Csa6G109700.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G109700.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 7404084 .. 7404335 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAATATCAAAGTCCAACACAACTAACACCATTTCAATTCCACCTACCAGATGGAGTAAAAGTCTCCAATTTCCTTATGGTATCGATGACCCTGAAGAAACAAAGAGCAGCAAAACAATTTCTTCCTTGTGCTCTAGAAGATCATGGAGCTCAAGCTAGAGCAAAACAAGCCCAGGGGCACATTGTTGAAATTGCGCATCAGTGGTGGTCTTCATTGGAGTTGGCTGCCGAAGTTGACCGCCATTGA

mRNA sequence

ATGAATAAATATCAAAGTCCAACACAACTAACACCATTTCAATTCCACCTACCAGATGGAGTAAAAGTCTCCAATTTCCTTATGGTATCGATGACCCTGAAGAAACAAAGAGCAGCAAAACAATTTCTTCCTTGTGCTCTAGAAGATCATGGAGCTCAAGCTAGAGCAAAACAAGCCCAGGGGCACATTGTTGAAATTGCGCATCAGTGGTGGTCTTCATTGGAGTTGGCTGCCGAAGTTGACCGCCATTGA

Coding sequence (CDS)

ATGAATAAATATCAAAGTCCAACACAACTAACACCATTTCAATTCCACCTACCAGATGGAGTAAAAGTCTCCAATTTCCTTATGGTATCGATGACCCTGAAGAAACAAAGAGCAGCAAAACAATTTCTTCCTTGTGCTCTAGAAGATCATGGAGCTCAAGCTAGAGCAAAACAAGCCCAGGGGCACATTGTTGAAATTGCGCATCAGTGGTGGTCTTCATTGGAGTTGGCTGCCGAAGTTGACCGCCATTGA

Protein sequence

MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQGHIVEIAHQWWSSLELAAEVDRH*
Homology
[Close]
BLAST of Csa6G109700.1 vs. TrEMBL
Match: A0A0A0KA43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60
          MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ
Sbjct: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60

Query: 61 GHIVEIAHQWWSSLELAAEVDRH 84
          GHIVEIAHQWWSSLELAAEVDRH
Sbjct: 61 GHIVEIAHQWWSSLELAAEVDRH 83

[Close]
BLAST of Csa6G109700.1 vs. NCBI nr
Match: gi|700191371|gb|KGN46575.1| (hypothetical protein Csa_6G109700 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60
          MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ
Sbjct: 1  MNKYQSPTQLTPFQFHLPDGVKVSNFLMVSMTLKKQRAAKQFLPCALEDHGAQARAKQAQ 60

Query: 61 GHIVEIAHQWWSSLELAAEVDRH 84
          GHIVEIAHQWWSSLELAAEVDRH
Sbjct: 61 GHIVEIAHQWWSSLELAAEVDRH 83

The following BLAST results are available for this feature:
BLAST of Csa6G109700.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA43_CUCSA1.2e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G109700 PE=4 SV=1[more]
BLAST of Csa6G109700.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191371|gb|KGN46575.1|1.8e-40100.00hypothetical protein Csa_6G109700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G109700Csa6G109700gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G109700.1Csa6G109700.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G109700.1.cds1Csa6G109700.1.cds1CDS