Csa5G046520.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa5G046520.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 1518107 .. 1518454 (+)
Sequence length348
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTTTTCCGATTGGAACTTACGATTTACAAACTTGCAAGTGTGAAGGGAACAAAGCCTAAACGGAGTACGGTCTGTGAACTTGCAAATAAGAAGGCTGAAATGTTCGCCGGTTGGAACACGCAAAGGTCAGAACTGAGAACTGTGAAGGGAAACAAACGAAAAATGTTGGGAACAAAGCTTAAGAGTGTGCCCTGCAAAGTGCGAACTTATGAATGCAAGGGTCAGAACGTTTGCCAGCCGAAACGTTTGAAGGTCGAAACTGAGAACTACACAGGTTGGAAATTGAAACTGAAGAACGTGCGAAGAACAGACGAAATGTCATGCGCCATCTATAGTGGATGA

mRNA sequence

ATGAAGGTTTTCCGATTGGAACTTACGATTTACAAACTTGCAAGTGTGAAGGGAACAAAGCCTAAACGGAGTACGGTCTGTGAACTTGCAAATAAGAAGGCTGAAATGTTCGCCGGTTGGAACACGCAAAGGTCAGAACTGAGAACTGTGAAGGGAAACAAACGAAAAATGTTGGGAACAAAGCTTAAGAGTGTGCCCTGCAAAGTGCGAACTTATGAATGCAAGGGTCAGAACGTTTGCCAGCCGAAACGTTTGAAGGTCGAAACTGAGAACTACACAGGTTGGAAATTGAAACTGAAGAACGTGCGAAGAACAGACGAAATGTCATGCGCCATCTATAGTGGATGA

Coding sequence (CDS)

ATGAAGGTTTTCCGATTGGAACTTACGATTTACAAACTTGCAAGTGTGAAGGGAACAAAGCCTAAACGGAGTACGGTCTGTGAACTTGCAAATAAGAAGGCTGAAATGTTCGCCGGTTGGAACACGCAAAGGTCAGAACTGAGAACTGTGAAGGGAAACAAACGAAAAATGTTGGGAACAAAGCTTAAGAGTGTGCCCTGCAAAGTGCGAACTTATGAATGCAAGGGTCAGAACGTTTGCCAGCCGAAACGTTTGAAGGTCGAAACTGAGAACTACACAGGTTGGAAATTGAAACTGAAGAACGTGCGAAGAACAGACGAAATGTCATGCGCCATCTATAGTGGATGA

Protein sequence

MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGTKLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG*
Homology
[Close]
BLAST of Csa5G046520.1 vs. TrEMBL
Match: A0A0A0KPK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G046520 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.3e-60
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGT 60
           MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGT
Sbjct: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGT 60

Query: 61  KLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 116
           KLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG
Sbjct: 61  KLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 115

[Close]
BLAST of Csa5G046520.1 vs. NCBI nr
Match: gi|700194474|gb|KGN49651.1| (hypothetical protein Csa_5G046520 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGT 60
           MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGT
Sbjct: 1   MKVFRLELTIYKLASVKGTKPKRSTVCELANKKAEMFAGWNTQRSELRTVKGNKRKMLGT 60

Query: 61  KLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 116
           KLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG
Sbjct: 61  KLKSVPCKVRTYECKGQNVCQPKRLKVETENYTGWKLKLKNVRRTDEMSCAIYSG 115

The following BLAST results are available for this feature:
BLAST of Csa5G046520.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPK1_CUCSA7.3e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G046520 PE=4 SV=1[more]
BLAST of Csa5G046520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194474|gb|KGN49651.1|1.1e-59100.00hypothetical protein Csa_5G046520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa5G046520Csa5G046520gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa5G046520.1Csa5G046520.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa5G046520.1.cds1Csa5G046520.1.cds1CDS