Csa6G002340.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G002340.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 271368 .. 272487 (-)
Sequence length	660

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCAGTGAGGATCTTCAGGGTTGAACACCTCCTTCGTTTTACCAGAGCATTCCATTTACTCACTATAATTGGTGAAGAAAGAGGCAACGTGGAATTTTACAGTTCTGGTTTCGACTTAGTAGTGGTCTCCCGTCATCTCTTCGTAGTACTACATATTAAACCTCCATTTTTGCTCTATTACCAACCTCCAATATTTTCAAGGTTTTTGAGAATTCATCTTTGGGAATTTCGCGATCATCTCAGAGATACATTACTTACTTCTTCTTCAATGGACTTCAATCTTGATTGTCGTCGTTATCCACCATTAGCAGCCCTTACATTTCATGATGATACTGGTAACTATTTAATTTCTTCTTCATCATTTTCTTTTCTTCTAATAATAATTCATCTTTATATTTCTTGGATGAATGAAGTTTCTGCATGTTATTATTTCTTGGGTTCTTGTTCGGTTACCGTTTCTAGTTTTTAAAACTTAATAAACCATTTGTTTTATTTAATTTAGTTTAGAATTTGACTTGGAATCATGTACTGTTTGTTGATCTTTAACAAACATTGGCATCACCTTATAACTTGACATATTGATTTGTTGGTATTGTAATAGTTGCGCGCTCCACTCGTATACTATGGGTGTCAAATACAGAATATATAGGGAATTTGGGTGATGTTACACTTAAAAAATTTGTCTCAATTAATTCAGAACAGTTGAAACGAATTGCGATAGAGTTCATGAATATTGACAAAGGTAATATTACCACAACTCATCTCTTCTTTCCTTCTCTCATTAATTGAAGTTGGATCTCTTACATAAACTAATTAAATTGCTTGTTGCTTGTTTCACAGTTAATGTTGTGTTGACTAATTCACAAGTGACATTCTCAAGTGAATTCAAAGGGCCGATAACTTTTAATGTAGAGAACAATGAATGCTTAATTAGTGGTGTTAATGATGATGAAAGAACTGAATACTCAGTAAAGTTTCGACCCACATCATTTTTTTGCGAGTTGGCAACTTTGGTAGACAGAGTATGGTTCTATCATGAGACAGTTAAATCAGAAATTATACTCTCAGCTCCAGTCAGCATCGATGTTATACTTATGATGAGTTTCCGGAATTGA

mRNA sequence

ATGGTTCCAGTGAGGATCTTCAGGGTTGAACACCTCCTTCGTTTTACCAGAGCATTCCATTTACTCACTATAATTGGTGAAGAAAGAGGCAACGTGGAATTTTACAGTTCTGGTTTCGACTTAGTAGTGGTCTCCCGTCATCTCTTCGTAGTACTACATATTAAACCTCCATTTTTGCTCTATTACCAACCTCCAATATTTTCAAGGTTTTTGAGAATTCATCTTTGGGAATTTCGCGATCATCTCAGAGATACATTACTTACTTCTTCTTCAATGGACTTCAATCTTGATTGTCGTCGTTATCCACCATTAGCAGCCCTTACATTTCATGATGATACTGAACAGTTGAAACGAATTGCGATAGAGTTCATGAATATTGACAAAGTTAATGTTGTGTTGACTAATTCACAAGTGACATTCTCAAGTGAATTCAAAGGGCCGATAACTTTTAATGTAGAGAACAATGAATGCTTAATTAGTGGTGTTAATGATGATGAAAGAACTGAATACTCAGTAAAGTTTCGACCCACATCATTTTTTTGCGAGTTGGCAACTTTGGTAGACAGAGTATGGTTCTATCATGAGACAGTTAAATCAGAAATTATACTCTCAGCTCCAGTCAGCATCGATGTTATACTTATGATGAGTTTCCGGAATTGA

Coding sequence (CDS)

ATGGTTCCAGTGAGGATCTTCAGGGTTGAACACCTCCTTCGTTTTACCAGAGCATTCCATTTACTCACTATAATTGGTGAAGAAAGAGGCAACGTGGAATTTTACAGTTCTGGTTTCGACTTAGTAGTGGTCTCCCGTCATCTCTTCGTAGTACTACATATTAAACCTCCATTTTTGCTCTATTACCAACCTCCAATATTTTCAAGGTTTTTGAGAATTCATCTTTGGGAATTTCGCGATCATCTCAGAGATACATTACTTACTTCTTCTTCAATGGACTTCAATCTTGATTGTCGTCGTTATCCACCATTAGCAGCCCTTACATTTCATGATGATACTGAACAGTTGAAACGAATTGCGATAGAGTTCATGAATATTGACAAAGTTAATGTTGTGTTGACTAATTCACAAGTGACATTCTCAAGTGAATTCAAAGGGCCGATAACTTTTAATGTAGAGAACAATGAATGCTTAATTAGTGGTGTTAATGATGATGAAAGAACTGAATACTCAGTAAAGTTTCGACCCACATCATTTTTTTGCGAGTTGGCAACTTTGGTAGACAGAGTATGGTTCTATCATGAGACAGTTAAATCAGAAATTATACTCTCAGCTCCAGTCAGCATCGATGTTATACTTATGATGAGTTTCCGGAATTGA

