Csa6G324830.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G324830.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 15109648 .. 15110480 (+)
Sequence length330
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGAAAATAGATGGAGTAAATTGGAATATAATTATATATAAACACACAAAAGGTACAAAGTGATGAGCATTGAGCAGTCACGAGTGGTGGTGGGACTCCACTATTCTAATTACTTAGCTTATTCTCCCAGAGAATATTTATTATTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCAACATTAACAACAACAAAAACAACACGTAAAACAAAAACCCAAACAAATTACTTCATCTCCTGCTTCCTCCACCCCTCACAAATACACCAATTTTCATTCACTTTTCTATTTCATATATTCCTTCTTTCTCAACACAATCATTTCTATTTTACAAACAATTCTTTTATTTATTTATTTATTATTATTATTACAGAAAAAAAATGTATTTAAAAAACAAACGAAAAACTCCACACAAGTAGTACTCCGATCCTCACAGCCAAAAGAGCAGAAGTAATCTTTCTCCTTCTTCTTCTTCTTCTTCAACTCAATCGTCCTCCTGTTTGCTTGCTCTTCTTGATCTTCTACACCGGCTGGCTTGGTGGGGTTTGATTAAATTTATTTATTTATTATTAATTAATTAATTAATTTAATTTGATAAAACTAAAATGCAGCTCAAGAGGGATAGACAAGGAAGGAGAAGATGAGTTGGGTGGAAATAGGGATAGATTCTACTCAAACTCCATATGGGTATTACCCAAAATAGAGTATGAAATCAAATGGATGGTAAAGGGAAAGGTTATGGTGTTGGGTCTTACAAGGTCAAGAAAAGGTCTTACAAGGTCAAGAAGACTCCATTTCAAAAGCTTAAAAAAAGAAACGGAAACAAGAAA

mRNA sequence

ATGAGCATTGAGCAGTCACGAGTGGTGGTGGGACTCCACTATTCTAATTACTTAGCTTATTCTCCCAGAGAATATTTATTATTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCAACATTAACAACAACAAAAACAACACGTAAAACAAAAACCCAAACAAATTACTTCATCTCCTGCTTCCTCCACCCCTCACAAATACACCAATTTTCATTCACTTTTCTATTTCATATATTCCTTCTTTCTCAACACAATCATTTCTATTTTACAAACAATTCTTTTATTTATTTATTTATTATTATTATTACAGAAAAAAAATGTATTTAA

Coding sequence (CDS)

ATGAGCATTGAGCAGTCACGAGTGGTGGTGGGACTCCACTATTCTAATTACTTAGCTTATTCTCCCAGAGAATATTTATTATTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCAACATTAACAACAACAAAAACAACACGTAAAACAAAAACCCAAACAAATTACTTCATCTCCTGCTTCCTCCACCCCTCACAAATACACCAATTTTCATTCACTTTTCTATTTCATATATTCCTTCTTTCTCAACACAATCATTTCTATTTTACAAACAATTCTTTTATTTATTTATTTATTATTATTATTACAGAAAAAAAATGTATTTAA

Protein sequence

MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFISCFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI*
Homology
[Close]
BLAST of Csa6G324830.1 vs. TrEMBL
Match: A0A0A0KF44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324830 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.7e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFIS 60
           MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFIS
Sbjct: 1   MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFIS 60

Query: 61  CFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI 110
           CFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI
Sbjct: 61  CFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI 109

[Close]
BLAST of Csa6G324830.1 vs. NCBI nr
Match: gi|700192235|gb|KGN47439.1| (hypothetical protein Csa_6G324830 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.7e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFIS 60
           MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFIS
Sbjct: 1   MSIEQSRVVVGLHYSNYLAYSPREYLLFLLSLSLSLSLSSTLTTTKTTRKTKTQTNYFIS 60

Query: 61  CFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI 110
           CFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI
Sbjct: 61  CFLHPSQIHQFSFTFLFHIFLLSQHNHFYFTNNSFIYLFIIIITEKKCI 109

The following BLAST results are available for this feature:
BLAST of Csa6G324830.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF44_CUCSA6.7e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324830 PE=4 SV=1[more]
BLAST of Csa6G324830.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192235|gb|KGN47439.1|9.7e-55100.00hypothetical protein Csa_6G324830 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G324830Csa6G324830gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G324830.1Csa6G324830.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G324830.1.utr5p1Csa6G324830.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G324830.1.cds1Csa6G324830.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G324830.1.utr3p1Csa6G324830.1.utr3p1three_prime_UTR