Csa5G522900.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa5G522900.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRhamnose biosynthetic enzyme 1, putative, expressed
LocationChr5 : 18307339 .. 18308965 (-)
Sequence length282
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGGTGAGCTACTGATTTTCATTGCTTCATTGTTGTTTTGTTGTTTCCCCCCTTTTGTTTAATTTTTATTTTCAAATACTTGAAGTTGTATGTTTTTAGTTGCATTGTGGAAATTTGAGTTTAGATCTGTAAGACCAGAGTGAATGGTTTTGTTTAGCAATTGAAATCAGTCATTGTTTTGATTGATATTTGGGATTATTGTAAAAAGAATCACAATTATTTGCTCGGCGTGGAGTAATTTCCCATGGTCGATACATGTAGAGGAATACGAGCAATTCCCATTTCATGATCAATGGGAGCTTCTCGTTTTTATCTCAGATTGATAAACTACCCTTCAAACTTTAATCAATCAATAAAGCAAATGTGATCCCGTGCCGCCTCATCTTTCTTTTATTTATAGTTTTATCTTCTCAATGATTATACAATTTTCCCTATTCAGCTCGTTTAAAATCAACCACTTTTGCTGATTTTTCTATTAGGAAAATAGACGCAAAGAAGTTTCATGGGGTTCTATAACTTTGATTAATATTTTTGAATTCCTTGGCTTTTGGGTGTAGATTTTGATTTTTCTATTTATTTTTTCCAATCCTCAAACAAGTAAGACGAATTTGAGCTTCGAAAATGGTTGCTGCCCGCTTTGGACAGTGGAATTTTCTTTTAAACCATCCTGGGAGAAAGATTGCATATGGTAACCACGAAAGAGAGATTGAAAAAGAGACGAACACAATTTAAAAAGTAGGTAGATCGAATAAGAAGGGGCCGCCGACGTTTTTTGGGATTATAGTCGATGGTGGCGGTGCACGGTGGCTCGACAGTGACGATGTACAGTCTGCCAAATGGAGACATCACTTGGTTGTTATTCATATTTGTGAAGATTTAGGTATTGGTTTGTTTTGACAATGCTACATTGCATGCAGAGCAATTGCTTGACTTAATTTCTGAATGAGTGATAATTCTTGGGTGGTCTGATTTTTTCATTTCAATTGTCCTCTTTAGAAGATGGTCTAAAGGTCAGCGAAAGTTTTCCTGTAATGAAAACATGAGTTGCCAGTACAGCCTCTGACCGAGGTGTAAGTTGTTTGTTGTTTATTTGTGTGCTGGAAACACAGTATAACTATGTTGGTGTTTTTTTTATTAGTTGAGTAATTGAATATGTATGTTTCAGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGGTAGGTCAAGCTACGAACTTCACCATTTTAGCAAGTTGGTTTGGATTTTGCCTAACTTTACTTTGGAAATTATCATCCAGCAATTAGGTCTCACTTGCCAAATATTATTTCAATCAACTACCTGCAACTAGTATCACATGACTATTGGAGGTTGGTAACAAGTATGTTATTATTATTAGTATTCTCTGGA

mRNA sequence

ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGCAATTAG

Coding sequence (CDS)

ATGGCTTTCCTGTTTTTGATTTTGAGACATTGCTCCATCAACAATCTACTTGAAGAATTCGAGTACGATTCCACACATCCTATCAATTTGGGGATTGGATTCAAGGAGGATGAAATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCTATGAACGAAATTAGGGGTTCAAATTCAGGGGAAACCTTTGCCCAGAAATTGATTAAGAGACTAGCTAAGCGGAGAGGAATGGTTATGATGTTAGAATTTGATCCGATTGGTCCACTCGGCAATTAG

Protein sequence

MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN*
Homology
[Close]
BLAST of Csa5G522900.1 vs. Swiss-Prot
Match: RMLCD_ARATH (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.8e-09
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+  GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 117 FEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVE 152

[Close]
BLAST of Csa5G522900.1 vs. Swiss-Prot
Match: RHM2_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+THP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 487 FEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVE 522

[Close]
BLAST of Csa5G522900.1 vs. Swiss-Prot
Match: RHM1_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08
Identity = 26/36 (72.22%), Postives = 26/36 (72.22%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD  HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 489 FEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVE 524

[Close]
BLAST of Csa5G522900.1 vs. Swiss-Prot
Match: RHM3_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08
Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+ HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 484 FEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVE 519

[Close]
BLAST of Csa5G522900.1 vs. TrEMBL
Match: A0A0A0KR13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G522900 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-23
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60
          MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAM  +   N
Sbjct: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMTNLSFEN 60

[Close]
BLAST of Csa5G522900.1 vs. TrEMBL
Match: A0A0A0KFD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486970 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLGN
Sbjct: 102 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLGN 141

[Close]
BLAST of Csa5G522900.1 vs. TrEMBL
Match: A0A0A0KMP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156140 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-10
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

[Close]
BLAST of Csa5G522900.1 vs. TrEMBL
Match: A9PCQ6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08570g PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-08
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS+HP+  GIGFKE++ PNFIGSFYSKTKAM E
Sbjct: 119 FEYDSSHPLGSGIGFKEEDTPNFIGSFYSKTKAMVE 154

[Close]
BLAST of Csa5G522900.1 vs. TrEMBL
Match: A9PD02_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12000g PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.0e-08
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS+HP+  GIGFKE++ PNFIGSFYSKTKAM E
Sbjct: 119 FEYDSSHPLGSGIGFKEEDTPNFIGSFYSKTKAMVE 154

