCAGGTATGGATGGAGTGGGGTCTTGTTGTTTCTTCTTATGCTTGTTCATTGATAGCTTGATAATTTGAAAGATCAATCTGAACCCCACTAGTTAGTTATAGGTAGGGATTTTATTTTTTATTTTTTATTTTTTATTTCATTTAATAGTGTCAAGGAAATCTTGTATATTGATACGGAAGCTTGGGGTTCACTCAGGAGATGGCAATCCCATGTGAGTGAGGTTGGCAATTATGGGGGGTTTAGGGGTGGGGAAGAAGCTGAGGCATGA

mRNA sequence

ATGTACTGTCTGATTAGAAATTTTATTTTGGAGTGGGTAATAATGATGGAGGGAGGGATAAAAGCATTTGAGAAAGGGAGGGAGGAAGGAATGACATTTTCCATCAGTGTCAAGGAAATCTTGTATATTGATACGGAAGCTTGGGGTTCACTCAGGAGATGGCAATCCCATGTGAGTGAGGTTGGCAATTATGGGGGGTTTAGGGGTGGGGAAGAAGCTGAGGCATGA

Coding sequence (CDS)

ATGTACTGTCTGATTAGAAATTTTATTTTGGAGTGGGTAATAATGATGGAGGGAGGGATAAAAGCATTTGAGAAAGGGAGGGAGGAAGGAATGACATTTTCCATCAGTGTCAAGGAAATCTTGTATATTGATACGGAAGCTTGGGGTTCACTCAGGAGATGGCAATCCCATGTGAGTGAGGTTGGCAATTATGGGGGGTTTAGGGGTGGGGAAGAAGCTGAGGCATGA

Protein sequence

MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSEVGNYGGFRGGEEAEA*
Homology
[Close]
BLAST of Csa6G421590.1 vs. TrEMBL
Match: A0A0A0KE44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421590 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSE 60
          MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSE
Sbjct: 1  MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSE 60

Query: 61 VGNYGGFRGGEEAEA 76
          VGNYGGFRGGEEAEA
Sbjct: 61 VGNYGGFRGGEEAEA 75

[Close]
BLAST of Csa6G421590.1 vs. NCBI nr
Match: gi|700192761|gb|KGN47965.1| (hypothetical protein Csa_6G421590 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.3e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSE 60
          MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSE
Sbjct: 1  MYCLIRNFILEWVIMMEGGIKAFEKGREEGMTFSISVKEILYIDTEAWGSLRRWQSHVSE 60

Query: 61 VGNYGGFRGGEEAEA 76
          VGNYGGFRGGEEAEA
Sbjct: 61 VGNYGGFRGGEEAEA 75

The following BLAST results are available for this feature:
BLAST of Csa6G421590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE44_CUCSA3.7e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G421590 PE=4 SV=1[more]
BLAST of Csa6G421590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192761|gb|KGN47965.1|5.3e-36100.00hypothetical protein Csa_6G421590 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G421590Csa6G421590gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G421590.1Csa6G421590.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G421590.1.cds2Csa6G421590.1.cds2CDS
Csa6G421590.1.cds1Csa6G421590.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G421590.1.utr5p1Csa6G421590.1.utr5p1five_prime_UTR