Csa6G024400.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G024400.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 2377348 .. 2377623 (+)
Sequence length276
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGGAGGATTTCGATTATGGGATAGAGGTCATGTCAGCAGGCTTTCTATTCTTCTTCTCGAAACTTTGCGACAAGACGTCCTTGGAGTCTTTAGCCTTAAAGGATTTTGCTTTCTTTGATTCTGAGGTTTCCTCCTTGTCTTGCGTTTTGCATTTCAGTGGGGTATTATCTTCCTCATCTTCTTCTTTAACATCATCGTCATTCACTTCTTCAACCTCTTTACAACCTTCCTTGGTTTTGAGGCGTTTTGACTATGCTCTATTCGTGTGA

mRNA sequence

ATGACCTTGGAGGATTTCGATTATGGGATAGAGGTCATGTCAGCAGGCTTTCTATTCTTCTTCTCGAAACTTTGCGACAAGACGTCCTTGGAGTCTTTAGCCTTAAAGGATTTTGCTTTCTTTGATTCTGAGGTTTCCTCCTTGTCTTGCGTTTTGCATTTCAGTGGGGTATTATCTTCCTCATCTTCTTCTTTAACATCATCGTCATTCACTTCTTCAACCTCTTTACAACCTTCCTTGGTTTTGAGGCGTTTTGACTATGCTCTATTCGTGTGA

Coding sequence (CDS)

ATGACCTTGGAGGATTTCGATTATGGGATAGAGGTCATGTCAGCAGGCTTTCTATTCTTCTTCTCGAAACTTTGCGACAAGACGTCCTTGGAGTCTTTAGCCTTAAAGGATTTTGCTTTCTTTGATTCTGAGGTTTCCTCCTTGTCTTGCGTTTTGCATTTCAGTGGGGTATTATCTTCCTCATCTTCTTCTTTAACATCATCGTCATTCACTTCTTCAACCTCTTTACAACCTTCCTTGGTTTTGAGGCGTTTTGACTATGCTCTATTCGTGTGA

Protein sequence

MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSSSSSSLTSSSFTSSTSLQPSLVLRRFDYALFV*
Homology
[Close]
BLAST of Csa6G024400.1 vs. TrEMBL
Match: A0A0A0KC33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G024400 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSS 60
          MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSS
Sbjct: 1  MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSS 60

Query: 61 SSSSLTSSSFTSSTSLQPSLVLRRFDYALFV 92
          SSSSLTSSSFTSSTSLQPSLVLRRFDYALFV
Sbjct: 61 SSSSLTSSSFTSSTSLQPSLVLRRFDYALFV 91

[Close]
BLAST of Csa6G024400.1 vs. NCBI nr
Match: gi|700190728|gb|KGN45932.1| (hypothetical protein Csa_6G024400 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.3e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSS 60
          MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSS
Sbjct: 1  MTLEDFDYGIEVMSAGFLFFFSKLCDKTSLESLALKDFAFFDSEVSSLSCVLHFSGVLSS 60

Query: 61 SSSSLTSSSFTSSTSLQPSLVLRRFDYALFV 92
          SSSSLTSSSFTSSTSLQPSLVLRRFDYALFV
Sbjct: 61 SSSSLTSSSFTSSTSLQPSLVLRRFDYALFV 91

The following BLAST results are available for this feature:
BLAST of Csa6G024400.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC33_CUCSA1.6e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G024400 PE=4 SV=1[more]
BLAST of Csa6G024400.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190728|gb|KGN45932.1|2.3e-41100.00hypothetical protein Csa_6G024400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G024400Csa6G024400gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G024400.1Csa6G024400.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G024400.1.cds1Csa6G024400.1.cds1CDS