Csa4G664560.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G664560.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Chlorophyll A-B binding family protein
Location	Chr4 : 23191235 .. 23192809 (+)
Sequence length	729

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGATGAGTCCGTCACCAGAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGGTTTGTAAGAAAGTTATCTACCTGTATCCAACTCTTATCTGATTTCTGACTCCTTCTTTTCATCCTGCTCTAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAATCGGGTAAGCTTATTTATTGGTGCTCAAATCTTTCTATCTTAAATTCGTAGTTATTATTGACCTGTTCATGTTCATCCAATTATTAAACCTGCTACATTTTCCCTTAAACTGGCCGGTCATTTACACCGTCGAAAACTGTTCCGAGGACGCACGAATGATTTGGTGACGTCAATGCCAAGTTAGACTACTCAGTTTTTTAGAATAATTGCATACACGTTGAATTAAGATCTGTCTAGTACATATAGGACTTCGAGCTGCATGGTAGTATCAGTTATGTTCAAAGTGAGTAGATCGTGACCCAGAAAACGATTGTTAAAGAAGATCGTAGAAACCAACGAGTCCCTGGTTAAACAACTTATTGGAATCATTTTGAACTTGCTTCAGGTATGCACATAATATCCTTAAGCTCGAAGTTCGTTAAAACGCACAAACTAAAGGCTGTTCTAGGCAACACAATTGAGACATAATCAACTGGTTTCATTGTCATGGAAACTTGGTCTGTTGGAACAGTGTAAATAGTAACCGCAGAGGCAATTATCCAGTAACTGTTTAAATTAGGCTATGATTTTGTAGCATACAGTAACAAGTACTTGAAACATGAATTTGGGCACTGGAACCACCATTCTTTACCAACTAGATGACAGTTAAACTTTCTTTTGAACAAGATACAAAATGTGACAATCAAACTCAGCGATTCATTGCTGGTAAGTGCTTGCATTAAGAGACTGGATGCCTTTCATGTAGCTGCTTTGGCCGGAAGGTACGTATTCCATCACAGCCTCCTCAATCTCCACCTCATTCTACCCAGGCCTCCACGGTCGCATTCAGATCTGTTCAGTGCTCATATTTGTATCATTCTCTTCACTCACCTTTCTCACTCTCCTGCAAATATGCTAAATCTGTGGTTAACTGCTGCCACCATTGAACTTGTTATGCCACCTGAGAGGGTTCTGATTCATCTAGAAAGTTTCCTCCCAAAGTTTTGAAAAAATCAGTATAGTATGAGCTTTTTTTGCTGTGTTATTATAGATGCCCTTCCACTGGACTTCTGTAGAGGAATGAAAGTCTAAACTTCATAAGGGCTCTTGATTTAGATGATTGTTCTGCAAACAAGCAGTCGTTTGTAAAGCGTTGA

mRNA sequence

ATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGAAAACGATTGTTAAAGAAGATCGTAGAAACCAACGAGTCCCTGGTTAAACAACTTATTGGAATCATTTTGAACTTGCTTCAGATACAAAATGTGACAATCAAACTCAGCGATTCATTGCTGGTAAGTGCTTGCATTAAGAGACTGGATGCCTTTCATGTAGCTGCTTTGGCCGGAAGGCCTCCACGGTCGCATTCAGATCTGTTCAGTGCTCATATTTGTATCATTCTCTTCACTCACCTTTCTCACTCTCCTGCAAATATGCTAAATCTGTGGTTAACTGCTGCCACCATTGAACTTGTTATGCCACCTGAGAGGAGGAATGAAAGTCTAAACTTCATAAGGGCTCTTGATTTAGATGATTGTTCTGCAAACAAGCAGTCGTTTGTAAAGCGTTGA

Coding sequence (CDS)

ATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGAAAACGATTGTTAAAGAAGATCGTAGAAACCAACGAGTCCCTGGTTAAACAACTTATTGGAATCATTTTGAACTTGCTTCAGATACAAAATGTGACAATCAAACTCAGCGATTCATTGCTGGTAAGTGCTTGCATTAAGAGACTGGATGCCTTTCATGTAGCTGCTTTGGCCGGAAGGCCTCCACGGTCGCATTCAGATCTGTTCAGTGCTCATATTTGTATCATTCTCTTCACTCACCTTTCTCACTCTCCTGCAAATATGCTAAATCTGTGGTTAACTGCTGCCACCATTGAACTTGTTATGCCACCTGAGAGGAGGAATGAAAGTCTAAACTTCATAAGGGCTCTTGATTTAGATGATTGTTCTGCAAACAAGCAGTCGTTTGTAAAGCGTTGA