Protein sequence

MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLLYYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFFCELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN*

Homology

[Close]

BLAST of Csa6G002340.1 vs. TrEMBL
Match: A0A0A0K7E3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002340 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.3e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL
Sbjct: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120
           YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA
Sbjct: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120

Query: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180
           IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF
Sbjct: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180

Query: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 220
           CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN
Sbjct: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 219

[Close]

BLAST of Csa6G002340.1 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 112 DTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYS 171
           D+   +RIA E +N   V+V  TNS+V F ++ K  ITF+ E N+C+I GV + E   + 
Sbjct: 142 DSRDFRRIASE-LNSRSVSVTFTNSRVNFFNKNK-EITFSKEENQCVIGGVEEGEEFRFI 201

Query: 172 VKFRPTSFFCELATLVDRVWF 193
           +   P  FF +L++   RVWF
Sbjct: 202 ITVHPLVFFLDLSSQSKRVWF 220

[Close]

BLAST of Csa6G002340.1 vs. NCBI nr
Match: gi|700190436|gb|KGN45640.1| (hypothetical protein Csa_6G002340 [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 1.8e-121
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL
Sbjct: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120
           YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA
Sbjct: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120

Query: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180
           IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF
Sbjct: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180

Query: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 220
           CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN
Sbjct: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 219

[Close]

BLAST of Csa6G002340.1 vs. NCBI nr
Match: gi|659116800|ref|XP_008458266.1| (PREDICTED: uncharacterized protein LOC103497734 isoform X1 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 7.8e-72
Identity = 146/252 (57.94%), Postives = 175/252 (69.44%), Query Frame = 1


Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MV VRIF+++HL+RF RAFHLLT IGEERGN+EFY SG D VV+SRHLFV+LHI+ PFL 
Sbjct: 1   MVTVRIFKLQHLIRFMRAFHLLTTIGEERGNIEFYKSGLDFVVISRHLFVLLHIRHPFLH 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDD-------- 120
           +YQPP  S +  IHL EFR HL    LTSSSMDFNLD   YPPLAALTFHDD        
Sbjct: 61  HYQPPNSSNYFTIHLKEFRQHLGHRALTSSSMDFNLD-HHYPPLAALTFHDDNSGARFTR 120

Query: 121 -------------------------TEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGP 180
                                    +E+ K I +EFMNIDKVNVVLTNSQVTFSSEFK  
Sbjct: 121 IINVSNSEHIGKLGGLTIKKFVSMDSEKFKLIVMEFMNIDKVNVVLTNSQVTFSSEFK-E 180

Query: 181 ITFNVENNECLISGVNDDERTEYSVKFRPTSFFCELATLVDRVWFYHETVKSEIILSAPV 220
           IT N E+  C+ISGV+D ER +YSV+F+PTSFFC+LA L+++V FYHET K  I +SAP+
Sbjct: 181 ITINAEDQGCIISGVDDGERIQYSVRFQPTSFFCDLANLIEKVTFYHETTKRNIAMSAPI 240

[Close]

BLAST of Csa6G002340.1 vs. NCBI nr
Match: gi|659116802|ref|XP_008458267.1| (PREDICTED: uncharacterized protein LOC103497734 isoform X2 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 4.0e-68
Identity = 136/219 (62.10%), Postives = 163/219 (74.43%), Query Frame = 1


Query: 1   MVPVRIFRVEHLLRFTRAFHLLTIIGEERGNVEFYSSGFDLVVVSRHLFVVLHIKPPFLL 60
           MV VRIF+++HL+RF RAFHLLT IGEERGN+EFY SG D VV+SRHLFV+LHI+ PFL 
Sbjct: 1   MVTVRIFKLQHLIRFMRAFHLLTTIGEERGNIEFYKSGLDFVVISRHLFVLLHIRHPFLH 60

Query: 61  YYQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTFHDDTEQLKRIA 120
           +YQPP  S +  IHL EFR HL    LTSSSMDFNLD   YPPLAALTFHDD        
Sbjct: 61  HYQPPNSSNYFTIHLKEFRQHLGHRALTSSSMDFNLD-HHYPPLAALTFHDD-------- 120