[Close]
BLAST of Csa5G522900.1 vs. TAIR10
Match: AT1G63000.1 (AT1G63000.1 nucleotide-rhamnose synthase/epimerase-reductase)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-10
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HP+  GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 117 FEYDSGHPLGSGIGFKEEDTPNFTGSFYSKTKAMVE 152

[Close]
BLAST of Csa5G522900.1 vs. TAIR10
Match: AT1G53500.1 (AT1G53500.1 NAD-dependent epimerase/dehydratase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-10
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+THP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 487 FEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVE 522

[Close]
BLAST of Csa5G522900.1 vs. TAIR10
Match: AT1G78570.1 (AT1G78570.1 rhamnose biosynthesis 1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-09
Identity = 26/36 (72.22%), Postives = 26/36 (72.22%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD  HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 489 FEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVE 524

[Close]
BLAST of Csa5G522900.1 vs. TAIR10
Match: AT3G14790.1 (AT3G14790.1 rhamnose biosynthesis 3)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-09
Identity = 26/36 (72.22%), Postives = 27/36 (75.00%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYD+ HP   GIGFKE++ PNF GSFYSKTKAM E
Sbjct: 484 FEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVE 519

[Close]
BLAST of Csa5G522900.1 vs. NCBI nr
Match: gi|700196167|gb|KGN51344.1| (hypothetical protein Csa_5G522900 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 1 

Query: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNEIRGSN 60
          MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAM  +   N
Sbjct: 1  MAFLFLILRHCSINNLLEEFEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMTNLSFEN 60

[Close]
BLAST of Csa5G522900.1 vs. NCBI nr
Match: gi|778718002|ref|XP_011657789.1| (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810 isoform X1 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KLIKRLAKRRGM MMLEFDPIGPLGN
Sbjct: 102 NEIRGSDSGETFAKKLIKRLAKRRGMAMMLEFDPIGPLGN 141

[Close]
BLAST of Csa5G522900.1 vs. NCBI nr
Match: gi|659079206|ref|XP_008440132.1| (PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 6.2e-10
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1 

Query: 54  NEIRGSNSGETFAQKLIKRLAKRRGMVMMLEFDPIGPLGN 94
           NEIRGS+SGETFA+KL+KRLAK+RGM +MLEFDP GPLGN
Sbjct: 102 NEIRGSDSGETFAKKLMKRLAKQRGMAVMLEFDPFGPLGN 141

[Close]
BLAST of Csa5G522900.1 vs. NCBI nr
Match: gi|449452382|ref|XP_004143938.1| (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

[Close]
BLAST of Csa5G522900.1 vs. NCBI nr
Match: gi|659073682|ref|XP_008437195.1| (PREDICTED: probable rhamnose biosynthetic enzyme 3 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 20  FEYDSTHPINLGIGFKEDEIPNFIGSFYSKTKAMNE 56
           FEYDS HPIN GIGFKEDEIPNFIGSFYSKTKAM E
Sbjct: 117 FEYDSAHPINSGIGFKEDEIPNFIGSFYSKTKAMVE 152

The following BLAST results are available for this feature:
BLAST of Csa5G522900.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RMLCD_ARATH6.8e-0975.00Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reducta... [more]
RHM2_ARATH1.2e-0875.00Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
RHM1_ARATH5.8e-0872.22Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
RHM3_ARATH5.8e-0872.22Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epime... [more]
BLAST of Csa5G522900.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KR13_CUCSA9.9e-2390.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G522900 PE=4 SV=1[more]
A0A0A0KFD5_CUCSA7.9e-1292.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486970 PE=3 SV=1[more]
A0A0A0KMP5_CUCSA5.6e-1091.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G156140 PE=4 SV=1[more]
A9PCQ6_POPTR9.0e-0877.78Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08570g PE=2 SV=1[more]
A9PD02_POPTR9.0e-0877.78Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12000g PE=2 SV=1[more]
BLAST of Csa5G522900.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G63000.13.9e-1075.00 nucleotide-rhamnose synthase/epimerase-reductase[more]
AT1G53500.16.6e-1075.00 NAD-dependent epimerase/dehydratase family protein[more]
AT1G78570.13.3e-0972.22 rhamnose biosynthesis 1[more]
AT3G14790.13.3e-0972.22 rhamnose biosynthesis 3[more]
BLAST of Csa5G522900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196167|gb|KGN51344.1|1.4e-2290.00hypothetical protein Csa_5G522900 [Cucumis sativus][more]
gi|778718002|ref|XP_011657789.1|1.1e-1192.50PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51810 ... [more]
gi|659079206|ref|XP_008440132.1|6.2e-1082.50PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 isoform X1 [Cu... [more]
gi|449452382|ref|XP_004143938.1|8.1e-1091.67PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamn... [more]
gi|659073682|ref|XP_008437195.1|8.1e-1091.67PREDICTED: probable rhamnose biosynthetic enzyme 3 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019305 dTDP-rhamnose biosynthetic process
biological_process GO:0009226 nucleotide-sugar biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0030639 polyketide biosynthetic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0019872 streptomycin biosynthetic process
biological_process GO:0010253 UDP-rhamnose biosynthetic process
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0044464 cell part
cellular_component GO:0048046 apoplast
molecular_function GO:0005524 ATP binding
molecular_function GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity
molecular_function GO:0008460 dTDP-glucose 4,6-dehydratase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives
molecular_function GO:0010489 UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity
molecular_function GO:0010490 UDP-4-keto-rhamnose-4-keto-reductase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa5G522900Csa5G522900gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa5G522900.1Csa5G522900.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa5G522900.1.utr3p1Csa5G522900.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa5G522900.1.cds3Csa5G522900.1.cds3CDS
Csa5G522900.1.cds2Csa5G522900.1.cds2CDS
Csa5G522900.1.cds1Csa5G522900.1.cds1CDS