Protein sequence

MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVETNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFSAHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFVKR*

Homology

[Close]

BLAST of Csa4G664560.1 vs. TrEMBL
Match: A0A0A0L3G2_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664560 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 7.0e-129
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVE 120
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVE
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVE 120

Query: 121 TNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFS 180
           TNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFS
Sbjct: 121 TNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFS 180

Query: 181 AHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFV 240
           AHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFV
Sbjct: 181 AHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFV 240

Query: 241 KR 243
           KR
Sbjct: 241 KR 242

[Close]

BLAST of Csa4G664560.1 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.8e-23
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MAL QP     S+SSSS+S FG Y  +     +    R+ +S S  S C+ASWQELAGVL
Sbjct: 1   MALRQP----CSVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVL 60

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 111
           IFSAIPFTAVKAIANSPLG SLQ ++E+ K +AV NSSKFKALAE+A+ +
Sbjct: 61  IFSAIPFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNE 106

[Close]

BLAST of Csa4G664560.1 vs. TrEMBL
Match: W9QWP9_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_024786 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-22
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1


Query: 1   MALVQPHTPAS----SISSSSASLFGTY--LQQFRPLTTTLNLRSNHSISHRSTCRASWQ 60
           MA++QPH        S SSSS+S  G+   +   +P     N  +  S    S C+ASWQ
Sbjct: 3   MAIIQPHCVRFRLPYSYSSSSSSFVGSLPIIPDLKPPKHPTNTTTYSS----SLCKASWQ 62

Query: 61  ELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRL 116
           ELAGVL+FSAIPFTAVKA+ANSPLG SLQR+LE++K  AV N+SKFKALAE+ARKD   +
Sbjct: 63  ELAGVLVFSAIPFTAVKALANSPLGESLQRRLEERKKFAVENASKFKALAEKARKDSFEI 119

[Close]

BLAST of Csa4G664560.1 vs. TrEMBL
Match: B9H5X9_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0005s28000g PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           +A+V PH    S S+SS+S F         L+ + +  SN +    S C+ASWQELAGV+
Sbjct: 7   VAVVHPHV---SFSASSSSFFAHQRVPRILLSKSRSNSSNSTSLPASICKASWQELAGVV 66

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 111
           IFSAIPFTAVKAIANSPLG SLQR+LE++K  AV  SSKFKALA++ARK+
Sbjct: 67  IFSAIPFTAVKAIANSPLGESLQRRLEERKKLAVQQSSKFKALAQKARKE 113

[Close]

BLAST of Csa4G664560.1 vs. TrEMBL
Match: A0A061EWX0_THECC (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_024723 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.2e-21
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLR--SN-HSISHRSTCRASWQELA 60
           MA + P    SSISSS  +  G   +  R L+T L+L+  SN +S   RS C+ASWQELA
Sbjct: 1   MAQIGPQLRLSSISSSFFNGGGG--EDRRSLSTFLSLKPPSNLNSAKPRSFCKASWQELA 60

Query: 61  GVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDR 112
           GVL+FSAIPFT VKAIA SPLG SLQRQL +KK  AV NSSKF+ALA++AR +R
Sbjct: 61  GVLVFSAIPFTVVKAIAYSPLGESLQRQLLEKKKEAVQNSSKFRALADKARNER 112

[Close]

BLAST of Csa4G664560.1 vs. TAIR10
Match: AT1G76570.1 (AT1G76570.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-22
Identity = 62/113 (54.87%), Postives = 75/113 (66.37%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISH-RSTCRASWQELAGV 60
           MAL Q     SS+SSS +S+         P       R+  +++  RS CRASWQELAGV
Sbjct: 1   MALFQEKL--SSLSSSYSSIHSL------PRILVSKPRNRIAVTKSRSICRASWQELAGV 60