Query: 121 IEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYSVKFRPTSFF 180
                 + VNVVLTNSQVTFSSEFK  IT N E+  C+ISGV+D ER +YSV+F+PTSFF
Sbjct: 121 ------NSVNVVLTNSQVTFSSEFK-EITINAEDQGCIISGVDDGERIQYSVRFQPTSFF 180

Query: 181 CELATLVDRVWFYHETVKSEIILSAPVSIDVILMMSFRN 220
           C+LA L+++V FYHET K  I +SAP+  + I +++F N
Sbjct: 181 CDLANLIEKVTFYHETTKRNIAMSAPIGFNSIFIINFLN 203

[Close]

BLAST of Csa6G002340.1 vs. NCBI nr
Match: gi|659116798|ref|XP_008458265.1| (PREDICTED: uncharacterized protein LOC103497733 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 9.2e-65
Identity = 138/251 (54.98%), Postives = 171/251 (68.13%), Query Frame = 1


Query: 5   RIFRVEH-LLRFTRAFHLLTIIGEERG-NVEFYSSGFDLVVVSRHLFVVLHIKPPFLL-Y 64
           RIFR+EH LLRF RA HLLT IGEER  ++EFYSSG   VVVS HL V+LHI+PP LL Y
Sbjct: 6   RIFRLEHGLLRFMRALHLLTTIGEERAAHLEFYSSGLKFVVVSHHLCVILHIRPPLLLHY 65

Query: 65  YQPPIFSRFLRIHLWEFRDHLRDTLLTSSSMDFNLDCRRYPPLAALTF-HD--------- 124
           YQPP  S++L IHL EF D LRD + TSS MDFNLD  R PPLA LTF HD         
Sbjct: 66  YQPPNSSKYLNIHLKEFCDLLRDKICTSSWMDFNLD-HRQPPLATLTFGHDDCGEDFTGS 125

Query: 125 -----------------------DTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPI 184
                                  D++Q KRI +EF+NIDKV+VVLTNSQ+TFS EF   I
Sbjct: 126 IRVSNSKDEGDFGDITSTKFVSIDSKQFKRIVMEFINIDKVDVVLTNSQLTFSCEFNKEI 185

Query: 185 TFNVENNECLISGVNDDERTEYSVKFRPTSFFCELATLVDRVWFYHETVKSEIILSAPVS 220
           T NVE+ EC+I GVN +ER EYS+KFRPT FF +L ++++RVWFYH T K+ I++SAP++
Sbjct: 186 TLNVEDKECIIGGVNSEERVEYSIKFRPTKFFSDLTSMIERVWFYHNTTKTNIVISAPIA 245

[Close]

BLAST of Csa6G002340.1 vs. NCBI nr
Match: gi|700190435|gb|KGN45639.1| (hypothetical protein Csa_6G002330 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 9.7e-06
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 112 DTEQLKRIAIEFMNIDKVNVVLTNSQVTFSSEFKGPITFNVENNECLISGVNDDERTEYS 171
           D+   +RIA E +N   V+V  TNS+V F ++ K  ITF+ E N+C+I GV + E   + 
Sbjct: 142 DSRDFRRIASE-LNSRSVSVTFTNSRVNFFNKNK-EITFSKEENQCVIGGVEEGEEFRFI 201

Query: 172 VKFRPTSFFCELATLVDRVWF 193
           +   P  FF +L++   RVWF
Sbjct: 202 ITVHPLVFFLDLSSQSKRVWF 220

The following BLAST results are available for this feature:

BLAST of Csa6G002340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7E3_CUCSA	1.3e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002340 PE=4 SV=1	[more]
A0A0A0K9W8_CUCSA	6.8e-06	39.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1	[more]

BLAST of Csa6G002340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190436\|gb\|KGN45640.1\|	1.8e-121	100.00	hypothetical protein Csa_6G002340 [Cucumis sativus]	[more]
gi\|659116800\|ref\|XP_008458266.1\|	7.8e-72	57.94	PREDICTED: uncharacterized protein LOC103497734 isoform X1 [Cucumis melo]	[more]
gi\|659116802\|ref\|XP_008458267.1\|	4.0e-68	62.10	PREDICTED: uncharacterized protein LOC103497734 isoform X2 [Cucumis melo]	[more]
gi\|659116798\|ref\|XP_008458265.1\|	9.2e-65	54.98	PREDICTED: uncharacterized protein LOC103497733 [Cucumis melo]	[more]
gi\|700190435\|gb\|KGN45639.1\|	9.7e-06	39.51	hypothetical protein Csa_6G002330 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G002340	Csa6G002340	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G002340.1	Csa6G002340.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G002340.1.cds3	Csa6G002340.1.cds3	CDS
Csa6G002340.1.cds2	Csa6G002340.1.cds2	CDS
Csa6G002340.1.cds1	Csa6G002340.1.cds1	CDS