Csa6G124140.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G124140.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative uncharacterized protein Tam-RVIP1
LocationChr6 : 8571915 .. 8572262 (-)
Sequence length279
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCACAGAATCATACCTTCTATGCTCCCTATCTTCCTTGTTATCCTCGCAATGACTGGTGAAGCAGTTGCGCTCTGCAGCACGTGATTTCCTGAAAGGTTGAGCAGCGACGATGATAAGAAACAGCCTCAATGGCTGATTGGATATGATAGGGTCAGTGTGCTCATTCCTGGCATTGGACGCCTCACATTGTCACGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGGCAATTTCATTCCAAATCCTGGATATGAGGTGCGAATCACTGCCGATATCGGTGGTGTTAAAGAAACATCCTATCCTTGA

mRNA sequence

ATGGCTCACAGAATCATACCTTCTATGCTCCCTATCTTCCTTGTTATCCTCGCAATGACTGGTGAAGCAGTTGCGCTCTGCAGCACGGTCAGTGTGCTCATTCCTGGCATTGGACGCCTCACATTGTCACGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGGCAATTTCATTCCAAATCCTGGATATGAGGTGCGAATCACTGCCGATATCGGTGGTGTTAAAGAAACATCCTATCCTTGA

Coding sequence (CDS)

ATGGCTCACAGAATCATACCTTCTATGCTCCCTATCTTCCTTGTTATCCTCGCAATGACTGGTGAAGCAGTTGCGCTCTGCAGCACGGTCAGTGTGCTCATTCCTGGCATTGGACGCCTCACATTGTCACGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGGCAATTTCATTCCAAATCCTGGATATGAGGTGCGAATCACTGCCGATATCGGTGGTGTTAAAGAAACATCCTATCCTTGA

Protein sequence

MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP*
Homology
[Close]
BLAST of Csa6G124140.1 vs. TrEMBL
Match: A0A0A0KCX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQ 60
          MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQ
Sbjct: 1  MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQ 60

Query: 61 YIPGGDGNFIPNPGYEVRITADIGGVKETSYP 93
          YIPGGDGNFIPNPGYEVRITADIGGVKETSYP
Sbjct: 61 YIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

[Close]
BLAST of Csa6G124140.1 vs. NCBI nr
Match: gi|700191495|gb|KGN46699.1| (hypothetical protein Csa_6G124140 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 5.9e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQ 60
          MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQ
Sbjct: 1  MAHRIIPSMLPIFLVILAMTGEAVALCSTVSVLIPGIGRLTLSRGGHSSSYGSNPAPRRQ 60

Query: 61 YIPGGDGNFIPNPGYEVRITADIGGVKETSYP 93
          YIPGGDGNFIPNPGYEVRITADIGGVKETSYP
Sbjct: 61 YIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

The following BLAST results are available for this feature:
BLAST of Csa6G124140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCX5_CUCSA4.1e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124140 PE=4 SV=1[more]
BLAST of Csa6G124140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191495|gb|KGN46699.1|5.9e-45100.00hypothetical protein Csa_6G124140 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G124140Csa6G124140gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G124140.1Csa6G124140.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G124140.1.cds2Csa6G124140.1.cds2CDS
Csa6G124140.1.cds1Csa6G124140.1.cds1CDS