Query: 61  LIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRK 113
           L+FSAIPFTAVKAIANS +G SL+R+LE+KK  AV NSS+FK+ A+EAR D K
Sbjct: 61  LVFSAIPFTAVKAIANSSIGVSLRRRLEEKKKEAVENSSRFKSKAQEARNDSK 105

[Close]

BLAST of Csa4G664560.1 vs. NCBI nr
Match: gi|700200391|gb|KGN55549.1| (hypothetical protein Csa_4G664560 [Cucumis sativus])

HSP 1 Score: 468.0 bits (1203), Expect = 1.0e-128
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVE 120
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVE
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLLKKIVE 120

Query: 121 TNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFS 180
           TNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFS
Sbjct: 121 TNESLVKQLIGIILNLLQIQNVTIKLSDSLLVSACIKRLDAFHVAALAGRPPRSHSDLFS 180

Query: 181 AHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFV 240
           AHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFV
Sbjct: 181 AHICIILFTHLSHSPANMLNLWLTAATIELVMPPERRNESLNFIRALDLDDCSANKQSFV 240

Query: 241 KR 243
           KR
Sbjct: 241 KR 242

[Close]

BLAST of Csa4G664560.1 vs. NCBI nr
Match: gi|778697301|ref|XP_011654292.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 2.0e-52
Identity = 111/115 (96.52%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLL 116
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD   +L
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDSFEIL 115

[Close]

BLAST of Csa4G664560.1 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 111
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 110

[Close]

BLAST of Csa4G664560.1 vs. NCBI nr
Match: gi|778697304|ref|XP_011654293.1| (PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 111
           IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKD 110

[Close]

BLAST of Csa4G664560.1 vs. NCBI nr
Match: gi|659105213|ref|XP_008453033.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 4.6e-49
Identity = 104/115 (90.43%), Postives = 108/115 (93.91%), Query Frame = 1


Query: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60
           MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 10  MALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 69

Query: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFKALAEEARKDRKRLL 116
           IFSA+PFTAVKAIANSPLG SLQRQLEKKK SAVANSSKFKALAEEARKD   +L
Sbjct: 70  IFSAVPFTAVKAIANSPLGESLQRQLEKKKKSAVANSSKFKALAEEARKDSFEIL 124

The following BLAST results are available for this feature:

BLAST of Csa4G664560.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3G2_CUCSA	7.0e-129	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G66456...	[more]
D7UDH1_VITVI	8.8e-23	60.00	Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g...	[more]
W9QWP9_9ROSA	4.4e-22	55.37	Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_024786...	[more]
B9H5X9_POPTR	4.8e-21	57.27	Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0...	[more]
A0A061EWX0_THECC	8.2e-21	59.65	Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_024723 ...	[more]

BLAST of Csa4G664560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76570.1	8.7e-22	54.87	Chlorophyll A-B binding family protein	[more]

BLAST of Csa4G664560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200391\|gb\|KGN55549.1\|	1.0e-128	100.00	hypothetical protein Csa_4G664560 [Cucumis sativus]	[more]
gi\|778697301\|ref\|XP_011654292.1\|	2.0e-52	96.52	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucu...	[more]
gi\|449455655\|ref\|XP_004145567.1\|	3.4e-52	100.00	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu...	[more]
gi\|778697304\|ref\|XP_011654293.1\|	3.4e-52	100.00	PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis sa...	[more]
gi\|659105213\|ref\|XP_008453033.1\|	4.6e-49	90.43	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G664560	Csa4G664560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa4G664560.1	Csa4G664560.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G664560.1.utr5p1	Csa4G664560.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G664560.1.cds1	Csa4G664560.1.cds1	CDS
Csa4G664560.1.cds2	Csa4G664560.1.cds2	CDS
Csa4G664560.1.cds3	Csa4G664560.1.cds3	CDS
Csa4G664560.1.cds4	Csa4G664560.1.cds4	CDS
Csa4G664560.1.cds5	Csa4G664560.1.cds5	CDS
Csa4G664560.1.cds6	Csa4G664560.1.cds6	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 53..110 score: 2.6
None	No IPR available	unknown	Coil	Coil	coord: 104..124 scor
None	No IPR available	PANTHER	PTHR21649:SF24	CHLOROPHYLL A-B BINDING FAMILY PROTEIN	coord: 53..110 score: 2.6