Csa6G052110.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G052110.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3980992 .. 3981324 (-)
Sequence length333
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAAACCACATCGAAAATGGCTTAAAGAACATTAAAATCAGCTTGGCTGGGCAAGGGCAAGGAAAAACGGCACGGGCGAAAGGGGCGTGGCTCACGGCTCGAAAGAAGGGGATACGGCTCACGGCTCGAAAGAAGGGGCGCGGGGCTCTCTACTCGGGGGTGGAAGGCTCGGCTCACGGCTCATCAGTAGGGGCACGACTCACGGCTAGGCTCGACAGTAGGGGTGCGATCACGGCTCGGCGAAAGGTGCGGCTCAGTACGAAATGGGATACGGCTCACGGCTCGGGCAAAAGGGGTGTGTCTCACGGCTGGGTTGCTTTCGAGTGA

mRNA sequence

ATGAAAAAAAACCACATCGAAAATGGCTTAAAGAACATTAAAATCAGCTTGGCTGGGCAAGGGCAAGGAAAAACGGCACGGGCGAAAGGGGCGTGGCTCACGGCTCGAAAGAAGGGGATACGGCTCACGGCTCGAAAGAAGGGGCGCGGGGCTCTCTACTCGGGGGTGGAAGGCTCGGCTCACGGCTCATCAGTAGGGGCACGACTCACGGCTAGGCTCGACAGTAGGGGTGCGATCACGGCTCGGCGAAAGGTGCGGCTCAGTACGAAATGGGATACGGCTCACGGCTCGGGCAAAAGGGGTGTGTCTCACGGCTGGGTTGCTTTCGAGTGA

Coding sequence (CDS)

ATGAAAAAAAACCACATCGAAAATGGCTTAAAGAACATTAAAATCAGCTTGGCTGGGCAAGGGCAAGGAAAAACGGCACGGGCGAAAGGGGCGTGGCTCACGGCTCGAAAGAAGGGGATACGGCTCACGGCTCGAAAGAAGGGGCGCGGGGCTCTCTACTCGGGGGTGGAAGGCTCGGCTCACGGCTCATCAGTAGGGGCACGACTCACGGCTAGGCTCGACAGTAGGGGTGCGATCACGGCTCGGCGAAAGGTGCGGCTCAGTACGAAATGGGATACGGCTCACGGCTCGGGCAAAAGGGGTGTGTCTCACGGCTGGGTTGCTTTCGAGTGA

Protein sequence

MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSAHGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE*
Homology
[Close]
BLAST of Csa6G052110.1 vs. TrEMBL
Match: A0A0A0K8M6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052110 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.0e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSA 60
           MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSA
Sbjct: 1   MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSA 60

Query: 61  HGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE 111
           HGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE
Sbjct: 61  HGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE 110

[Close]
BLAST of Csa6G052110.1 vs. NCBI nr
Match: gi|700190881|gb|KGN46085.1| (hypothetical protein Csa_6G052110 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 5.7e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSA 60
           MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSA
Sbjct: 1   MKKNHIENGLKNIKISLAGQGQGKTARAKGAWLTARKKGIRLTARKKGRGALYSGVEGSA 60

Query: 61  HGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE 111
           HGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE
Sbjct: 61  HGSSVGARLTARLDSRGAITARRKVRLSTKWDTAHGSGKRGVSHGWVAFE 110

The following BLAST results are available for this feature:
BLAST of Csa6G052110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8M6_CUCSA4.0e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052110 PE=4 SV=1[more]
BLAST of Csa6G052110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190881|gb|KGN46085.1|5.7e-55100.00hypothetical protein Csa_6G052110 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G052110Csa6G052110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G052110.1Csa6G052110.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G052110.1.cds1Csa6G052110.1.cds1CDS